Wall clock time and date at job start Tue Mar 31 2020 05:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99744 * 2 1 4 4 H 1.48492 * 109.47078 * 269.99945 * 3 2 1 5 5 H 1.48499 * 109.47303 * 30.00066 * 3 2 1 6 6 H 1.48506 * 109.46763 * 149.99880 * 3 2 1 7 7 C 1.37875 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47169 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46948 * 179.97438 * 10 9 7 12 12 O 1.45202 * 109.47197 * 179.97438 * 11 10 9 13 13 C 1.34222 * 117.00025 * 179.97438 * 12 11 10 14 14 O 1.20826 * 120.00250 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99915 * 180.02562 * 13 12 11 16 16 H 1.08996 * 109.50216 * 59.94055 * 15 13 12 17 17 C 1.53048 * 109.49614 * 180.02562 * 15 13 12 18 18 C 1.53040 * 109.53641 * 181.31595 * 17 15 13 19 19 C 1.53198 * 109.31268 * 298.63405 * 18 17 15 20 20 N 1.46925 * 108.77332 * 54.63430 * 19 18 17 21 21 C 1.34777 * 120.62725 * 126.37173 * 20 19 18 22 22 N 1.34772 * 120.00143 * 5.22146 * 21 20 19 23 23 O 1.21587 * 120.00151 * 185.22272 * 21 20 19 24 24 C 1.46919 * 118.74063 * 306.64341 * 20 19 18 25 25 H 0.96992 * 120.00078 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47453 * 59.99392 * 9 7 2 27 27 H 1.09010 * 109.46446 * 299.99949 * 9 7 2 28 28 H 1.08998 * 109.47103 * 60.00012 * 10 9 7 29 29 H 1.08995 * 109.46939 * 299.99658 * 10 9 7 30 30 H 1.09003 * 109.47009 * 59.99889 * 11 10 9 31 31 H 1.08995 * 109.47443 * 299.99865 * 11 10 9 32 32 H 1.08997 * 109.46246 * 61.29784 * 17 15 13 33 33 H 1.09001 * 109.46221 * 301.33299 * 17 15 13 34 34 H 1.08998 * 109.49946 * 178.68669 * 18 17 15 35 35 H 1.09004 * 109.49964 * 58.58145 * 18 17 15 36 36 H 1.09004 * 109.58640 * 294.84958 * 19 18 17 37 37 H 1.09003 * 109.70300 * 174.49081 * 19 18 17 38 38 H 0.97000 * 120.00175 * 175.02582 * 22 21 20 39 39 H 0.97006 * 120.00284 * 354.74693 * 22 21 20 40 40 H 1.09004 * 109.58744 * 173.15042 * 24 20 19 41 41 H 1.09005 * 109.58981 * 293.56914 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 8 2.4240 -6.0907 -0.0024 13 6 1.9110 -7.3310 -0.0023 14 8 0.7132 -7.4894 -0.0025 15 6 2.8291 -8.5261 -0.0021 16 1 3.4588 -8.5011 0.8872 17 6 1.9961 -9.8101 -0.0028 18 6 2.9272 -11.0242 0.0306 19 6 3.8102 -11.0200 -1.2213 20 7 4.5055 -9.7284 -1.3053 21 6 5.8469 -9.6773 -1.4263 22 7 6.5537 -10.8148 -1.5772 23 8 6.4193 -8.6050 -1.3993 24 6 3.7114 -8.4936 -1.2487 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5564 -0.8918 27 1 0.6241 -2.5574 0.8881 28 1 2.8714 -3.6046 0.8890 29 1 2.8727 -3.6038 -0.8909 30 1 0.8542 -5.0447 -0.8923 31 1 0.8534 -5.0450 0.8877 32 1 1.3849 -9.8459 -0.9045 33 1 1.3497 -9.8240 0.8748 34 1 2.3332 -11.9377 0.0536 35 1 3.5563 -10.9760 0.9195 36 1 3.1897 -11.1592 -2.1066 37 1 4.5419 -11.8255 -1.1576 38 1 7.5097 -10.7743 -1.7365 39 1 6.1072 -11.6742 -1.5225 40 1 4.3779 -7.6324 -1.2007 41 1 3.0826 -8.4225 -2.1363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914619364.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:56 Heat of formation + Delta-G solvation = -158.915703 kcal Electronic energy + Delta-G solvation = -22266.416802 eV Core-core repulsion = 18758.713917 eV Total energy + Delta-G solvation = -3507.702885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97105 -41.08289 -38.63041 -37.68595 -35.96191 -35.13281 -33.73784 -33.38246 -32.36478 -29.06168 -26.51870 -26.03327 -24.79481 -22.94136 -22.19043 -21.52625 -20.56537 -19.45814 -18.81823 -18.44291 -18.00481 -17.63328 -17.34716 -16.50998 -16.37844 -15.91148 -15.84343 -15.38492 -15.11546 -14.79607 -14.46415 -14.22428 -14.12656 -13.87602 -13.76954 -13.53862 -12.84309 -12.63791 -12.53235 -12.39104 -12.11639 -12.06674 -12.01401 -11.81229 -11.72819 -11.44235 -11.42596 -11.31001 -11.19471 -10.71105 -10.58550 -9.69151 -8.23233 -6.34732 1.01575 1.40168 1.41920 1.50673 1.54327 1.83186 2.10954 2.40496 3.10489 3.21693 3.45356 3.64461 3.68094 3.97706 3.97950 4.03041 4.04622 4.12197 4.39395 4.49443 4.52922 4.68549 4.71262 4.77426 4.85184 4.86129 5.01052 5.05297 5.11432 5.34076 5.35580 5.43604 5.51035 5.62018 5.78664 5.80824 6.01851 6.18119 6.62166 6.80883 6.90768 7.34750 7.60628 8.89050 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.002900 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.688722 B = 9653.140352 C =10631.622429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.096 4.096 11 C 0.078 3.922 12 O -0.359 6.359 13 C 0.463 3.537 14 O -0.531 6.531 15 C -0.085 4.085 16 H 0.118 0.882 17 C -0.103 4.103 18 C -0.125 4.125 19 C 0.102 3.898 20 N -0.624 5.624 21 C 0.701 3.299 22 N -0.845 5.845 23 O -0.644 6.644 24 C 0.141 3.859 25 H 0.265 0.735 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.420 0.580 39 H 0.413 0.587 40 H 0.082 0.918 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.302 -30.657 -2.084 32.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.133 4.133 11 C 0.004 3.996 12 O -0.276 6.276 13 C 0.307 3.693 14 O -0.421 6.421 15 C -0.105 4.105 16 H 0.136 0.864 17 C -0.141 4.141 18 C -0.163 4.163 19 C -0.020 4.020 20 N -0.361 5.361 21 C 0.401 3.599 22 N -0.416 5.416 23 O -0.526 6.526 24 C 0.017 3.983 25 H 0.074 0.926 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.130 0.870 38 H 0.254 0.746 39 H 0.247 0.753 40 H 0.100 0.900 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.017 -29.830 -2.062 31.231 hybrid contribution -0.081 1.047 0.063 1.052 sum 8.936 -28.782 -1.999 30.204 Atomic orbital electron populations 1.70092 1.07822 1.27975 1.51416 1.25998 0.95810 1.03469 0.94527 0.85393 0.78631 0.78141 0.78574 1.19682 1.20590 1.18706 1.21626 0.93697 0.91997 1.50982 0.91908 1.18921 0.94186 0.92334 0.95536 1.21468 0.98783 0.90718 1.02374 1.23143 0.90867 0.83587 1.01975 1.86527 1.42196 1.15717 1.83130 1.24167 0.88721 0.84929 0.71520 1.90647 1.18056 1.86966 1.46388 1.21452 0.96340 0.90250 1.02465 0.86391 1.21480 0.97397 0.91152 1.04040 1.21939 0.97909 0.98225 0.98232 1.22075 0.96902 0.83519 0.99477 1.47192 1.04066 1.07879 1.76974 1.16107 0.81805 0.84663 0.77324 1.42917 1.12887 1.06815 1.79010 1.90978 1.70305 1.30663 1.60625 1.21079 0.93447 0.88041 0.95771 0.92610 0.98351 0.98358 0.91744 0.91726 0.91644 0.91709 0.90784 0.90867 0.86919 0.90878 0.89465 0.86955 0.74638 0.75293 0.89984 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.73 9.11 25.60 0.23 -31.49 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.10 -4.18 5.53 30.59 0.17 -4.01 16 11 C 0.08 2.99 5.47 71.98 0.39 3.38 16 12 O -0.36 -12.37 10.15 -51.34 -0.52 -12.89 16 13 C 0.46 13.77 7.26 71.24 0.52 14.29 16 14 O -0.53 -18.28 15.73 21.96 0.35 -17.93 16 15 C -0.08 -1.74 2.77 -11.60 -0.03 -1.77 16 16 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 17 C -0.10 -1.50 4.46 30.62 0.14 -1.36 16 18 C -0.13 -0.83 6.08 30.67 0.19 -0.65 16 19 C 0.10 0.63 6.39 86.36 0.55 1.18 16 20 N -0.62 -9.85 2.98 -837.74 -2.49 -12.35 16 21 C 0.70 14.02 8.57 179.06 1.53 15.55 16 22 N -0.84 -7.73 8.78 -184.75 -1.62 -9.35 16 23 O -0.64 -20.55 16.60 -3.99 -0.07 -20.62 16 24 C 0.14 2.98 5.62 86.22 0.48 3.47 16 25 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 28 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.06 2.75 8.14 -2.39 -0.02 2.74 16 30 H 0.07 2.52 8.13 -2.39 -0.02 2.50 16 31 H 0.06 2.50 8.13 -2.39 -0.02 2.48 16 32 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 33 H 0.07 1.17 8.07 -2.39 -0.02 1.15 16 34 H 0.11 0.21 8.14 -2.39 -0.02 0.20 16 35 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 37 H 0.11 -0.04 5.64 -2.39 -0.01 -0.06 16 38 H 0.42 3.24 8.93 -92.71 -0.83 2.41 16 39 H 0.41 0.61 6.32 -92.70 -0.59 0.02 16 40 H 0.08 2.27 6.99 -2.39 -0.02 2.25 16 41 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -79.56 339.75 2.37 -77.19 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -0.37 Total: 5.54 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 4.79 Total: 0.67 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -3.83 Total: -78.99 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -0.24 Total: -51.45 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -79.56 2.37 -77.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914619364.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.730 kcal (2) G-P(sol) polarization free energy of solvation -79.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds