Wall clock time and date at job start Tue Mar 31 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 110.39429 * 2 1 4 4 C 1.54859 * 110.46862 * 237.46984 * 2 1 3 5 5 C 1.54496 * 102.01169 * 268.13543 * 4 2 1 6 6 C 1.52999 * 110.36427 * 225.71399 * 5 4 2 7 7 N 1.46895 * 110.36824 * 103.50035 * 5 4 2 8 8 C 1.46910 * 110.99703 * 181.53724 * 7 5 4 9 9 C 1.50700 * 109.46812 * 180.02562 * 8 7 5 10 10 O 1.21286 * 120.00120 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00000 * 179.97438 * 9 8 7 12 12 C 1.46491 * 120.00091 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46957 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.51328 * 104.92207 * 344.60406 * 5 4 2 22 22 O 1.20824 * 125.08979 * 177.74192 * 21 5 4 23 23 O 1.34061 * 109.81207 * 357.74408 * 21 5 4 24 24 H 1.08992 * 109.47293 * 299.03432 * 1 2 3 25 25 H 1.09002 * 109.46853 * 59.03172 * 1 2 3 26 26 H 1.09002 * 109.47472 * 179.03045 * 1 2 3 27 27 H 1.08998 * 109.47522 * 180.96909 * 3 2 1 28 28 H 1.09002 * 109.47331 * 300.96191 * 3 2 1 29 29 H 1.08998 * 109.47515 * 60.96923 * 3 2 1 30 30 H 1.08993 * 110.92673 * 150.01592 * 4 2 1 31 31 H 1.08997 * 110.93611 * 26.25393 * 4 2 1 32 32 H 1.09005 * 109.47618 * 298.46222 * 6 5 4 33 33 H 1.08997 * 109.47476 * 58.46133 * 6 5 4 34 34 H 1.08998 * 109.47348 * 178.45865 * 6 5 4 35 35 H 1.00897 * 111.00017 * 305.48700 * 7 5 4 36 36 H 1.08998 * 109.47017 * 60.00119 * 8 7 5 37 37 H 1.09002 * 109.46670 * 299.99530 * 8 7 5 38 38 H 0.97003 * 119.99349 * 359.97438 * 11 9 8 39 39 H 1.09004 * 109.47166 * 60.00164 * 12 11 9 40 40 H 1.08994 * 109.47507 * 299.99870 * 12 11 9 41 41 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0715 -0.7802 -1.2232 5 6 2.2300 -2.2063 -0.6505 6 6 3.5823 -2.7957 -1.0563 7 7 1.1365 -3.0691 -1.1171 8 6 1.2536 -4.4197 -0.5512 9 6 0.1176 -5.2742 -1.0517 10 8 -0.7085 -4.8042 -1.8052 11 7 0.0196 -6.5607 -0.6619 12 6 -1.0850 -7.3912 -1.1480 13 6 -0.9642 -8.7771 -0.5686 14 1 -0.1466 -9.0153 0.0957 15 6 -1.9009 -9.7392 -0.8815 16 7 -2.8967 -9.4490 -1.6901 17 14 -1.7554 -11.4549 -0.1572 18 1 -0.5560 -11.5236 0.7156 19 1 -2.9683 -11.7583 0.6443 20 1 -1.6267 -12.4465 -1.2551 21 6 2.1602 -2.0331 0.8512 22 8 2.2066 -2.9323 1.6570 23 8 2.0392 -0.7327 1.1535 24 1 -0.3633 0.4987 0.8984 25 1 -0.3633 0.5288 -0.8812 26 1 -0.3634 -1.0275 -0.0174 27 1 3.1528 1.4167 -0.0174 28 1 1.6942 1.9589 -0.8812 29 1 1.7223 1.9485 0.8985 30 1 3.0337 -0.3815 -1.5443 31 1 1.3523 -0.7684 -2.0422 32 1 3.6370 -2.8655 -2.1427 33 1 4.3831 -2.1519 -0.6929 34 1 3.6903 -3.7898 -0.6225 35 1 0.2384 -2.6632 -0.9012 36 1 1.2138 -4.3626 0.5366 37 1 2.2020 -4.8610 -0.8575 38 1 0.6805 -6.9366 -0.0596 39 1 -1.0455 -7.4479 -2.2359 40 1 -2.0334 -6.9502 -0.8414 41 1 -3.5555 -10.1261 -1.9106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930879217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:13 Heat of formation + Delta-G solvation = -147.560170 kcal Electronic energy + Delta-G solvation = -22997.912440 eV Core-core repulsion = 19490.701968 eV Total energy + Delta-G solvation = -3507.210472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.70905 -40.53198 -39.05679 -37.44242 -36.13121 -34.49899 -34.36110 -32.49022 -29.76722 -28.63928 -28.13062 -26.93314 -24.93368 -24.29195 -22.48756 -21.47724 -20.42373 -19.17197 -18.20765 -17.98173 -17.62404 -17.34430 -17.06867 -16.46154 -16.28191 -15.91129 -15.41815 -15.19698 -14.83121 -14.49385 -14.34387 -14.12423 -13.90344 -13.76483 -13.39614 -13.32659 -13.14050 -13.01496 -12.93960 -12.81003 -12.75240 -12.69164 -12.46499 -12.24348 -12.09671 -11.56266 -11.48017 -11.41444 -10.83509 -10.82024 -9.88227 -9.59252 -8.31033 -6.47386 0.77459 1.41974 1.42988 1.56676 1.69070 2.07163 2.20250 2.41000 2.68557 3.03765 3.06335 3.19718 3.52832 3.64869 3.83507 3.86851 4.06018 4.26165 4.31746 4.58496 4.61103 4.67539 4.71935 4.74907 4.80089 4.89538 4.98148 5.07500 5.10757 5.15345 5.22098 5.27706 5.45695 5.51560 5.67771 5.71473 5.82649 5.93054 6.26427 6.63005 6.85401 7.21081 7.42276 8.81377 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034288 B = 0.003201 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.424269 B = 8745.476465 C = 8947.535697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 C -0.138 4.138 4 C -0.128 4.128 5 C 0.059 3.941 6 C -0.135 4.135 7 N -0.637 5.637 8 C 0.038 3.962 9 C 0.497 3.503 10 O -0.585 6.585 11 N -0.709 5.709 12 C 0.268 3.732 13 C -0.557 4.557 14 H 0.081 0.919 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.985 3.015 18 H -0.255 1.255 19 H -0.279 1.279 20 H -0.276 1.276 21 C 0.447 3.553 22 O -0.489 6.489 23 O -0.357 6.357 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.348 0.652 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.407 0.593 39 H -0.009 1.009 40 H -0.012 1.012 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.499 22.140 1.801 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 C -0.194 4.194 4 C -0.166 4.166 5 C -0.034 4.034 6 C -0.192 4.192 7 N -0.272 5.272 8 C -0.094 4.094 9 C 0.284 3.716 10 O -0.466 6.466 11 N -0.359 5.359 12 C 0.145 3.855 13 C -0.595 4.595 14 H 0.099 0.901 15 C -0.195 4.195 16 N -0.568 5.568 17 Si 0.808 3.192 18 H -0.179 1.179 19 H -0.204 1.204 20 H -0.202 1.202 21 C 0.286 3.714 22 O -0.374 6.374 23 O -0.274 6.274 24 H 0.091 0.909 25 H 0.130 0.870 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.146 0.854 38 H 0.242 0.758 39 H 0.009 0.991 40 H 0.006 0.994 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.130 21.930 1.182 26.115 hybrid contribution -0.686 -1.214 1.499 2.047 sum 13.444 20.717 2.681 24.842 Atomic orbital electron populations 1.22376 0.92704 1.02374 1.05355 1.23620 0.94770 0.94386 0.81490 1.21913 1.02618 0.90157 1.04755 1.23364 1.06305 0.89147 0.97737 1.22630 0.95969 0.96771 0.88013 1.21875 0.91660 1.01403 1.04307 1.60601 1.05681 1.00850 1.60078 1.22020 0.98169 0.89867 0.99298 1.21127 0.86947 0.82792 0.80727 1.90629 1.44457 1.73629 1.37905 1.46196 1.29818 1.10964 1.48899 1.18554 0.84328 0.89363 0.93252 1.21644 1.12227 0.95406 1.30216 0.90051 1.26056 0.94204 1.04190 0.95081 1.70139 1.14407 1.36335 1.35910 0.85110 0.78659 0.77250 0.78191 1.17869 1.20423 1.20193 1.24927 0.71285 0.81917 0.93243 1.90649 1.45970 1.41981 1.58820 1.87046 1.76477 1.20551 1.43324 0.90909 0.86986 0.94259 0.90442 0.87199 0.91377 0.85178 0.86177 0.88546 0.89476 0.92233 0.83156 0.90543 0.85443 0.75781 0.99079 0.99431 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 8.78 71.98 0.63 -1.78 16 2 C 0.09 1.27 1.24 -10.16 -0.01 1.26 16 3 C -0.14 -1.01 8.92 71.98 0.64 -0.36 16 4 C -0.13 -1.54 5.52 31.74 0.18 -1.36 16 5 C 0.06 1.17 0.89 3.49 0.00 1.17 16 6 C -0.14 -2.17 8.19 71.98 0.59 -1.58 16 7 N -0.64 -16.79 5.71 -474.32 -2.71 -19.50 16 8 C 0.04 1.16 5.43 85.56 0.46 1.63 16 9 C 0.50 20.77 7.87 87.66 0.69 21.46 16 10 O -0.59 -29.11 16.20 -3.05 -0.05 -29.16 16 11 N -0.71 -31.45 5.55 -466.80 -2.59 -34.04 16 12 C 0.27 15.07 5.43 85.64 0.46 15.53 16 13 C -0.56 -31.07 9.28 25.60 0.24 -30.83 16 14 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 15 C 0.00 0.25 5.46 84.66 0.46 0.71 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 17 Si 0.98 43.13 29.54 68.60 2.03 45.15 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 21 C 0.45 11.48 7.08 71.44 0.51 11.99 16 22 O -0.49 -16.13 15.62 21.64 0.34 -15.79 16 23 O -0.36 -8.06 10.48 -50.13 -0.53 -8.58 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.04 0.74 6.40 -2.39 -0.02 0.73 16 27 H 0.08 0.48 8.13 -2.39 -0.02 0.46 16 28 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.13 0.82 7.60 -2.39 -0.02 0.80 16 31 H 0.12 1.33 7.80 -2.39 -0.02 1.31 16 32 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.10 6.44 -2.39 -0.02 1.08 16 35 H 0.35 9.77 6.74 -89.70 -0.60 9.17 16 36 H 0.08 2.43 5.73 -2.39 -0.01 2.42 16 37 H 0.13 3.31 6.35 -2.39 -0.02 3.30 16 38 H 0.41 15.37 8.32 -92.71 -0.77 14.60 16 39 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 40 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -77.61 336.33 1.31 -76.30 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.32 Total: 24.12 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 4.85 Total: 17.82 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -5.01 Total: -109.86 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -0.24 Total: -53.54 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -77.61 1.31 -76.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930879217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.258 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds