Wall clock time and date at job start Tue Mar 31 2020 05:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 C 1.53006 * 110.53478 * 300.70480 * 3 2 1 5 5 O 1.42895 * 109.47036 * 180.02562 * 4 3 2 6 6 C 1.42901 * 113.99948 * 179.97438 * 5 4 3 7 7 N 1.47312 * 110.60030 * 63.53100 * 3 2 1 8 8 C 1.34527 * 106.62206 * 118.68006 * 7 3 2 9 9 O 1.21532 * 123.77177 * 180.02562 * 8 7 3 10 10 N 1.33793 * 112.45410 * 0.02562 * 8 7 3 11 11 C 1.46501 * 124.17803 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47416 * 90.02083 * 11 10 8 13 13 C 1.53001 * 109.47514 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47269 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99718 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99672 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00258 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99659 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47195 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46895 * 120.00282 * 18 16 14 21 21 H 1.48498 * 109.47213 * 240.00343 * 18 16 14 22 22 C 1.35119 * 111.68825 * 359.90556 * 10 8 7 23 23 O 1.21234 * 127.33806 * 180.09834 * 22 10 8 24 24 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46678 * 299.99846 * 1 2 3 26 26 H 1.09003 * 109.47190 * 59.99875 * 1 2 3 27 27 H 1.09005 * 109.47134 * 240.00431 * 2 1 3 28 28 H 1.09003 * 109.47190 * 120.00125 * 2 1 3 29 29 H 1.09001 * 109.47002 * 299.99596 * 4 3 2 30 30 H 1.08993 * 109.46955 * 60.00033 * 4 3 2 31 31 H 1.08995 * 109.47392 * 299.99575 * 6 5 4 32 32 H 1.09003 * 109.47182 * 59.99587 * 6 5 4 33 33 H 1.08999 * 109.47444 * 179.97438 * 6 5 4 34 34 H 0.96995 * 126.68952 * 298.71666 * 7 3 2 35 35 H 1.08997 * 109.47013 * 210.02563 * 11 10 8 36 36 H 1.09002 * 109.46714 * 330.02233 * 11 10 8 37 37 H 1.09002 * 109.47422 * 300.00699 * 12 11 10 38 38 H 1.09007 * 109.47064 * 59.99880 * 12 11 10 39 39 H 1.09004 * 109.46764 * 300.00011 * 13 12 11 40 40 H 1.09002 * 109.46819 * 60.00025 * 13 12 11 41 41 H 0.96998 * 119.99521 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5291 2.1924 -1.2320 5 8 2.0186 3.5347 -1.2095 6 6 1.5978 4.3256 -2.3228 7 7 1.6333 2.1360 1.2344 8 6 2.7660 2.4934 1.8660 9 8 2.7899 3.0887 2.9253 10 7 3.8634 2.1201 1.1978 11 6 5.2318 2.3791 1.6524 12 6 5.7114 1.2118 2.5173 13 6 7.1402 1.4825 2.9927 14 6 7.6128 0.3324 3.8441 15 1 6.9596 -0.5078 4.0275 16 6 8.8796 0.3524 4.3881 17 7 9.6753 1.3753 4.1643 18 14 9.4651 -1.0730 5.4441 19 1 8.3886 -2.0911 5.5426 20 1 10.6693 -1.6845 4.8266 21 1 9.8033 -0.5766 6.8022 22 6 3.5546 1.4734 0.0523 23 8 4.3250 1.0141 -0.7634 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.8822 1.6924 -2.1339 30 1 0.4393 2.2025 -1.2250 31 1 1.9522 3.8695 -3.2471 32 1 0.5092 4.3804 -2.3387 33 1 2.0105 5.3303 -2.2315 34 1 0.7258 2.3021 1.5337 35 1 5.8878 2.4846 0.7884 36 1 5.2521 3.2979 2.2384 37 1 5.0553 1.1061 3.3813 38 1 5.6910 0.2929 1.9313 39 1 7.7966 1.5883 2.1288 40 1 7.1602 2.4013 3.5789 41 1 10.5666 1.3891 4.5467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927472836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:15 Heat of formation + Delta-G solvation = -102.397333 kcal Electronic energy + Delta-G solvation = -23317.083408 eV Core-core repulsion = 19811.831344 eV Total energy + Delta-G solvation = -3505.252064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44700 -38.62359 -38.15959 -36.53093 -35.61335 -33.87979 -32.65177 -31.14117 -29.33889 -27.36370 -26.62922 -25.07561 -23.64776 -23.31228 -21.05310 -20.62907 -20.01413 -17.92592 -17.12159 -16.81274 -16.34904 -16.29438 -15.99340 -15.36002 -15.22343 -14.85549 -14.38796 -14.28162 -14.13883 -13.93760 -13.86333 -13.08194 -12.80881 -12.55515 -12.39529 -12.13037 -11.85749 -11.75012 -11.43975 -11.34203 -10.95823 -10.82682 -10.75739 -10.47722 -10.10373 -9.98860 -9.72227 -9.70070 -9.50970 -9.23307 -8.92640 -8.31149 -5.95983 -3.97951 1.74513 2.38728 3.05125 3.20805 3.27770 3.34930 3.41927 3.46604 3.85405 4.30310 4.41263 4.50243 4.72366 4.83108 4.89056 4.94611 5.02076 5.07255 5.20328 5.27069 5.37163 5.40193 5.53363 5.58899 5.74580 5.78543 5.83709 5.84563 6.09353 6.58365 6.67982 6.80227 6.81257 7.06811 7.27636 7.53257 7.69555 7.83190 8.02957 8.30226 8.45840 9.08102 9.65676 11.15547 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024813 B = 0.003788 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.166019 B = 7389.421883 C = 7664.787446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.123 3.877 4 C 0.066 3.934 5 O -0.384 6.384 6 C 0.034 3.966 7 N -0.718 5.718 8 C 0.708 3.292 9 O -0.540 6.540 10 N -0.567 5.567 11 C 0.116 3.884 12 C -0.123 4.123 13 C 0.025 3.975 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.538 3.462 23 O -0.464 6.464 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.434 0.566 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.021 0.979 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.259 1.455 -14.132 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C 0.032 3.968 4 C -0.012 4.012 5 O -0.303 6.303 6 C -0.063 4.063 7 N -0.383 5.383 8 C 0.409 3.591 9 O -0.413 6.413 10 N -0.312 5.312 11 C -0.003 4.003 12 C -0.161 4.161 13 C -0.013 4.013 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.324 3.676 23 O -0.334 6.334 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.278 0.722 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.388 1.696 -13.789 25.504 hybrid contribution -0.161 -0.685 0.465 0.843 sum -21.549 1.011 -13.324 25.356 Atomic orbital electron populations 1.21820 0.94082 1.02956 1.02174 1.21719 0.97388 0.91465 1.05048 1.21520 0.93586 0.95008 0.86715 1.22721 0.98759 0.83743 0.96012 1.87954 1.74199 1.22126 1.46016 1.22767 0.98981 0.95901 0.88610 1.45462 1.08117 1.61895 1.22837 1.15823 0.80916 0.79053 0.83293 1.91010 1.85553 1.43985 1.20736 1.46596 1.09461 1.53002 1.22134 1.22076 0.76574 1.01566 1.00128 1.22006 1.00820 0.95505 0.97788 1.19041 0.88428 0.97473 0.96355 1.21228 0.99101 1.04715 1.30571 0.92660 1.25015 0.96828 0.96031 0.96581 1.69974 1.08266 1.29993 1.45189 0.86526 0.78659 0.82555 0.80204 1.19773 1.21014 1.20994 1.20481 0.89760 0.76458 0.80896 1.90783 1.56791 1.44410 1.41368 0.91367 0.92208 0.92121 0.89005 0.89676 0.90780 0.91019 0.93743 0.93920 0.89298 0.72151 0.89175 0.88898 0.92611 0.92929 0.96215 0.96111 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.44 37.16 0.35 -0.44 16 2 C -0.12 -0.94 5.29 -26.73 -0.14 -1.09 16 3 C 0.12 1.31 0.81 -132.09 -0.11 1.20 16 4 C 0.07 0.56 4.84 37.16 0.18 0.74 16 5 O -0.38 -4.21 10.14 -35.23 -0.36 -4.57 16 6 C 0.03 0.25 11.01 101.05 1.11 1.36 16 7 N -0.72 -8.12 5.42 -52.93 -0.29 -8.41 16 8 C 0.71 11.56 8.63 -88.02 -0.76 10.80 16 9 O -0.54 -10.72 17.48 5.34 0.09 -10.63 16 10 N -0.57 -9.65 2.61 -120.64 -0.32 -9.96 16 11 C 0.12 2.22 5.70 -4.04 -0.02 2.19 16 12 C -0.12 -2.72 5.48 -26.73 -0.15 -2.86 16 13 C 0.02 0.66 4.97 -27.88 -0.14 0.52 16 14 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16 18 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.54 8.26 6.62 -10.40 -0.07 8.19 16 23 O -0.46 -8.19 17.78 5.60 0.10 -8.09 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.30 7.29 -51.93 -0.38 -0.08 16 26 H 0.06 0.24 6.50 -51.93 -0.34 -0.10 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.41 6.52 -51.93 -0.34 0.07 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.43 3.67 8.31 -40.82 -0.34 3.33 16 35 H 0.09 1.68 8.02 -51.93 -0.42 1.26 16 36 H 0.09 1.78 7.86 -51.93 -0.41 1.37 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -35.66 345.06 -6.41 -42.08 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -6.41 Total: -2.82 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.15 Total: 6.72 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.13 Total: -45.08 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.16 Total: -23.28 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.66 -6.41 -42.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927472836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.319 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds