Wall clock time and date at job start Tue Mar 31 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.05886 * 2 1 4 4 C 1.54255 * 110.07905 * 121.50170 * 2 1 3 5 5 C 1.54539 * 103.09901 * 120.30094 * 4 2 1 6 6 C 1.52997 * 110.61335 * 135.00613 * 5 4 2 7 7 N 1.46907 * 110.60956 * 257.82595 * 5 4 2 8 8 C 1.46902 * 110.99593 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47006 * 179.97438 * 8 7 5 10 10 O 1.21281 * 119.99536 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00055 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99781 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.46823 * 179.97438 * 12 11 9 14 14 H 1.08004 * 120.00267 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00174 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99632 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00360 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47160 * 59.99892 * 17 15 13 19 19 H 1.48495 * 109.47096 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47067 * 300.00140 * 17 15 13 21 21 C 1.51781 * 103.52810 * 16.49335 * 5 4 2 22 22 O 1.20827 * 126.43085 * 149.36988 * 21 5 4 23 23 O 1.34527 * 107.14410 * 329.37069 * 21 5 4 24 24 H 1.09002 * 109.47153 * 298.49547 * 1 2 3 25 25 H 1.09001 * 109.46832 * 178.49737 * 1 2 3 26 26 H 1.09004 * 109.47261 * 58.49719 * 1 2 3 27 27 H 1.09000 * 109.46471 * 60.70304 * 3 2 1 28 28 H 1.08998 * 109.47017 * 180.70066 * 3 2 1 29 29 H 1.08994 * 109.47314 * 300.70515 * 3 2 1 30 30 H 1.08996 * 110.69385 * 238.70318 * 4 2 1 31 31 H 1.08999 * 110.68911 * 1.72932 * 4 2 1 32 32 H 1.09005 * 109.47263 * 59.99529 * 6 5 4 33 33 H 1.09000 * 109.47785 * 179.97438 * 6 5 4 34 34 H 1.09008 * 109.46900 * 300.00373 * 6 5 4 35 35 H 1.00891 * 111.00278 * 303.95189 * 7 5 4 36 36 H 1.08997 * 109.47799 * 300.00393 * 8 7 5 37 37 H 1.09005 * 109.47102 * 60.00100 * 8 7 5 38 38 H 0.97000 * 119.99938 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.46906 * 299.99749 * 12 11 9 40 40 H 1.08994 * 109.47062 * 59.99868 * 12 11 9 41 41 H 0.96994 * 119.99974 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0596 -0.7570 1.2353 5 6 2.8931 -1.9007 0.6144 6 6 4.2345 -2.0428 1.3364 7 7 2.1478 -3.1660 0.6575 8 6 2.9325 -4.2594 0.0686 9 6 2.1378 -5.5383 0.1311 10 8 1.0269 -5.5386 0.6178 11 7 2.6615 -6.6815 -0.3539 12 6 1.8886 -7.9246 -0.2937 13 6 2.6936 -9.0463 -0.8977 14 1 3.6819 -8.8525 -1.2879 15 6 2.1685 -10.3200 -0.9523 16 7 0.9652 -10.5561 -0.4768 17 14 3.1665 -11.7105 -1.7004 18 1 4.4316 -11.8763 -0.9404 19 1 2.3831 -12.9705 -1.6394 20 1 3.4782 -11.3900 -3.1165 21 6 3.1031 -1.4490 -0.8193 22 8 4.0556 -1.7009 -1.5187 23 8 2.0298 -0.7156 -1.1653 24 1 -0.3633 0.4903 0.9032 25 1 -0.3633 -1.0273 -0.0269 26 1 -0.3634 0.5370 -0.8762 27 1 1.7069 1.9509 0.8963 28 1 3.1446 1.4261 -0.0126 29 1 1.6865 1.9585 -0.8835 30 1 2.6893 -0.1082 1.8439 31 1 1.2345 -1.1551 1.8259 32 1 4.0589 -2.2651 2.3889 33 1 4.8062 -2.8535 0.8847 34 1 4.7939 -1.1112 1.2503 35 1 1.8679 -3.3888 1.6009 36 1 3.1613 -4.0237 -0.9707 37 1 3.8611 -4.3815 0.6263 38 1 3.5501 -6.6812 -0.7429 39 1 1.6596 -8.1600 0.7457 40 1 0.9603 -7.8027 -0.8517 41 1 0.5960 -11.4522 -0.5148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930879201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:11 Heat of formation + Delta-G solvation = -119.878405 kcal Electronic energy + Delta-G solvation = -22886.856423 eV Core-core repulsion = 19380.846322 eV Total energy + Delta-G solvation = -3506.010100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62120 -38.88359 -37.96545 -36.44852 -34.17802 -33.85307 -32.33522 -31.30360 -28.00514 -27.70435 -27.42834 -25.51097 -24.13083 -22.38277 -21.62104 -19.82232 -19.45448 -17.65460 -17.02348 -16.60594 -16.21418 -15.72182 -15.46527 -15.19594 -14.95413 -14.50924 -14.18716 -14.03436 -13.87407 -13.63792 -13.32078 -12.93664 -12.79687 -12.57426 -12.35383 -12.29535 -12.06902 -12.01629 -11.93181 -11.84397 -11.46089 -11.17898 -10.98802 -10.85418 -10.72166 -10.31363 -10.17778 -9.40748 -9.12268 -8.72877 -8.62848 -7.87973 -6.15853 -4.22797 1.72193 2.99727 3.26436 3.31047 3.32535 3.34351 3.54814 3.70400 3.94878 4.21850 4.24837 4.38740 4.50619 4.58260 4.69956 5.09410 5.16384 5.19682 5.20534 5.22944 5.28721 5.34388 5.34764 5.46943 5.48715 5.52018 5.59127 5.70392 5.78983 5.94501 6.52484 6.65053 7.09956 7.29817 7.30975 7.43214 7.52163 7.67213 7.97596 8.62056 8.78121 9.08890 9.43691 10.94356 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033176 B = 0.003172 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.780812 B = 8823.921876 C = 9082.508614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.111 3.889 3 C -0.163 4.163 4 C -0.139 4.139 5 C 0.051 3.949 6 C -0.175 4.175 7 N -0.640 5.640 8 C 0.029 3.971 9 C 0.500 3.500 10 O -0.544 6.544 11 N -0.712 5.712 12 C 0.251 3.749 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.505 3.495 22 O -0.444 6.444 23 O -0.336 6.336 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.363 0.637 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.391 0.609 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.982 23.878 5.349 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.075 3.925 3 C -0.220 4.220 4 C -0.176 4.176 5 C -0.042 4.042 6 C -0.234 4.234 7 N -0.276 5.276 8 C -0.103 4.103 9 C 0.284 3.716 10 O -0.422 6.422 11 N -0.361 5.361 12 C 0.131 3.869 13 C -0.583 4.583 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.343 3.657 22 O -0.324 6.324 23 O -0.254 6.254 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.185 0.815 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.223 0.777 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.026 23.722 4.603 24.353 hybrid contribution 1.614 -1.081 0.131 1.947 sum 4.641 22.641 4.734 23.592 Atomic orbital electron populations 1.21966 0.91023 1.04499 1.02957 1.22797 0.96252 0.91193 0.82295 1.22280 1.01742 0.94296 1.03730 1.23161 1.01160 0.95808 0.97505 1.22402 0.94602 0.92992 0.94238 1.22408 0.96216 1.03802 1.01006 1.60202 1.39789 0.99507 1.28116 1.22022 0.95539 0.90641 1.02092 1.20184 0.87145 0.84759 0.79547 1.90661 1.19790 1.85957 1.45826 1.46442 1.20265 1.09614 1.59791 1.19098 0.91660 0.78536 0.97628 1.21200 1.02462 0.93274 1.41331 0.91927 1.24950 0.95076 0.98778 0.95188 1.69963 1.15505 1.22037 1.44821 0.86466 0.79841 0.80856 0.79699 1.20071 1.21060 1.20027 1.22972 0.79532 0.75464 0.87759 1.90699 1.26778 1.55452 1.59488 1.87143 1.41840 1.58736 1.37640 0.90337 0.90235 0.91386 0.90061 0.92007 0.90926 0.88666 0.87589 0.90939 0.90671 0.91395 0.81456 0.88399 0.91675 0.77674 0.95535 0.95484 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.72 37.16 0.32 -0.80 16 2 C 0.11 0.96 1.28 -89.96 -0.11 0.84 16 3 C -0.16 -1.02 8.72 37.16 0.32 -0.69 16 4 C -0.14 -1.04 5.70 -25.27 -0.14 -1.19 16 5 C 0.05 0.54 0.88 -131.41 -0.12 0.43 16 6 C -0.18 -1.56 8.05 37.16 0.30 -1.26 16 7 N -0.64 -8.49 5.74 -101.02 -0.58 -9.07 16 8 C 0.03 0.44 5.52 -4.97 -0.03 0.41 16 9 C 0.50 10.04 7.87 -10.98 -0.09 9.96 16 10 O -0.54 -12.92 16.20 5.56 0.09 -12.83 16 11 N -0.71 -15.26 5.55 -61.47 -0.34 -15.60 16 12 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 13 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 14 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 17 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 21 C 0.50 6.90 6.76 36.54 0.25 7.15 16 22 O -0.44 -7.19 17.30 -18.29 -0.32 -7.51 16 23 O -0.34 -4.40 10.44 -39.60 -0.41 -4.81 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.48 7.40 -51.93 -0.38 0.10 16 31 H 0.11 0.73 7.54 -51.93 -0.39 0.33 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.75 6.31 -51.93 -0.33 0.43 16 34 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 35 H 0.36 4.55 8.39 -39.30 -0.33 4.22 16 36 H 0.10 1.53 7.04 -51.93 -0.37 1.16 16 37 H 0.07 0.83 6.28 -51.93 -0.33 0.50 16 38 H 0.39 7.27 8.32 -40.82 -0.34 6.93 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -34.27 341.62 -6.66 -40.93 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.22 Total: 5.27 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 0.26 Total: 7.98 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.18 Total: -50.22 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.64 Total: -25.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.27 -6.66 -40.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930879201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.952 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds