Wall clock time and date at job start Tue Mar 31 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46989 * 2 1 4 4 C 1.53006 * 110.53003 * 62.17226 * 3 2 1 5 5 O 1.42903 * 109.46874 * 187.12899 * 4 3 2 6 6 C 1.42896 * 114.00375 * 180.02562 * 5 4 3 7 7 N 1.47309 * 110.93249 * 299.36746 * 3 2 1 8 8 C 1.34525 * 106.61823 * 241.69370 * 7 3 2 9 9 O 1.21543 * 123.77085 * 179.85399 * 8 7 3 10 10 N 1.33791 * 112.45685 * 359.58762 * 8 7 3 11 11 C 1.46500 * 124.17509 * 180.23558 * 10 8 7 12 12 C 1.53001 * 109.47359 * 90.02230 * 11 10 8 13 13 C 1.53004 * 109.47079 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47038 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99921 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00196 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99596 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00247 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47323 * 90.00326 * 18 16 14 20 20 H 1.48500 * 109.46785 * 210.00296 * 18 16 14 21 21 H 1.48497 * 109.47000 * 330.00164 * 18 16 14 22 22 C 1.34766 * 111.64749 * 0.26475 * 10 8 7 23 23 O 1.21226 * 127.15922 * 179.97438 * 22 10 8 24 24 H 1.09006 * 109.46745 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47386 * 299.99068 * 1 2 3 26 26 H 1.08994 * 109.47603 * 60.00248 * 1 2 3 27 27 H 1.09002 * 109.47322 * 240.00171 * 2 1 3 28 28 H 1.09003 * 109.47428 * 120.00310 * 2 1 3 29 29 H 1.08997 * 109.47466 * 307.12271 * 4 3 2 30 30 H 1.09000 * 109.47118 * 67.13196 * 4 3 2 31 31 H 1.09004 * 109.47203 * 300.00095 * 6 5 4 32 32 H 1.09006 * 109.46880 * 59.99566 * 6 5 4 33 33 H 1.09000 * 109.47560 * 179.97438 * 6 5 4 34 34 H 0.97005 * 126.68989 * 61.57846 * 7 3 2 35 35 H 1.08999 * 109.46956 * 210.02219 * 11 10 8 36 36 H 1.09004 * 109.47087 * 330.02121 * 11 10 8 37 37 H 1.09005 * 109.47024 * 299.99489 * 12 11 10 38 38 H 1.08995 * 109.47339 * 59.99811 * 12 11 10 39 39 H 1.08999 * 109.47080 * 299.99894 * 13 12 11 40 40 H 1.08995 * 109.47205 * 59.99710 * 13 12 11 41 41 H 0.96995 * 119.99732 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5881 2.1714 1.2672 5 8 1.9317 3.5550 1.1689 6 6 1.5522 4.3304 2.3076 7 7 1.5792 2.1636 -1.1991 8 6 2.6826 2.5248 -1.8785 9 8 2.6596 3.1392 -2.9270 10 7 3.8083 2.1372 -1.2682 11 6 5.1551 2.4004 -1.7812 12 6 5.6582 3.7366 -1.2314 13 6 7.0645 4.0117 -1.7677 14 6 7.5598 5.3281 -1.2267 15 1 6.9343 5.9102 -0.5660 16 6 8.8120 5.7891 -1.5743 17 7 9.5738 5.0801 -2.3784 18 14 9.4262 7.4206 -0.9031 19 1 10.1391 7.1914 0.3792 20 1 10.3551 8.0403 -1.8820 21 1 8.2727 8.3269 -0.6730 22 6 3.5504 1.4742 -0.1236 23 8 4.3582 1.0011 0.6466 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.5083 2.0722 1.3780 30 1 2.0840 1.7345 2.1340 31 1 0.4717 4.2760 2.4405 32 1 2.0477 3.9382 3.1958 33 1 1.8481 5.3684 2.1554 34 1 0.6594 2.3416 -1.4506 35 1 5.8265 1.6018 -1.4657 36 1 5.1273 2.4428 -2.8700 37 1 4.9868 4.5353 -1.5469 38 1 5.6860 3.6942 -0.1426 39 1 7.7362 3.2132 -1.4526 40 1 7.0363 4.0543 -2.8565 41 1 10.4545 5.4045 -2.6232 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927472835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:11 Heat of formation + Delta-G solvation = -127.260287 kcal Electronic energy + Delta-G solvation = -23460.653355 eV Core-core repulsion = 19954.323152 eV Total energy + Delta-G solvation = -3506.330203 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.65635 -39.81039 -39.12369 -37.52187 -37.13775 -35.62872 -34.02944 -32.79523 -30.06535 -29.10463 -27.44361 -26.02373 -25.32269 -24.38894 -22.68001 -21.72470 -21.43613 -19.13504 -18.49450 -18.01617 -17.91015 -17.25934 -16.91428 -16.69671 -16.36298 -16.25544 -16.01455 -15.74878 -15.22730 -14.92873 -14.80344 -14.43768 -14.11052 -13.68203 -13.39665 -13.35152 -13.15835 -12.93218 -12.72281 -12.56211 -12.42651 -12.34538 -12.04622 -11.90290 -11.72399 -11.59526 -11.40035 -11.16682 -10.77348 -10.68110 -10.58113 -10.44600 -8.22547 -6.33904 0.52852 1.14703 1.37979 1.40210 1.51490 1.95759 2.08002 2.39725 2.56222 2.79145 3.10305 3.56280 3.68426 3.85181 4.10378 4.20199 4.24800 4.29227 4.32732 4.33161 4.40456 4.48144 4.49292 4.57244 4.75050 4.82215 4.86111 4.98576 5.04656 5.08565 5.12525 5.40373 5.43555 5.62368 5.77890 5.79657 6.03627 6.09431 6.19607 6.33600 6.79828 7.09196 7.34653 8.89502 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.004163 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.796590 B = 6724.426524 C = 7194.176761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C 0.133 3.867 4 C 0.060 3.940 5 O -0.419 6.419 6 C 0.029 3.971 7 N -0.689 5.689 8 C 0.703 3.297 9 O -0.582 6.582 10 N -0.576 5.576 11 C 0.124 3.876 12 C -0.100 4.100 13 C 0.030 3.970 14 C -0.547 4.547 15 H 0.054 0.946 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.967 3.033 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.266 1.266 22 C 0.525 3.475 23 O -0.494 6.494 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.450 0.550 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.002 0.998 40 H -0.001 1.001 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.081 -11.011 9.654 28.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.043 3.957 4 C -0.017 4.017 5 O -0.339 6.339 6 C -0.066 4.066 7 N -0.354 5.354 8 C 0.404 3.596 9 O -0.459 6.459 10 N -0.320 5.320 11 C 0.003 3.997 12 C -0.139 4.139 13 C -0.007 4.007 14 C -0.585 4.585 15 H 0.072 0.928 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.791 3.209 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.191 1.191 22 C 0.314 3.686 23 O -0.365 6.365 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.298 0.702 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.311 -10.864 9.251 27.331 hybrid contribution 0.565 0.988 0.068 1.140 sum -22.746 -9.876 9.319 26.490 Atomic orbital electron populations 1.21843 0.91508 1.04134 1.03245 1.21769 0.99452 0.88569 1.05132 1.21770 0.89180 0.97092 0.87686 1.22959 1.02668 0.81806 0.94306 1.87939 1.83041 1.19993 1.42930 1.22904 1.00613 0.95697 0.87413 1.45289 1.07771 1.59195 1.23148 1.15977 0.81663 0.78879 0.83083 1.90980 1.86153 1.44912 1.23849 1.46524 1.08787 1.52517 1.24213 1.21723 0.79113 0.98739 1.00116 1.21645 0.97813 0.95106 0.99341 1.18898 0.90872 0.95780 0.95187 1.21588 1.01391 1.06133 1.29371 0.92777 1.25972 0.96888 1.01503 0.95247 1.70086 1.10596 1.40152 1.36129 0.85417 0.78269 0.78870 0.78321 1.19496 1.20275 1.19068 1.21331 0.92312 0.75507 0.79487 1.90759 1.55233 1.45939 1.44568 0.90081 0.90412 0.91919 0.90556 0.87890 0.86849 0.90203 0.91157 0.93196 0.90086 0.70189 0.88593 0.89062 0.93850 0.93579 0.97991 0.98220 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.49 71.98 0.68 -0.10 16 2 C -0.11 -1.28 5.29 30.59 0.16 -1.11 16 3 C 0.13 2.55 0.81 2.99 0.00 2.55 16 4 C 0.06 0.94 5.04 71.98 0.36 1.30 16 5 O -0.42 -9.77 10.16 -148.98 -1.51 -11.28 16 6 C 0.03 0.48 11.01 113.37 1.25 1.73 16 7 N -0.69 -14.51 5.20 -439.81 -2.29 -16.79 16 8 C 0.70 22.95 8.62 179.44 1.55 24.50 16 9 O -0.58 -23.60 17.48 -3.85 -0.07 -23.67 16 10 N -0.58 -19.81 2.60 -773.12 -2.01 -21.83 16 11 C 0.12 4.91 5.70 86.38 0.49 5.40 16 12 C -0.10 -4.75 5.48 30.60 0.17 -4.58 16 13 C 0.03 1.71 4.97 29.85 0.15 1.86 16 14 C -0.55 -33.16 9.11 25.60 0.23 -32.93 16 15 H 0.05 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.12 5.46 84.65 0.46 0.58 16 17 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 18 Si 0.97 46.07 29.54 68.60 2.03 48.09 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 C 0.53 15.85 6.77 87.94 0.60 16.44 16 23 O -0.49 -17.32 17.76 -2.86 -0.05 -17.37 16 24 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 25 H 0.08 0.19 6.42 -2.39 -0.02 0.17 16 26 H 0.06 0.32 7.21 -2.39 -0.02 0.31 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 0.86 6.26 -2.39 -0.01 0.84 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.45 6.63 8.27 -92.70 -0.77 5.86 16 35 H 0.10 3.64 8.00 -2.39 -0.02 3.62 16 36 H 0.09 3.61 7.86 -2.38 -0.02 3.59 16 37 H 0.04 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -80.20 344.75 2.75 -77.45 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.26 Total: 7.70 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.11 Total: 15.63 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -4.02 Total: -96.55 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -1.63 Total: -52.32 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -80.20 2.75 -77.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927472835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.807 kcal (2) G-P(sol) polarization free energy of solvation -80.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds