Wall clock time and date at job start Tue Mar 31 2020 05:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99744 * 2 1 4 4 H 1.48492 * 109.47078 * 269.99945 * 3 2 1 5 5 H 1.48499 * 109.47303 * 30.00066 * 3 2 1 6 6 H 1.48506 * 109.46763 * 149.99880 * 3 2 1 7 7 C 1.37875 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47169 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46948 * 179.97438 * 10 9 7 12 12 O 1.45202 * 109.47197 * 179.97438 * 11 10 9 13 13 C 1.34222 * 117.00025 * 179.97438 * 12 11 10 14 14 O 1.20826 * 120.00250 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99915 * 180.02562 * 13 12 11 16 16 H 1.08996 * 109.50216 * 59.94055 * 15 13 12 17 17 C 1.53048 * 109.49614 * 180.02562 * 15 13 12 18 18 C 1.53040 * 109.53641 * 181.31595 * 17 15 13 19 19 C 1.53198 * 109.31268 * 298.63405 * 18 17 15 20 20 N 1.46925 * 108.77332 * 54.63430 * 19 18 17 21 21 C 1.34777 * 120.62725 * 126.37173 * 20 19 18 22 22 N 1.34772 * 120.00143 * 5.22146 * 21 20 19 23 23 O 1.21587 * 120.00151 * 185.22272 * 21 20 19 24 24 C 1.46919 * 118.74063 * 306.64341 * 20 19 18 25 25 H 0.96992 * 120.00078 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47453 * 59.99392 * 9 7 2 27 27 H 1.09010 * 109.46446 * 299.99949 * 9 7 2 28 28 H 1.08998 * 109.47103 * 60.00012 * 10 9 7 29 29 H 1.08995 * 109.46939 * 299.99658 * 10 9 7 30 30 H 1.09003 * 109.47009 * 59.99889 * 11 10 9 31 31 H 1.08995 * 109.47443 * 299.99865 * 11 10 9 32 32 H 1.08997 * 109.46246 * 61.29784 * 17 15 13 33 33 H 1.09001 * 109.46221 * 301.33299 * 17 15 13 34 34 H 1.08998 * 109.49946 * 178.68669 * 18 17 15 35 35 H 1.09004 * 109.49964 * 58.58145 * 18 17 15 36 36 H 1.09004 * 109.58640 * 294.84958 * 19 18 17 37 37 H 1.09003 * 109.70300 * 174.49081 * 19 18 17 38 38 H 0.97000 * 120.00175 * 175.02582 * 22 21 20 39 39 H 0.97006 * 120.00284 * 354.74693 * 22 21 20 40 40 H 1.09004 * 109.58744 * 173.15042 * 24 20 19 41 41 H 1.09005 * 109.58981 * 293.56914 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 8 2.4240 -6.0907 -0.0024 13 6 1.9110 -7.3310 -0.0023 14 8 0.7132 -7.4894 -0.0025 15 6 2.8291 -8.5261 -0.0021 16 1 3.4588 -8.5011 0.8872 17 6 1.9961 -9.8101 -0.0028 18 6 2.9272 -11.0242 0.0306 19 6 3.8102 -11.0200 -1.2213 20 7 4.5055 -9.7284 -1.3053 21 6 5.8469 -9.6773 -1.4263 22 7 6.5537 -10.8148 -1.5772 23 8 6.4193 -8.6050 -1.3993 24 6 3.7114 -8.4936 -1.2487 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5564 -0.8918 27 1 0.6241 -2.5574 0.8881 28 1 2.8714 -3.6046 0.8890 29 1 2.8727 -3.6038 -0.8909 30 1 0.8542 -5.0447 -0.8923 31 1 0.8534 -5.0450 0.8877 32 1 1.3849 -9.8459 -0.9045 33 1 1.3497 -9.8240 0.8748 34 1 2.3332 -11.9377 0.0536 35 1 3.5563 -10.9760 0.9195 36 1 3.1897 -11.1592 -2.1066 37 1 4.5419 -11.8255 -1.1576 38 1 7.5097 -10.7743 -1.7365 39 1 6.1072 -11.6742 -1.5225 40 1 4.3779 -7.6324 -1.2007 41 1 3.0826 -8.4225 -2.1363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914619364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:56 Heat of formation + Delta-G solvation = -134.074187 kcal Electronic energy + Delta-G solvation = -22265.339593 eV Core-core repulsion = 18758.713917 eV Total energy + Delta-G solvation = -3506.625676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97656 -40.06109 -37.72160 -36.38733 -34.36659 -33.95922 -32.73007 -31.95728 -31.40773 -27.18484 -25.81216 -24.85397 -23.21557 -22.10023 -20.58867 -20.25869 -19.79940 -18.79369 -17.54006 -17.19440 -16.58701 -16.38005 -16.01036 -15.44212 -15.15411 -14.82889 -14.72975 -14.44564 -13.82308 -13.79664 -13.52051 -13.39093 -12.88643 -12.22401 -12.11944 -11.87932 -11.78333 -11.49048 -11.38413 -11.00735 -10.94363 -10.65423 -10.59884 -10.49983 -10.36757 -10.30677 -10.01656 -9.69166 -9.47339 -9.13561 -9.01017 -8.36167 -6.01100 -4.03866 2.16614 2.45769 2.85949 2.91982 3.33633 3.39547 3.43737 3.71994 4.25021 4.35333 4.44381 4.46442 4.55504 4.78586 4.88282 5.01228 5.16434 5.32057 5.34953 5.39966 5.43277 5.55465 5.60134 5.64341 5.76599 5.91042 5.99173 6.05056 6.38304 6.52568 6.57838 6.57983 6.86307 7.02261 7.49111 7.63066 7.73986 7.90302 7.97638 8.29718 8.38983 9.02557 9.60429 11.10423 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.002900 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.688722 B = 9653.140352 C =10631.622429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.110 4.110 11 C 0.068 3.932 12 O -0.354 6.354 13 C 0.464 3.536 14 O -0.508 6.508 15 C -0.096 4.096 16 H 0.112 0.888 17 C -0.105 4.105 18 C -0.134 4.134 19 C 0.108 3.892 20 N -0.627 5.627 21 C 0.709 3.291 22 N -0.869 5.869 23 O -0.584 6.584 24 C 0.138 3.862 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.414 0.586 39 H 0.395 0.605 40 H 0.112 0.888 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 -28.513 -2.007 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.270 6.270 13 C 0.306 3.694 14 O -0.397 6.397 15 C -0.117 4.117 16 H 0.130 0.870 17 C -0.143 4.143 18 C -0.172 4.172 19 C -0.015 4.015 20 N -0.366 5.366 21 C 0.409 3.591 22 N -0.439 5.439 23 O -0.461 6.461 24 C 0.015 3.985 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.246 0.754 39 H 0.225 0.775 40 H 0.130 0.870 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.850 -27.591 -1.982 28.754 hybrid contribution 0.321 0.481 0.045 0.580 sum 8.171 -27.110 -1.937 28.381 Atomic orbital electron populations 1.69966 1.06090 1.26736 1.50685 1.25029 0.94878 0.99366 0.95211 0.86544 0.79832 0.83204 0.78148 1.20606 1.21216 1.19774 1.21188 0.93177 0.90687 1.50842 0.92383 1.19050 0.93829 0.90775 0.97636 1.21771 0.99924 0.90937 1.02108 1.23527 0.91185 0.83653 1.02122 1.86527 1.42643 1.15095 1.82724 1.23276 0.88282 0.84999 0.72822 1.90660 1.16802 1.86885 1.45324 1.21357 0.96791 0.91265 1.02256 0.87037 1.21428 0.97138 0.91273 1.04420 1.21946 0.98300 0.98859 0.98122 1.21723 0.96066 0.84804 0.98938 1.47199 1.04559 1.07195 1.77618 1.15838 0.81314 0.84498 0.77492 1.43157 1.12716 1.07335 1.80704 1.91017 1.69004 1.28155 1.57934 1.21294 0.93887 0.87699 0.95647 0.92919 0.96246 0.96265 0.92105 0.92031 0.91469 0.91509 0.90504 0.90287 0.89807 0.91062 0.90801 0.90271 0.75378 0.77479 0.86969 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.34 5.53 -26.73 -0.15 -2.49 16 11 C 0.07 1.28 5.47 37.16 0.20 1.48 16 12 O -0.35 -6.00 10.15 -39.24 -0.40 -6.40 16 13 C 0.46 6.88 7.26 36.01 0.26 7.14 16 14 O -0.51 -8.71 15.73 -18.75 -0.29 -9.01 16 15 C -0.10 -1.02 2.77 -91.87 -0.25 -1.28 16 16 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.10 -0.86 4.46 -26.69 -0.12 -0.98 16 18 C -0.13 -0.69 6.08 -26.61 -0.16 -0.85 16 19 C 0.11 0.53 6.39 -3.71 -0.02 0.51 16 20 N -0.63 -5.50 2.98 -178.76 -0.53 -6.03 16 21 C 0.71 7.51 8.57 -86.92 -0.75 6.76 16 22 N -0.87 -5.05 8.78 27.63 0.24 -4.81 16 23 O -0.58 -9.18 16.60 5.29 0.09 -9.09 16 24 C 0.14 1.48 5.62 -3.94 -0.02 1.46 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 31 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.18 5.64 -51.93 -0.29 -0.11 16 38 H 0.41 2.03 8.93 -40.82 -0.36 1.66 16 39 H 0.39 1.04 6.32 -40.82 -0.26 0.79 16 40 H 0.11 1.49 6.99 -51.93 -0.36 1.12 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -35.67 339.75 -7.93 -43.60 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.31 Total: -2.38 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.56 Total: -1.47 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.45 Total: -37.27 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.61 Total: -24.50 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.67 -7.93 -43.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914619364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.477 kcal (2) G-P(sol) polarization free energy of solvation -35.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds