Wall clock time and date at job start Tue Mar 31 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48493 * 109.47247 * 275.29824 * 3 2 1 5 5 H 1.48501 * 109.46917 * 155.29935 * 3 2 1 6 6 H 1.48501 * 109.46952 * 35.30146 * 3 2 1 7 7 C 1.38816 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00190 * 335.31623 * 7 2 1 9 9 N 1.36941 * 120.00147 * 155.31714 * 7 2 1 10 10 C 1.43470 * 118.93763 * 321.18362 * 9 7 2 11 11 C 1.53248 * 108.25791 * 273.77565 * 10 9 7 12 12 C 1.47133 * 111.81213 * 281.67876 * 11 10 9 13 13 N 1.48218 * 110.34709 * 58.23130 * 12 11 10 14 14 C 1.34775 * 119.97078 * 102.50515 * 13 12 11 15 15 O 1.21283 * 119.99631 * 175.80497 * 14 13 12 16 16 C 1.50697 * 120.00170 * 355.80249 * 14 13 12 17 17 F 1.39901 * 110.01926 * 56.06197 * 16 14 13 18 18 C 1.54272 * 110.02879 * 294.61982 * 16 14 13 19 19 C 1.54893 * 104.19290 * 217.10349 * 18 16 14 20 20 C 1.54889 * 102.74878 * 37.94535 * 19 18 16 21 21 C 1.53872 * 110.03187 * 177.45811 * 16 14 13 22 22 C 1.43619 * 120.05258 * 282.48487 * 13 12 11 23 23 C 1.48856 * 118.93954 * 141.44763 * 9 7 2 24 24 H 0.96997 * 120.00504 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.76258 * 33.24196 * 10 9 7 26 26 H 1.09000 * 109.76192 * 154.01599 * 10 9 7 27 27 H 1.09003 * 109.07076 * 161.04551 * 11 10 9 28 28 H 1.08996 * 108.90524 * 42.20347 * 11 10 9 29 29 H 1.09004 * 109.32707 * 297.95938 * 12 11 10 30 30 H 1.09006 * 109.32742 * 178.49776 * 12 11 10 31 31 H 1.08995 * 110.48976 * 335.78459 * 18 16 14 32 32 H 1.08999 * 110.48374 * 98.43230 * 18 16 14 33 33 H 1.08993 * 110.75989 * 279.63058 * 19 18 16 34 34 H 1.09000 * 110.75181 * 156.25962 * 19 18 16 35 35 H 1.08991 * 110.48792 * 203.37512 * 20 19 18 36 36 H 1.09001 * 110.48270 * 80.73169 * 20 19 18 37 37 H 1.08998 * 110.03187 * 238.56939 * 21 16 14 38 38 H 1.08999 * 110.03122 * 359.97438 * 21 16 14 39 39 H 1.09000 * 108.87719 * 329.88406 * 22 13 12 40 40 H 1.09008 * 108.79303 * 211.39117 * 22 13 12 41 41 H 1.09001 * 109.48014 * 260.60082 * 23 9 7 42 42 H 1.08998 * 109.48462 * 20.63287 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3857 2.1110 -1.3940 5 1 3.5992 1.4103 0.5851 6 1 1.5081 2.6177 0.8091 7 6 2.0102 -1.2022 -0.0005 8 1 1.5442 -2.0949 0.3896 9 7 3.2857 -1.2562 -0.4958 10 6 3.6091 -0.4916 -1.6659 11 6 3.2540 -1.3285 -2.8996 12 6 4.2723 -2.3538 -3.1763 13 7 4.4310 -3.2511 -2.0073 14 6 3.8732 -4.4779 -2.0196 15 8 4.0659 -5.2410 -1.0968 16 6 3.0099 -4.9016 -3.1800 17 9 3.7230 -4.7787 -4.3773 18 6 1.7337 -4.0365 -3.2325 19 6 0.6249 -5.0220 -3.6782 20 6 1.0058 -6.3249 -2.9323 21 6 2.5471 -6.3565 -2.9890 22 6 5.1792 -2.8145 -0.8618 23 6 4.2905 -2.1110 0.1937 24 1 -0.4851 0.8400 0.0004 25 1 3.0304 0.4321 -1.6741 26 1 4.6742 -0.2602 -1.6722 27 1 3.1690 -0.6701 -3.7642 28 1 2.2947 -1.8174 -2.7305 29 1 5.2244 -1.8681 -3.3901 30 1 3.9672 -2.9407 -4.0427 31 1 1.5082 -3.6288 -2.2472 32 1 1.8464 -3.2342 -3.9617 33 1 0.6527 -5.1725 -4.7573 34 1 -0.3563 -4.6683 -3.3615 35 1 0.5874 -7.1926 -3.4422 36 1 0.6628 -6.2868 -1.8984 37 1 2.8773 -6.9668 -3.8296 38 1 2.9472 -6.7564 -2.0573 39 1 5.9534 -2.1209 -1.1897 40 1 5.6544 -3.6809 -0.4016 41 1 4.9137 -1.4914 0.8386 42 1 3.7778 -2.8613 0.7956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981510519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:09 Heat of formation + Delta-G solvation = -68.404498 kcal Electronic energy + Delta-G solvation = -25073.341884 eV Core-core repulsion = 21581.936649 eV Total energy + Delta-G solvation = -3491.405235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.14433 -41.38727 -39.05764 -37.84861 -36.20800 -33.79400 -33.67193 -30.52013 -29.88936 -28.96758 -27.29545 -25.63445 -24.04007 -22.57776 -21.82111 -21.42594 -20.03088 -18.79381 -18.64691 -17.94611 -17.25885 -17.01968 -16.39538 -16.28773 -15.94691 -15.59969 -15.22146 -15.08934 -14.79062 -14.71802 -14.42461 -14.17447 -13.89816 -13.79704 -13.45200 -13.07512 -12.78059 -12.71711 -12.50360 -12.29824 -12.19587 -12.08578 -12.04526 -11.90961 -11.77664 -11.57874 -11.49399 -11.40805 -10.73082 -10.57059 -9.70731 -8.69570 -8.19964 -5.55640 1.30130 1.33531 1.42339 1.52981 1.93323 2.41942 3.01404 3.06975 3.22997 3.33810 3.38322 3.56847 3.97489 4.10773 4.15795 4.20810 4.26135 4.33369 4.36399 4.41850 4.49269 4.61317 4.65090 4.69370 4.78411 4.83638 4.94141 4.96299 5.00274 5.02092 5.09110 5.12350 5.12903 5.19769 5.35640 5.50434 5.68113 5.97572 6.14694 6.28797 6.97558 7.05799 7.67484 8.05067 9.00189 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020233 B = 0.007027 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.548869 B = 3983.929929 C = 4450.775623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.014 4.014 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.312 1.312 7 C -0.255 4.255 8 H 0.022 0.978 9 N -0.610 5.610 10 C 0.143 3.857 11 C -0.171 4.171 12 C 0.103 3.897 13 N -0.577 5.577 14 C 0.497 3.503 15 O -0.567 6.567 16 C 0.109 3.891 17 F -0.187 7.187 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.139 4.139 22 C 0.103 3.897 23 C 0.128 3.872 24 H 0.262 0.738 25 H 0.030 0.970 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.462 -7.267 -11.702 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.210 4.210 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.188 1.188 6 H -0.241 1.241 7 C -0.385 4.385 8 H 0.040 0.960 9 N -0.334 5.334 10 C 0.017 3.983 11 C -0.211 4.211 12 C -0.018 4.018 13 N -0.306 5.306 14 C 0.283 3.717 15 O -0.447 6.447 16 C 0.088 3.912 17 F -0.167 7.167 18 C -0.174 4.174 19 C -0.156 4.156 20 C -0.155 4.155 21 C -0.177 4.177 22 C -0.022 4.022 23 C 0.003 3.997 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.522 -7.553 -11.243 16.002 hybrid contribution -0.191 1.104 0.712 1.327 sum 8.331 -6.449 -10.531 14.896 Atomic orbital electron populations 1.70023 1.07731 1.27388 1.53540 1.26025 0.95534 1.00898 0.98592 0.85863 0.79187 0.80143 0.77518 1.19478 1.18800 1.24105 1.18456 0.89497 0.92568 1.37979 0.96000 1.43960 1.07517 1.53704 1.28216 1.20697 0.98451 0.93162 0.85949 1.21758 1.00379 0.99189 0.99802 1.21363 1.01020 0.92097 0.87294 1.47532 1.51148 1.14019 1.17923 1.21091 0.79781 0.82239 0.88557 1.90617 1.61204 1.53635 1.39232 1.21752 0.90906 0.99943 0.78599 1.92780 1.80125 1.96590 1.47211 1.23059 0.92961 0.98492 1.02881 1.22554 0.97675 0.93910 1.01476 1.22347 0.93297 0.99094 1.00809 1.22728 0.97932 0.92049 1.04995 1.21638 0.93782 0.99722 0.87036 1.22173 0.90963 0.92771 0.93841 0.92885 0.95166 0.91423 0.89393 0.92484 0.88159 0.87771 0.92331 0.88617 0.88654 0.90687 0.88000 0.92638 0.87884 0.90002 0.88112 0.90349 0.93302 0.95190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.88 13.97 21.65 0.30 -57.58 16 2 C -0.01 -0.77 5.24 84.86 0.44 -0.33 16 3 Si 0.94 45.04 25.27 68.60 1.73 46.77 16 4 H -0.27 -11.89 6.67 99.48 0.66 -11.23 16 5 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 7 C -0.25 -14.32 9.52 84.03 0.80 -13.52 16 8 H 0.02 1.44 8.06 -2.91 -0.02 1.41 16 9 N -0.61 -27.67 2.11 -699.15 -1.47 -29.14 16 10 C 0.14 5.52 4.54 87.02 0.40 5.92 16 11 C -0.17 -5.59 5.18 28.85 0.15 -5.44 16 12 C 0.10 2.79 4.95 84.22 0.42 3.21 16 13 N -0.58 -18.91 2.46 -831.19 -2.04 -20.95 16 14 C 0.50 17.83 6.64 87.66 0.58 18.41 16 15 O -0.57 -23.61 14.73 -3.04 -0.04 -23.66 16 16 C 0.11 3.26 1.08 -10.81 -0.01 3.25 16 17 F -0.19 -5.03 14.36 44.97 0.65 -4.39 16 18 C -0.14 -4.15 4.04 31.67 0.13 -4.02 16 19 C -0.12 -2.88 6.91 31.89 0.22 -2.66 16 20 C -0.12 -2.79 6.83 31.67 0.22 -2.57 16 21 C -0.14 -3.68 6.25 31.32 0.20 -3.48 16 22 C 0.10 3.29 5.29 87.55 0.46 3.75 16 23 C 0.13 5.07 6.85 86.56 0.59 5.66 16 24 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 25 H 0.03 1.31 3.33 -2.39 -0.01 1.30 16 26 H 0.07 2.18 7.58 -2.39 -0.02 2.16 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.06 2.25 4.95 -2.39 -0.01 2.24 16 29 H 0.10 2.13 8.06 -2.39 -0.02 2.11 16 30 H 0.10 2.62 4.20 -2.38 -0.01 2.61 16 31 H 0.06 2.34 7.26 -2.39 -0.02 2.32 16 32 H 0.10 2.71 6.22 -2.39 -0.01 2.70 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 2.22 8.02 -2.39 -0.02 2.20 16 38 H 0.08 2.52 6.40 -2.39 -0.02 2.50 16 39 H 0.10 2.54 7.73 -2.39 -0.02 2.52 16 40 H 0.08 2.51 7.31 -2.38 -0.02 2.50 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.03 1.35 7.97 -2.39 -0.02 1.33 16 Total: -1.00 -69.24 311.31 4.69 -64.54 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.98 Total: 16.22 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 4.59 Total: 8.17 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -3.21 Total: -107.67 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.04 Total: -23.66 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.65 Total: -4.39 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.73 Total: 46.77 kcal Total: -69.24 4.69 -64.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981510519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.860 kcal (2) G-P(sol) polarization free energy of solvation -69.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds