Wall clock time and date at job start Tue Mar 31 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 110.05886 * 2 1 4 4 C 1.54255 * 110.07905 * 121.50170 * 2 1 3 5 5 C 1.54539 * 103.09901 * 120.30094 * 4 2 1 6 6 C 1.52997 * 110.61335 * 135.00613 * 5 4 2 7 7 N 1.46907 * 110.60956 * 257.82595 * 5 4 2 8 8 C 1.46902 * 110.99593 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47006 * 179.97438 * 8 7 5 10 10 O 1.21281 * 119.99536 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00055 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99781 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.46823 * 179.97438 * 12 11 9 14 14 H 1.08004 * 120.00267 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00174 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99632 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00360 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47160 * 59.99892 * 17 15 13 19 19 H 1.48495 * 109.47096 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47067 * 300.00140 * 17 15 13 21 21 C 1.51781 * 103.52810 * 16.49335 * 5 4 2 22 22 O 1.20827 * 126.43085 * 149.36988 * 21 5 4 23 23 O 1.34527 * 107.14410 * 329.37069 * 21 5 4 24 24 H 1.09002 * 109.47153 * 298.49547 * 1 2 3 25 25 H 1.09001 * 109.46832 * 178.49737 * 1 2 3 26 26 H 1.09004 * 109.47261 * 58.49719 * 1 2 3 27 27 H 1.09000 * 109.46471 * 60.70304 * 3 2 1 28 28 H 1.08998 * 109.47017 * 180.70066 * 3 2 1 29 29 H 1.08994 * 109.47314 * 300.70515 * 3 2 1 30 30 H 1.08996 * 110.69385 * 238.70318 * 4 2 1 31 31 H 1.08999 * 110.68911 * 1.72932 * 4 2 1 32 32 H 1.09005 * 109.47263 * 59.99529 * 6 5 4 33 33 H 1.09000 * 109.47785 * 179.97438 * 6 5 4 34 34 H 1.09008 * 109.46900 * 300.00373 * 6 5 4 35 35 H 1.00891 * 111.00278 * 303.95189 * 7 5 4 36 36 H 1.08997 * 109.47799 * 300.00393 * 8 7 5 37 37 H 1.09005 * 109.47102 * 60.00100 * 8 7 5 38 38 H 0.97000 * 119.99938 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.46906 * 299.99749 * 12 11 9 40 40 H 1.08994 * 109.47062 * 59.99868 * 12 11 9 41 41 H 0.96994 * 119.99974 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0596 -0.7570 1.2353 5 6 2.8931 -1.9007 0.6144 6 6 4.2345 -2.0428 1.3364 7 7 2.1478 -3.1660 0.6575 8 6 2.9325 -4.2594 0.0686 9 6 2.1378 -5.5383 0.1311 10 8 1.0269 -5.5386 0.6178 11 7 2.6615 -6.6815 -0.3539 12 6 1.8886 -7.9246 -0.2937 13 6 2.6936 -9.0463 -0.8977 14 1 3.6819 -8.8525 -1.2879 15 6 2.1685 -10.3200 -0.9523 16 7 0.9652 -10.5561 -0.4768 17 14 3.1665 -11.7105 -1.7004 18 1 4.4316 -11.8763 -0.9404 19 1 2.3831 -12.9705 -1.6394 20 1 3.4782 -11.3900 -3.1165 21 6 3.1031 -1.4490 -0.8193 22 8 4.0556 -1.7009 -1.5187 23 8 2.0298 -0.7156 -1.1653 24 1 -0.3633 0.4903 0.9032 25 1 -0.3633 -1.0273 -0.0269 26 1 -0.3634 0.5370 -0.8762 27 1 1.7069 1.9509 0.8963 28 1 3.1446 1.4261 -0.0126 29 1 1.6865 1.9585 -0.8835 30 1 2.6893 -0.1082 1.8439 31 1 1.2345 -1.1551 1.8259 32 1 4.0589 -2.2651 2.3889 33 1 4.8062 -2.8535 0.8847 34 1 4.7939 -1.1112 1.2503 35 1 1.8679 -3.3888 1.6009 36 1 3.1613 -4.0237 -0.9707 37 1 3.8611 -4.3815 0.6263 38 1 3.5501 -6.6812 -0.7429 39 1 1.6596 -8.1600 0.7457 40 1 0.9603 -7.8027 -0.8517 41 1 0.5960 -11.4522 -0.5148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930879201.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:10 Heat of formation + Delta-G solvation = -146.201896 kcal Electronic energy + Delta-G solvation = -22887.997895 eV Core-core repulsion = 19380.846322 eV Total energy + Delta-G solvation = -3507.151573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.50622 -40.53913 -38.96449 -37.52321 -36.12697 -34.63692 -34.36597 -32.32803 -29.67854 -28.41367 -28.15399 -26.94531 -25.03010 -24.36529 -22.39803 -21.49895 -20.36642 -19.20072 -18.13265 -17.94729 -17.39249 -17.21816 -16.73402 -16.64636 -16.35070 -15.82319 -15.34119 -15.16504 -14.78682 -14.61904 -14.49175 -14.21099 -13.92013 -13.81179 -13.52285 -13.38881 -13.10515 -13.00195 -12.96341 -12.74186 -12.67953 -12.64078 -12.47665 -12.25186 -11.87808 -11.52968 -11.45821 -11.09989 -10.82356 -10.80654 -9.88436 -9.65800 -8.30504 -6.47193 0.73413 1.41996 1.46067 1.54236 1.69042 2.12136 2.24810 2.42688 2.82164 3.04150 3.07169 3.29656 3.58842 3.79377 3.83208 3.95939 4.01807 4.15581 4.27083 4.57546 4.62863 4.63688 4.72171 4.76286 4.85256 4.88031 4.95937 5.07792 5.09240 5.21140 5.22614 5.33853 5.45507 5.53498 5.68378 5.81565 5.83018 6.11700 6.29838 6.62899 6.86117 7.21387 7.42977 8.81473 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033176 B = 0.003172 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.780812 B = 8823.921876 C = 9082.508614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.099 3.901 3 C -0.159 4.159 4 C -0.130 4.130 5 C 0.056 3.944 6 C -0.173 4.173 7 N -0.654 5.654 8 C 0.048 3.952 9 C 0.498 3.502 10 O -0.583 6.583 11 N -0.709 5.709 12 C 0.269 3.731 13 C -0.560 4.560 14 H 0.082 0.918 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.284 1.284 20 H -0.265 1.265 21 C 0.497 3.503 22 O -0.481 6.481 23 O -0.364 6.364 24 H 0.110 0.890 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.369 0.631 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.407 0.593 39 H -0.007 1.007 40 H -0.014 1.014 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.676 25.187 6.261 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.064 3.936 3 C -0.216 4.216 4 C -0.168 4.168 5 C -0.037 4.037 6 C -0.232 4.232 7 N -0.291 5.291 8 C -0.084 4.084 9 C 0.285 3.715 10 O -0.464 6.464 11 N -0.360 5.360 12 C 0.146 3.854 13 C -0.597 4.597 14 H 0.100 0.900 15 C -0.195 4.195 16 N -0.568 5.568 17 Si 0.807 3.193 18 H -0.185 1.185 19 H -0.209 1.209 20 H -0.189 1.189 21 C 0.337 3.663 22 O -0.365 6.365 23 O -0.282 6.282 24 H 0.128 0.872 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.192 0.808 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.242 0.758 39 H 0.011 0.989 40 H 0.004 0.996 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.741 25.084 5.524 26.119 hybrid contribution 0.980 -1.382 -0.147 1.701 sum 5.721 23.702 5.377 24.969 Atomic orbital electron populations 1.22004 0.90582 1.03230 1.04482 1.23248 0.96720 0.92236 0.81423 1.22300 1.01579 0.92649 1.05097 1.23281 1.01511 0.94784 0.97178 1.22466 0.96098 0.92384 0.92758 1.22418 0.94826 1.04165 1.01777 1.60119 1.40586 0.99895 1.28544 1.21804 0.95712 0.88228 1.02612 1.21081 0.86891 0.85784 0.77769 1.90636 1.21783 1.86695 1.47253 1.46203 1.20653 1.08640 1.60459 1.18538 0.90982 0.81073 0.94826 1.21594 1.03237 0.93595 1.41312 0.90017 1.26050 0.96147 1.01904 0.95366 1.70122 1.17598 1.22910 1.46166 0.85218 0.78284 0.76704 0.79087 1.18537 1.20904 1.18920 1.23546 0.79048 0.75024 0.88701 1.90660 1.28348 1.56691 1.60765 1.87117 1.41579 1.59071 1.40435 0.87190 0.92723 0.91624 0.86915 0.92195 0.91411 0.85246 0.86641 0.88727 0.91997 0.89944 0.80803 0.88865 0.88597 0.75782 0.98936 0.99613 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.72 71.98 0.63 -1.38 16 2 C 0.10 1.52 1.28 -10.37 -0.01 1.51 16 3 C -0.16 -1.55 8.72 71.98 0.63 -0.93 16 4 C -0.13 -1.56 5.70 31.54 0.18 -1.38 16 5 C 0.06 1.08 0.88 3.65 0.00 1.09 16 6 C -0.17 -2.58 8.05 71.98 0.58 -2.00 16 7 N -0.65 -16.69 5.74 -473.52 -2.72 -19.41 16 8 C 0.05 1.42 5.52 85.56 0.47 1.89 16 9 C 0.50 20.32 7.87 87.66 0.69 21.01 16 10 O -0.58 -28.58 16.20 -3.03 -0.05 -28.63 16 11 N -0.71 -30.92 5.55 -466.79 -2.59 -33.51 16 12 C 0.27 14.99 5.43 85.63 0.46 15.45 16 13 C -0.56 -31.01 9.28 25.60 0.24 -30.77 16 14 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 15 C 0.01 0.29 5.46 84.66 0.46 0.75 16 16 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 17 Si 0.98 42.89 29.54 68.60 2.03 44.92 16 18 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 21 C 0.50 13.33 6.76 71.58 0.48 13.81 16 22 O -0.48 -15.69 17.30 21.52 0.37 -15.32 16 23 O -0.36 -9.45 10.44 -54.76 -0.57 -10.02 16 24 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.13 0.70 7.40 -2.39 -0.02 0.69 16 31 H 0.12 1.22 7.54 -2.39 -0.02 1.20 16 32 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.06 1.10 6.31 -2.39 -0.02 1.09 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.37 8.75 8.39 -89.70 -0.75 7.99 16 36 H 0.09 2.89 7.04 -2.39 -0.02 2.87 16 37 H 0.10 2.25 6.28 -2.38 -0.01 2.23 16 38 H 0.41 14.98 8.32 -92.71 -0.77 14.21 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -78.20 341.62 1.10 -77.10 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.47 Total: 22.05 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 4.81 Total: 19.04 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -5.02 Total: -109.14 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -0.25 Total: -53.96 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -78.20 1.10 -77.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930879201.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.103 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds