Wall clock time and date at job start Tue Mar 31 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 110.39429 * 2 1 4 4 C 1.54859 * 110.46862 * 237.46984 * 2 1 3 5 5 C 1.54496 * 102.01169 * 268.13543 * 4 2 1 6 6 C 1.52999 * 110.36427 * 225.71399 * 5 4 2 7 7 N 1.46895 * 110.36824 * 103.50035 * 5 4 2 8 8 C 1.46910 * 110.99703 * 181.53724 * 7 5 4 9 9 C 1.50700 * 109.46812 * 180.02562 * 8 7 5 10 10 O 1.21286 * 120.00120 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00000 * 179.97438 * 9 8 7 12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.51328 * 104.92207 * 344.60406 * 5 4 2 22 22 O 1.20824 * 125.08979 * 177.74192 * 21 5 4 23 23 O 1.34061 * 109.81207 * 357.74408 * 21 5 4 24 24 H 1.08992 * 109.47293 * 299.03432 * 1 2 3 25 25 H 1.09002 * 109.46853 * 59.03172 * 1 2 3 26 26 H 1.09002 * 109.47472 * 179.03045 * 1 2 3 27 27 H 1.08998 * 109.47522 * 180.96909 * 3 2 1 28 28 H 1.09002 * 109.47331 * 300.96191 * 3 2 1 29 29 H 1.08998 * 109.47515 * 60.96923 * 3 2 1 30 30 H 1.08993 * 110.92673 * 150.01592 * 4 2 1 31 31 H 1.08997 * 110.93611 * 26.25393 * 4 2 1 32 32 H 1.09005 * 109.47618 * 298.46222 * 6 5 4 33 33 H 1.08997 * 109.47476 * 58.46133 * 6 5 4 34 34 H 1.08998 * 109.47348 * 178.45865 * 6 5 4 35 35 H 1.00897 * 111.00017 * 305.48700 * 7 5 4 36 36 H 1.08998 * 109.47017 * 60.00119 * 8 7 5 37 37 H 1.09002 * 109.46670 * 299.99530 * 8 7 5 38 38 H 0.97003 * 119.99349 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47166 * 60.00164 * 12 11 9 40 40 H 1.08994 * 109.47507 * 299.99870 * 12 11 9 41 41 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0715 -0.7802 -1.2232 5 6 2.2300 -2.2063 -0.6505 6 6 3.5823 -2.7957 -1.0563 7 7 1.1365 -3.0691 -1.1171 8 6 1.2536 -4.4197 -0.5512 9 6 0.1176 -5.2742 -1.0517 10 8 -0.7085 -4.8042 -1.8052 11 7 0.0196 -6.5607 -0.6619 12 6 -1.0850 -7.3912 -1.1480 13 6 -0.9642 -8.7771 -0.5686 14 1 -0.1466 -9.0153 0.0957 15 6 -1.9009 -9.7392 -0.8815 16 7 -2.8967 -9.4490 -1.6901 17 14 -1.7554 -11.4549 -0.1572 18 1 -0.5560 -11.5236 0.7156 19 1 -2.9683 -11.7583 0.6443 20 1 -1.6267 -12.4465 -1.2551 21 6 2.1602 -2.0331 0.8512 22 8 2.2066 -2.9323 1.6570 23 8 2.0392 -0.7327 1.1535 24 1 -0.3633 0.4987 0.8984 25 1 -0.3633 0.5288 -0.8812 26 1 -0.3634 -1.0275 -0.0174 27 1 3.1528 1.4167 -0.0174 28 1 1.6942 1.9589 -0.8812 29 1 1.7223 1.9485 0.8985 30 1 3.0337 -0.3815 -1.5443 31 1 1.3523 -0.7684 -2.0422 32 1 3.6370 -2.8655 -2.1427 33 1 4.3831 -2.1519 -0.6929 34 1 3.6903 -3.7898 -0.6225 35 1 0.2384 -2.6632 -0.9012 36 1 1.2138 -4.3626 0.5366 37 1 2.2020 -4.8610 -0.8575 38 1 0.6805 -6.9366 -0.0596 39 1 -1.0455 -7.4479 -2.2359 40 1 -2.0334 -6.9502 -0.8414 41 1 -3.5555 -10.1261 -1.9106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930879217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:14 Heat of formation + Delta-G solvation = -121.322822 kcal Electronic energy + Delta-G solvation = -22996.774703 eV Core-core repulsion = 19490.701968 eV Total energy + Delta-G solvation = -3506.072735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83365 -38.86305 -38.04755 -36.37112 -34.15921 -33.75127 -32.32303 -31.45888 -28.28344 -27.71155 -27.37355 -25.54910 -23.96056 -22.33851 -21.72698 -19.77574 -19.53155 -17.64109 -17.03945 -16.84779 -16.54453 -15.72710 -15.49455 -15.16724 -14.83939 -14.60919 -14.35079 -14.00466 -13.72682 -13.59842 -13.06974 -12.83514 -12.76956 -12.59605 -12.41517 -12.28704 -12.15637 -12.06212 -11.93811 -11.77404 -11.49407 -11.25055 -10.93561 -10.89172 -10.81756 -10.61081 -10.30429 -9.36574 -9.08997 -8.72695 -8.48651 -7.86102 -6.15530 -4.22045 1.75849 2.86077 3.24814 3.31831 3.35194 3.37696 3.48106 3.67456 3.86879 4.14178 4.26249 4.29160 4.41092 4.50589 4.75483 5.10631 5.18589 5.20699 5.22448 5.23853 5.29767 5.33982 5.36594 5.48394 5.53378 5.57303 5.62926 5.68719 5.72863 5.86689 6.49988 6.59700 7.01332 7.25573 7.32250 7.45399 7.53076 7.68768 7.98235 8.64090 8.79506 9.11031 9.44531 10.94761 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034288 B = 0.003201 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.424269 B = 8745.476465 C = 8947.535697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 C -0.141 4.141 4 C -0.138 4.138 5 C 0.058 3.942 6 C -0.134 4.134 7 N -0.633 5.633 8 C 0.019 3.981 9 C 0.499 3.501 10 O -0.547 6.547 11 N -0.712 5.712 12 C 0.251 3.749 13 C -0.542 4.542 14 H 0.064 0.936 15 C 0.063 3.937 16 N -0.886 5.886 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.449 3.551 22 O -0.446 6.446 23 O -0.343 6.343 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.352 0.648 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.391 0.609 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.522 21.335 1.732 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.063 3.937 3 C -0.198 4.198 4 C -0.175 4.175 5 C -0.036 4.036 6 C -0.191 4.191 7 N -0.269 5.269 8 C -0.112 4.112 9 C 0.283 3.717 10 O -0.426 6.426 11 N -0.361 5.361 12 C 0.130 3.870 13 C -0.580 4.580 14 H 0.082 0.918 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.287 3.713 22 O -0.328 6.328 23 O -0.259 6.259 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.174 0.826 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.224 0.776 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.107 21.079 1.104 24.333 hybrid contribution -0.041 -1.108 1.546 1.903 sum 12.066 19.971 2.650 23.483 Atomic orbital electron populations 1.22304 0.92501 1.03569 1.04150 1.23243 0.94763 0.93203 0.82536 1.21854 1.02118 0.92216 1.03628 1.23261 1.04455 0.91758 0.98052 1.22421 0.96318 0.95298 0.89514 1.21801 0.92107 1.01635 1.03582 1.60543 1.04850 1.01367 1.60111 1.22197 0.99946 0.89426 0.99675 1.20243 0.86353 0.83163 0.81897 1.90655 1.42700 1.73010 1.36229 1.46429 1.30604 1.10584 1.48439 1.19104 0.84145 0.88380 0.95385 1.21278 1.11534 0.95299 1.29937 0.91814 1.24958 0.94880 0.99278 0.94952 1.69989 1.13376 1.34510 1.34459 0.86356 0.78131 0.83498 0.78900 1.19604 1.20814 1.20786 1.24488 0.72523 0.81833 0.92483 1.90686 1.43959 1.40584 1.57557 1.87058 1.76800 1.20973 1.41110 0.90805 0.89469 0.91884 0.91220 0.89783 0.91089 0.88187 0.86953 0.89754 0.91578 0.91064 0.82621 0.90457 0.87799 0.77629 0.95458 0.95596 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 8.78 37.15 0.33 -0.96 16 2 C 0.10 0.78 1.24 -89.64 -0.11 0.67 16 3 C -0.14 -0.74 8.92 37.16 0.33 -0.41 16 4 C -0.14 -1.03 5.52 -24.97 -0.14 -1.16 16 5 C 0.06 0.62 0.89 -131.66 -0.12 0.50 16 6 C -0.13 -1.24 8.19 37.16 0.30 -0.93 16 7 N -0.63 -8.56 5.71 -101.27 -0.58 -9.14 16 8 C 0.02 0.30 5.43 -4.97 -0.03 0.27 16 9 C 0.50 10.21 7.87 -10.98 -0.09 10.12 16 10 O -0.55 -13.15 16.20 5.55 0.09 -13.06 16 11 N -0.71 -15.45 5.55 -61.48 -0.34 -15.79 16 12 C 0.25 6.76 5.43 -5.20 -0.03 6.73 16 13 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 14 H 0.06 1.66 7.60 -52.49 -0.40 1.26 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 17 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.45 5.91 7.08 36.31 0.26 6.16 16 22 O -0.45 -7.29 15.62 -18.41 -0.29 -7.58 16 23 O -0.34 -4.03 10.48 -38.47 -0.40 -4.43 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.60 6.40 -51.93 -0.33 0.26 16 27 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.54 7.60 -51.93 -0.39 0.14 16 31 H 0.11 0.79 7.80 -51.93 -0.40 0.39 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.72 6.44 -51.93 -0.33 0.39 16 35 H 0.35 4.93 6.74 -39.29 -0.26 4.66 16 36 H 0.08 1.23 5.73 -51.93 -0.30 0.93 16 37 H 0.10 1.42 6.35 -51.93 -0.33 1.09 16 38 H 0.39 7.41 8.32 -40.82 -0.34 7.07 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -34.38 336.33 -6.48 -40.85 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.04 Total: 6.18 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 0.29 Total: 7.38 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.18 Total: -50.54 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.60 Total: -25.07 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.38 -6.48 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930879217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.471 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds