Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99862 * 2 1 4 4 H 1.48508 * 109.46906 * 240.00175 * 3 2 1 5 5 H 1.48500 * 109.47342 * 120.00529 * 3 2 1 6 6 H 1.48495 * 109.47416 * 0.02562 * 3 2 1 7 7 C 1.38813 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99902 * 206.20784 * 7 2 1 9 9 N 1.36936 * 119.99905 * 26.21276 * 7 2 1 10 10 C 1.43471 * 118.93938 * 212.19149 * 9 7 2 11 11 C 1.53232 * 108.26373 * 273.78303 * 10 9 7 12 12 C 1.47148 * 111.81499 * 281.67531 * 11 10 9 13 13 N 1.48216 * 110.33957 * 58.22679 * 12 11 10 14 14 C 1.34779 * 119.96776 * 102.46843 * 13 12 11 15 15 O 1.21279 * 120.00215 * 352.15110 * 14 13 12 16 16 C 1.50703 * 119.99715 * 172.15107 * 14 13 12 17 17 C 1.52991 * 112.85240 * 57.06240 * 16 14 13 18 18 F 1.39900 * 109.47263 * 173.09209 * 17 16 14 19 19 C 1.53785 * 113.61245 * 285.86528 * 16 14 13 20 20 C 1.53956 * 87.01929 * 220.05265 * 19 16 14 21 21 C 1.53777 * 87.11344 * 25.36242 * 20 19 16 22 22 C 1.43616 * 120.05928 * 282.48635 * 13 12 11 23 23 C 1.48856 * 118.94139 * 32.46570 * 9 7 2 24 24 H 0.97000 * 120.00283 * 184.95729 * 1 2 3 25 25 H 1.08997 * 109.75875 * 33.24794 * 10 9 7 26 26 H 1.08995 * 109.76128 * 154.01545 * 10 9 7 27 27 H 1.09002 * 109.07522 * 161.04165 * 11 10 9 28 28 H 1.08998 * 108.90894 * 42.19533 * 11 10 9 29 29 H 1.08996 * 109.32389 * 297.96555 * 12 11 10 30 30 H 1.08995 * 109.32886 * 178.49537 * 12 11 10 31 31 H 1.08998 * 109.47233 * 293.09563 * 17 16 14 32 32 H 1.09008 * 109.46820 * 53.09679 * 17 16 14 33 33 H 1.09004 * 113.61201 * 334.57263 * 19 16 14 34 34 H 1.08994 * 113.61205 * 105.47481 * 19 16 14 35 35 H 1.09004 * 113.53616 * 270.81442 * 20 19 16 36 36 H 1.08994 * 113.66723 * 139.93748 * 20 19 16 37 37 H 1.08994 * 113.62175 * 220.09135 * 21 20 19 38 38 H 1.09000 * 113.68975 * 89.19592 * 21 20 19 39 39 H 1.09000 * 108.87490 * 329.88875 * 22 13 12 40 40 H 1.08998 * 108.79852 * 211.39766 * 22 13 12 41 41 H 1.08997 * 109.47901 * 260.59915 * 23 9 7 42 42 H 1.09000 * 109.48134 * 20.62247 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 3.1040 1.6964 1.2124 6 1 1.2852 2.7464 0.0006 7 6 2.0102 -1.2022 -0.0005 8 1 3.0069 -1.2504 0.4125 9 7 1.4311 -2.3268 -0.5249 10 6 1.7545 -3.6037 0.0438 11 6 3.0266 -4.1232 -0.6345 12 6 2.7464 -4.6844 -1.9655 13 7 2.1135 -3.6626 -2.8327 14 6 2.8444 -3.0312 -3.7728 15 8 4.0457 -3.1923 -3.8165 16 6 2.1689 -2.1251 -4.7697 17 6 1.3739 -0.9992 -4.1057 18 9 0.9101 -0.1150 -5.0857 19 6 1.3805 -2.8801 -5.8529 20 6 1.9175 -1.8412 -6.8542 21 6 3.1012 -1.6415 -5.8931 22 6 0.7223 -3.3443 -2.6719 23 6 0.4911 -2.1858 -1.6704 24 1 -0.4850 -0.8369 0.0726 25 1 1.9308 -3.4965 1.1140 26 1 0.9349 -4.3016 -0.1273 27 1 3.4728 -4.8969 -0.0097 28 1 3.7331 -3.2996 -0.7381 29 1 2.0748 -5.5368 -1.8634 30 1 3.6795 -5.0162 -2.4209 31 1 0.5258 -1.4219 -3.5671 32 1 2.0170 -0.4630 -3.4077 33 1 1.7460 -3.8909 -6.0343 34 1 0.3000 -2.8378 -5.7158 35 1 1.2813 -0.9615 -6.9520 36 1 2.2030 -2.2673 -7.8159 37 1 3.4078 -0.6008 -5.7882 38 1 3.9387 -2.3123 -6.0845 39 1 0.1971 -4.2299 -2.3142 40 1 0.3129 -3.0596 -3.6411 41 1 -0.5352 -2.2208 -1.3049 42 1 0.6669 -1.2330 -2.1697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981986319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = -18.185482 kcal Electronic energy + Delta-G solvation = -25215.241689 eV Core-core repulsion = 21726.014114 eV Total energy + Delta-G solvation = -3489.227575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.47045 -40.57281 -38.03432 -36.79541 -34.49686 -33.20788 -31.03298 -28.83139 -27.95323 -25.82608 -25.48052 -23.79035 -23.63998 -22.31631 -19.89456 -19.62804 -18.41562 -17.43087 -16.97385 -16.42646 -15.80677 -15.69983 -15.27560 -14.66109 -14.43549 -13.99757 -13.77226 -13.53335 -13.42425 -13.07993 -12.75367 -12.51099 -12.36662 -12.18039 -12.07771 -11.79974 -11.41573 -11.21572 -11.05575 -10.75584 -10.73381 -10.42078 -10.36786 -10.31539 -10.06799 -10.06324 -9.79295 -9.42085 -9.28399 -8.37373 -8.21967 -6.90576 -6.12502 -3.36129 2.87573 3.35801 3.45699 3.49878 3.67021 4.38372 4.49009 4.54296 4.64366 4.75880 4.88282 5.01639 5.20624 5.34244 5.39324 5.45666 5.52550 5.57888 5.60507 5.67187 5.79632 5.80964 5.84826 5.88473 5.91828 5.93856 6.08551 6.14213 6.30519 6.33302 6.39760 6.47209 6.54986 6.73414 6.76505 6.88002 7.11914 7.79927 8.06114 8.50660 8.52766 9.09381 9.76645 10.18463 11.11895 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.008844 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.537250 B = 3165.306112 C = 4159.659423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.015 4.015 3 Si 1.052 2.948 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.357 4.357 8 H 0.051 0.949 9 N -0.589 5.589 10 C 0.164 3.836 11 C -0.169 4.169 12 C 0.131 3.869 13 N -0.583 5.583 14 C 0.540 3.460 15 O -0.544 6.544 16 C -0.139 4.139 17 C 0.063 3.937 18 F -0.212 7.212 19 C -0.119 4.119 20 C -0.143 4.143 21 C -0.109 4.109 22 C 0.077 3.923 23 C 0.114 3.886 24 H 0.268 0.732 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 -7.615 -9.680 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.219 4.219 3 Si 0.881 3.119 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.486 4.486 8 H 0.069 0.931 9 N -0.312 5.312 10 C 0.036 3.964 11 C -0.210 4.210 12 C 0.009 3.991 13 N -0.314 5.314 14 C 0.327 3.673 15 O -0.422 6.422 16 C -0.143 4.143 17 C 0.009 3.991 18 F -0.193 7.193 19 C -0.157 4.157 20 C -0.180 4.180 21 C -0.147 4.147 22 C -0.048 4.048 23 C -0.011 4.011 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.566 -6.043 -9.754 11.488 hybrid contribution 0.237 -1.643 0.309 1.688 sum 0.803 -7.686 -9.444 12.203 Atomic orbital electron populations 1.70832 1.06585 1.30119 1.47074 1.25802 0.96400 1.01408 0.98276 0.83713 0.75131 0.76478 0.76553 1.21906 1.21802 1.20914 1.19853 0.98406 0.89128 1.41225 0.93113 1.43578 1.52868 1.02475 1.32290 1.20203 0.92883 0.87443 0.95877 1.21738 1.02428 1.00912 0.95901 1.20572 0.98045 0.89202 0.91260 1.47313 1.10499 1.39746 1.33801 1.19935 0.86754 0.79823 0.80750 1.90626 1.14140 1.63697 1.73728 1.22735 0.99539 0.97178 0.94846 1.22851 1.00137 0.88287 0.87838 1.92687 1.90381 1.70891 1.65350 1.22927 0.99699 0.98505 0.94545 1.23041 0.98162 0.99783 0.97044 1.22763 0.96712 1.02219 0.92957 1.22188 0.81807 1.00425 1.00409 1.22709 0.93934 0.96476 0.88018 0.92088 0.93372 0.95168 0.92563 0.91121 0.92067 0.90584 0.86984 0.89191 0.89748 0.90561 0.88500 0.91446 0.90798 0.88934 0.91392 0.90753 0.94507 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.66 12.86 55.49 0.71 -24.95 16 2 C -0.02 -0.42 4.62 -17.43 -0.08 -0.50 16 3 Si 1.05 24.96 29.99 -169.99 -5.10 19.86 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.36 -9.52 9.04 -15.06 -0.14 -9.65 16 8 H 0.05 1.42 7.95 -52.49 -0.42 1.01 16 9 N -0.59 -13.59 2.32 -172.35 -0.40 -13.99 16 10 C 0.16 3.25 5.59 -5.53 -0.03 3.22 16 11 C -0.17 -3.03 5.63 -29.42 -0.17 -3.19 16 12 C 0.13 2.12 5.65 -5.91 -0.03 2.09 16 13 N -0.58 -10.06 2.46 -176.65 -0.43 -10.49 16 14 C 0.54 9.98 6.77 -10.98 -0.07 9.90 16 15 O -0.54 -11.63 15.49 5.56 0.09 -11.54 16 16 C -0.14 -2.21 0.70 -154.85 -0.11 -2.32 16 17 C 0.06 1.09 5.05 37.15 0.19 1.28 16 18 F -0.21 -3.57 14.58 2.25 0.03 -3.54 16 19 C -0.12 -1.51 6.33 -25.82 -0.16 -1.67 16 20 C -0.14 -1.75 7.56 -25.83 -0.20 -1.95 16 21 C -0.11 -1.61 6.71 -25.92 -0.17 -1.78 16 22 C 0.08 1.25 4.71 -4.58 -0.02 1.23 16 23 C 0.11 2.34 4.37 -1.75 -0.01 2.34 16 24 H 0.27 7.58 6.59 -40.82 -0.27 7.31 16 25 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 26 H 0.03 0.54 7.58 -51.93 -0.39 0.15 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.54 7.90 -51.93 -0.41 1.13 16 29 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 30 H 0.08 1.26 7.23 -51.93 -0.38 0.89 16 31 H 0.11 1.92 3.07 -51.93 -0.16 1.76 16 32 H 0.09 1.81 7.83 -51.92 -0.41 1.41 16 33 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 34 H 0.08 0.88 7.49 -51.93 -0.39 0.49 16 35 H 0.10 1.22 6.40 -51.93 -0.33 0.89 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.09 1.40 7.55 -51.93 -0.39 1.00 16 39 H 0.07 0.98 7.73 -51.93 -0.40 0.58 16 40 H 0.07 1.05 4.16 -51.93 -0.22 0.84 16 41 H 0.04 0.79 7.16 -51.93 -0.37 0.42 16 42 H 0.08 1.82 3.69 -51.93 -0.19 1.63 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -30.12 312.65 -7.43 -37.55 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.04 Total: 3.40 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.00 Total: -1.01 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.12 Total: -49.43 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.03 Total: -3.54 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.10 Total: 19.86 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.12 -7.43 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981986319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.369 kcal (2) G-P(sol) polarization free energy of solvation -30.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds