Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00375 * 2 1 4 4 C 1.52997 * 109.47420 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47327 * 305.00600 * 4 3 2 6 6 O 1.42906 * 109.46668 * 65.00419 * 4 3 2 7 7 C 1.42902 * 113.99884 * 269.99610 * 6 4 3 8 8 C 1.50699 * 109.47315 * 185.00183 * 4 3 2 9 9 N 1.29955 * 126.28534 * 284.97709 * 8 4 3 10 10 O 1.21304 * 110.24536 * 179.97438 * 9 8 4 11 11 C 1.33640 * 109.81361 * 0.02562 * 10 9 8 12 12 C 1.50706 * 126.55033 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46953 * 270.02715 * 12 11 10 14 14 C 1.53006 * 109.46623 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00296 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47086 * 59.99480 * 20 18 16 22 22 H 1.48494 * 109.47288 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46879 * 299.99424 * 20 18 16 24 24 N 1.31130 * 106.90009 * 0.22679 * 11 10 9 25 25 H 1.09001 * 109.47651 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46959 * 299.99927 * 1 2 3 27 27 H 1.09005 * 109.47457 * 59.99240 * 1 2 3 28 28 H 1.09003 * 109.47036 * 60.00312 * 3 2 1 29 29 H 1.09002 * 109.47485 * 300.00739 * 3 2 1 30 30 H 1.08997 * 109.46889 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47436 * 300.00252 * 7 6 4 32 32 H 1.09000 * 109.46824 * 60.00338 * 7 6 4 33 33 H 1.09000 * 109.46974 * 150.02463 * 12 11 10 34 34 H 1.09001 * 109.46547 * 30.02554 * 12 11 10 35 35 H 1.09000 * 109.47486 * 60.00062 * 13 12 11 36 36 H 1.09001 * 109.47362 * 299.99339 * 13 12 11 37 37 H 1.08993 * 109.46955 * 300.00075 * 14 13 12 38 38 H 1.09000 * 109.47050 * 59.99904 * 14 13 12 39 39 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 40 40 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 41 41 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 8 3.9658 0.5792 -1.2202 7 6 4.0472 -0.8464 -1.1649 8 6 4.1480 2.5559 0.1245 9 7 4.2206 3.4533 -0.8126 10 8 4.7708 4.4511 -0.3966 11 6 5.1122 4.2796 0.8841 12 6 5.8142 5.2787 1.7673 13 6 7.3276 5.0846 1.6543 14 6 8.0402 6.0994 2.5505 15 6 9.5536 5.9049 2.4380 16 6 10.2556 6.9040 3.3212 17 1 9.6798 7.6071 3.9048 18 6 11.6328 6.9206 3.3843 19 7 12.3339 6.0641 2.6741 20 14 12.5029 8.1585 4.4797 21 1 12.0815 7.9546 5.8890 22 1 13.9717 7.9699 4.3704 23 1 12.1469 9.5350 4.0508 24 7 4.7246 3.0738 1.2237 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 4.3801 -1.2290 -2.1298 31 1 4.7578 -1.1401 -0.3924 32 1 3.0652 -1.2576 -0.9307 33 1 5.5049 5.1295 2.8018 34 1 5.5528 6.2889 1.4521 35 1 7.6368 5.2339 0.6197 36 1 7.5889 4.0744 1.9695 37 1 7.7788 7.1094 2.2350 38 1 7.7310 5.9506 3.5851 39 1 9.8147 4.8949 2.7538 40 1 9.8631 6.0535 1.4034 41 1 13.3028 6.0754 2.7186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896654426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = -64.623750 kcal Electronic energy + Delta-G solvation = -21673.849559 eV Core-core repulsion = 18170.235480 eV Total energy + Delta-G solvation = -3503.614079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.77809 -40.07763 -38.18557 -37.46234 -36.74545 -35.16348 -33.70583 -31.70491 -30.81692 -28.09172 -27.50038 -27.01909 -25.47061 -24.89038 -23.67593 -21.95831 -21.76381 -19.26183 -18.85595 -18.36430 -18.05246 -17.57494 -17.15912 -16.56202 -16.39137 -16.31987 -16.28128 -15.59410 -15.01768 -14.62288 -14.41552 -13.91987 -13.72634 -13.70798 -13.59419 -13.46294 -13.30870 -12.78377 -12.64570 -12.46454 -12.38530 -12.32715 -12.23297 -12.16173 -12.07632 -11.41939 -11.33613 -11.21866 -10.96346 -10.84967 -10.72126 -10.50665 -8.16043 -6.26934 0.00186 0.92489 1.43229 1.46227 1.53872 1.73002 1.91336 2.44437 2.56821 2.97020 3.08053 3.17398 3.59078 3.79756 3.92051 4.05258 4.10887 4.19210 4.30216 4.35633 4.45834 4.49163 4.52906 4.61134 4.64756 4.67143 4.79905 4.81630 4.84712 4.88068 4.92210 5.18699 5.34412 5.35851 5.60036 5.83304 5.89589 5.92786 5.96136 6.29328 6.92010 7.00778 7.42536 8.95636 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036318 B = 0.002366 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.783436 B =11831.345988 C =12119.771972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.057 3.943 4 C 0.187 3.813 5 H 0.108 0.892 6 O -0.396 6.396 7 C 0.027 3.973 8 C 0.158 3.842 9 N -0.379 5.379 10 O 0.080 5.920 11 C 0.205 3.795 12 C -0.020 4.020 13 C -0.107 4.107 14 C -0.095 4.095 15 C 0.018 3.982 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.265 1.265 24 N -0.494 5.494 25 H 0.106 0.894 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.063 0.937 39 H -0.014 1.014 40 H -0.011 1.011 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.714 -9.919 -4.408 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.021 4.021 4 C 0.127 3.873 5 H 0.125 0.875 6 O -0.314 6.314 7 C -0.068 4.068 8 C -0.115 4.115 9 N -0.087 5.087 10 O 0.019 5.981 11 C -0.015 4.015 12 C -0.058 4.058 13 C -0.146 4.146 14 C -0.132 4.132 15 C -0.020 4.020 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.790 3.210 21 H -0.191 1.191 22 H -0.213 1.213 23 H -0.190 1.190 24 N -0.228 5.228 25 H 0.124 0.876 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.005 0.995 40 H 0.007 0.993 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.783 -10.555 -5.165 27.428 hybrid contribution 0.880 0.461 0.451 1.091 sum -23.903 -10.094 -4.714 26.372 Atomic orbital electron populations 1.23000 0.78691 1.04413 1.00968 1.87784 1.22080 1.26417 1.95614 1.22829 0.91217 0.86125 1.01883 1.19906 0.92032 0.85296 0.90065 0.87475 1.87920 1.88166 1.22706 1.32597 1.23102 1.02063 0.78024 1.03608 1.25545 1.01048 0.99190 0.85726 1.74655 1.15156 0.95837 1.23018 1.85320 1.53792 1.32320 1.26635 1.29481 0.94275 0.93874 0.83842 1.20567 0.92533 0.95310 0.97398 1.21528 0.92305 1.00033 1.00764 1.21415 0.94478 0.98339 0.99016 1.19066 0.92921 0.94986 0.94987 1.21749 0.92032 1.17804 1.26201 0.91538 1.26038 0.98912 0.97986 0.97417 1.70106 1.06594 1.38358 1.42727 0.85499 0.76870 0.79349 0.79323 1.19054 1.21349 1.18965 1.71884 1.16396 1.07416 1.27105 0.87566 0.92893 0.93390 0.90911 0.92319 0.88126 0.93238 0.91420 0.85224 0.84813 0.92246 0.92923 0.91332 0.91798 0.99545 0.99279 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -7.06 8.83 -144.34 -1.27 -8.34 16 3 C 0.06 1.11 5.58 71.98 0.40 1.51 16 4 C 0.19 4.41 3.05 29.85 0.09 4.51 16 5 H 0.11 2.33 7.79 -2.39 -0.02 2.31 16 6 O -0.40 -10.09 10.33 -144.34 -1.49 -11.58 16 7 C 0.03 0.49 10.71 113.37 1.21 1.71 16 8 C 0.16 4.44 7.10 138.46 0.98 5.43 16 9 N -0.38 -11.37 12.16 -60.29 -0.73 -12.10 16 10 O 0.08 2.21 11.31 74.85 0.85 3.05 16 11 C 0.20 5.24 7.77 88.38 0.69 5.93 16 12 C -0.02 -0.41 5.84 29.85 0.17 -0.24 16 13 C -0.11 -3.19 5.20 30.60 0.16 -3.03 16 14 C -0.09 -3.43 5.15 30.60 0.16 -3.27 16 15 C 0.02 0.90 4.97 29.85 0.15 1.05 16 16 C -0.54 -30.02 9.11 25.60 0.23 -29.79 16 17 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 18 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 19 N -0.94 -57.47 13.29 21.45 0.28 -57.18 16 20 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 24 N -0.49 -13.94 11.55 -303.17 -3.50 -17.44 16 25 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.07 1.12 6.40 -2.39 -0.02 1.11 16 33 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -70.83 351.58 3.12 -67.72 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 1.00 Total: 4.61 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 5.96 Total: -14.58 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -3.95 Total: -86.72 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -1.92 Total: -16.87 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.83 3.12 -67.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896654426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.091 kcal (2) G-P(sol) polarization free energy of solvation -70.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds