Wall clock time and date at job start Tue Mar 31 2020 05:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 C 1.53006 * 110.53478 * 300.70480 * 3 2 1 5 5 O 1.42895 * 109.47036 * 180.02562 * 4 3 2 6 6 C 1.42901 * 113.99948 * 179.97438 * 5 4 3 7 7 N 1.47312 * 110.60030 * 63.53100 * 3 2 1 8 8 C 1.34527 * 106.62206 * 118.68006 * 7 3 2 9 9 O 1.21532 * 123.77177 * 180.02562 * 8 7 3 10 10 N 1.33793 * 112.45410 * 0.02562 * 8 7 3 11 11 C 1.46501 * 124.17803 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47416 * 90.02083 * 11 10 8 13 13 C 1.53001 * 109.47514 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47269 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99718 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99672 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00258 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99659 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47195 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46895 * 120.00282 * 18 16 14 21 21 H 1.48498 * 109.47213 * 240.00343 * 18 16 14 22 22 C 1.35119 * 111.68825 * 359.90556 * 10 8 7 23 23 O 1.21234 * 127.33806 * 180.09834 * 22 10 8 24 24 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46678 * 299.99846 * 1 2 3 26 26 H 1.09003 * 109.47190 * 59.99875 * 1 2 3 27 27 H 1.09005 * 109.47134 * 240.00431 * 2 1 3 28 28 H 1.09003 * 109.47190 * 120.00125 * 2 1 3 29 29 H 1.09001 * 109.47002 * 299.99596 * 4 3 2 30 30 H 1.08993 * 109.46955 * 60.00033 * 4 3 2 31 31 H 1.08995 * 109.47392 * 299.99575 * 6 5 4 32 32 H 1.09003 * 109.47182 * 59.99587 * 6 5 4 33 33 H 1.08999 * 109.47444 * 179.97438 * 6 5 4 34 34 H 0.96995 * 126.68952 * 298.71666 * 7 3 2 35 35 H 1.08997 * 109.47013 * 210.02563 * 11 10 8 36 36 H 1.09002 * 109.46714 * 330.02233 * 11 10 8 37 37 H 1.09002 * 109.47422 * 300.00699 * 12 11 10 38 38 H 1.09007 * 109.47064 * 59.99880 * 12 11 10 39 39 H 1.09004 * 109.46764 * 300.00011 * 13 12 11 40 40 H 1.09002 * 109.46819 * 60.00025 * 13 12 11 41 41 H 0.96998 * 119.99521 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5291 2.1924 -1.2320 5 8 2.0186 3.5347 -1.2095 6 6 1.5978 4.3256 -2.3228 7 7 1.6333 2.1360 1.2344 8 6 2.7660 2.4934 1.8660 9 8 2.7899 3.0887 2.9253 10 7 3.8634 2.1201 1.1978 11 6 5.2318 2.3791 1.6524 12 6 5.7114 1.2118 2.5173 13 6 7.1402 1.4825 2.9927 14 6 7.6128 0.3324 3.8441 15 1 6.9596 -0.5078 4.0275 16 6 8.8796 0.3524 4.3881 17 7 9.6753 1.3753 4.1643 18 14 9.4651 -1.0730 5.4441 19 1 8.3886 -2.0911 5.5426 20 1 10.6693 -1.6845 4.8266 21 1 9.8033 -0.5766 6.8022 22 6 3.5546 1.4734 0.0523 23 8 4.3250 1.0141 -0.7634 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.8822 1.6924 -2.1339 30 1 0.4393 2.2025 -1.2250 31 1 1.9522 3.8695 -3.2471 32 1 0.5092 4.3804 -2.3387 33 1 2.0105 5.3303 -2.2315 34 1 0.7258 2.3021 1.5337 35 1 5.8878 2.4846 0.7884 36 1 5.2521 3.2979 2.2384 37 1 5.0553 1.1061 3.3813 38 1 5.6910 0.2929 1.9313 39 1 7.7966 1.5883 2.1288 40 1 7.1602 2.4013 3.5789 41 1 10.5666 1.3891 4.5467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927472836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:14 Heat of formation + Delta-G solvation = -128.492241 kcal Electronic energy + Delta-G solvation = -23318.214968 eV Core-core repulsion = 19811.831344 eV Total energy + Delta-G solvation = -3506.383624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.62877 -39.81434 -39.10751 -37.52831 -37.13771 -35.62842 -34.04612 -32.79163 -30.04392 -29.09438 -27.42274 -26.06735 -25.30578 -24.37802 -22.63875 -21.78937 -21.44185 -19.12541 -18.50410 -17.96053 -17.86852 -17.24848 -17.07214 -16.65182 -16.35910 -16.25442 -15.95357 -15.74834 -15.21834 -14.93469 -14.79287 -14.48411 -14.07007 -13.69341 -13.43867 -13.35769 -13.15392 -12.90400 -12.73871 -12.57221 -12.42307 -12.34575 -12.03931 -11.91109 -11.72523 -11.59442 -11.37887 -11.15914 -10.77677 -10.68468 -10.58523 -10.45522 -8.22294 -6.33802 0.53551 1.16013 1.38899 1.39764 1.53191 1.94231 2.07647 2.40024 2.53530 2.81170 3.10828 3.55717 3.66991 3.84840 4.10548 4.21247 4.23921 4.29507 4.31502 4.34253 4.40033 4.49237 4.50945 4.58827 4.73339 4.81950 4.86949 4.98077 5.04872 5.08207 5.11102 5.38720 5.43832 5.62220 5.77986 5.79290 6.03850 6.08644 6.19176 6.33758 6.80615 7.09055 7.35068 8.89990 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024813 B = 0.003788 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.166019 B = 7389.421883 C = 7664.787446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.133 3.867 4 C 0.065 3.935 5 O -0.420 6.420 6 C 0.029 3.971 7 N -0.691 5.691 8 C 0.703 3.297 9 O -0.582 6.582 10 N -0.577 5.577 11 C 0.125 3.875 12 C -0.103 4.103 13 C 0.029 3.971 14 C -0.545 4.545 15 H 0.057 0.943 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.276 1.276 22 C 0.528 3.472 23 O -0.493 6.493 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.451 0.549 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.001 0.999 40 H -0.002 1.002 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.619 0.176 -15.000 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.043 3.957 4 C -0.012 4.012 5 O -0.340 6.340 6 C -0.066 4.066 7 N -0.357 5.357 8 C 0.404 3.596 9 O -0.459 6.459 10 N -0.322 5.322 11 C 0.004 3.996 12 C -0.141 4.141 13 C -0.009 4.009 14 C -0.583 4.583 15 H 0.075 0.925 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.792 3.208 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.202 1.202 22 C 0.316 3.684 23 O -0.364 6.364 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.298 0.702 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.019 0.981 40 H 0.017 0.983 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.819 0.403 -14.699 27.993 hybrid contribution 0.578 -0.257 0.670 0.921 sum -23.242 0.146 -14.030 27.148 Atomic orbital electron populations 1.21839 0.91231 1.04117 1.03400 1.21790 0.99696 0.89044 1.04833 1.21745 0.89658 0.97115 0.87232 1.22912 1.00855 0.82763 0.94719 1.87908 1.75256 1.23256 1.47600 1.22917 1.00487 0.95361 0.87877 1.45331 1.07510 1.60415 1.22398 1.15964 0.81782 0.78883 0.82929 1.90978 1.86209 1.46081 1.22631 1.46598 1.08772 1.53674 1.23113 1.21688 0.78414 0.99878 0.99602 1.21690 0.97944 0.96659 0.97858 1.18908 0.90832 0.96042 0.95093 1.21625 0.99813 1.05447 1.31436 0.92481 1.25987 0.96855 0.99048 0.97841 1.70097 1.08786 1.32050 1.46131 0.85356 0.78347 0.78866 0.78215 1.18760 1.20030 1.20161 1.21363 0.92103 0.75193 0.79694 1.90758 1.58250 1.45390 1.41974 0.90352 0.91811 0.90030 0.88101 0.91203 0.89670 0.87054 0.92970 0.91573 0.89631 0.70155 0.89023 0.89422 0.93346 0.93078 0.98105 0.98329 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.44 71.98 0.68 -0.26 16 2 C -0.12 -1.55 5.29 30.59 0.16 -1.39 16 3 C 0.13 2.55 0.81 2.99 0.00 2.56 16 4 C 0.06 0.90 4.84 71.98 0.35 1.25 16 5 O -0.42 -8.37 10.14 -148.98 -1.51 -9.88 16 6 C 0.03 0.36 11.01 113.37 1.25 1.61 16 7 N -0.69 -14.47 5.42 -439.81 -2.38 -16.85 16 8 C 0.70 22.98 8.63 179.44 1.55 24.52 16 9 O -0.58 -23.58 17.48 -3.82 -0.07 -23.65 16 10 N -0.58 -19.95 2.61 -772.63 -2.02 -21.97 16 11 C 0.13 4.99 5.70 86.38 0.49 5.48 16 12 C -0.10 -4.74 5.48 30.59 0.17 -4.57 16 13 C 0.03 1.62 4.97 29.85 0.15 1.77 16 14 C -0.55 -32.63 9.11 25.60 0.23 -32.40 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 0.04 5.46 84.65 0.46 0.50 16 17 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 18 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 C 0.53 16.05 6.62 87.88 0.58 16.63 16 23 O -0.49 -17.44 17.78 -2.89 -0.05 -17.49 16 24 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.06 0.38 7.29 -2.38 -0.02 0.36 16 26 H 0.08 0.21 6.50 -2.39 -0.02 0.19 16 27 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.11 0.70 6.52 -2.39 -0.02 0.68 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.45 6.46 8.31 -92.71 -0.77 5.69 16 35 H 0.09 3.58 8.02 -2.39 -0.02 3.56 16 36 H 0.09 3.55 7.86 -2.39 -0.02 3.53 16 37 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -79.56 345.06 2.61 -76.95 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.26 Total: 7.29 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 6.07 Total: 15.70 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -4.12 Total: -96.68 kcal Atomic # 8 Polarization: -49.39 SS G_CDS: -1.63 Total: -51.01 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -79.56 2.61 -76.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927472836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.547 kcal (2) G-P(sol) polarization free energy of solvation -79.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds