Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 119.99862 * 2 1 4 4 H 1.48508 * 109.46906 * 240.00175 * 3 2 1 5 5 H 1.48500 * 109.47342 * 120.00529 * 3 2 1 6 6 H 1.48495 * 109.47416 * 0.02562 * 3 2 1 7 7 C 1.38813 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99902 * 206.20784 * 7 2 1 9 9 N 1.36936 * 119.99905 * 26.21276 * 7 2 1 10 10 C 1.43471 * 118.93938 * 212.19149 * 9 7 2 11 11 C 1.53232 * 108.26373 * 273.78303 * 10 9 7 12 12 C 1.47148 * 111.81499 * 281.67531 * 11 10 9 13 13 N 1.48216 * 110.33957 * 58.22679 * 12 11 10 14 14 C 1.34779 * 119.96776 * 102.46843 * 13 12 11 15 15 O 1.21279 * 120.00215 * 352.15110 * 14 13 12 16 16 C 1.50703 * 119.99715 * 172.15107 * 14 13 12 17 17 C 1.52991 * 112.85240 * 57.06240 * 16 14 13 18 18 F 1.39900 * 109.47263 * 173.09209 * 17 16 14 19 19 C 1.53785 * 113.61245 * 285.86528 * 16 14 13 20 20 C 1.53956 * 87.01929 * 220.05265 * 19 16 14 21 21 C 1.53777 * 87.11344 * 25.36242 * 20 19 16 22 22 C 1.43616 * 120.05928 * 282.48635 * 13 12 11 23 23 C 1.48856 * 118.94139 * 32.46570 * 9 7 2 24 24 H 0.97000 * 120.00283 * 184.95729 * 1 2 3 25 25 H 1.08997 * 109.75875 * 33.24794 * 10 9 7 26 26 H 1.08995 * 109.76128 * 154.01545 * 10 9 7 27 27 H 1.09002 * 109.07522 * 161.04165 * 11 10 9 28 28 H 1.08998 * 108.90894 * 42.19533 * 11 10 9 29 29 H 1.08996 * 109.32389 * 297.96555 * 12 11 10 30 30 H 1.08995 * 109.32886 * 178.49537 * 12 11 10 31 31 H 1.08998 * 109.47233 * 293.09563 * 17 16 14 32 32 H 1.09008 * 109.46820 * 53.09679 * 17 16 14 33 33 H 1.09004 * 113.61201 * 334.57263 * 19 16 14 34 34 H 1.08994 * 113.61205 * 105.47481 * 19 16 14 35 35 H 1.09004 * 113.53616 * 270.81442 * 20 19 16 36 36 H 1.08994 * 113.66723 * 139.93748 * 20 19 16 37 37 H 1.08994 * 113.62175 * 220.09135 * 21 20 19 38 38 H 1.09000 * 113.68975 * 89.19592 * 21 20 19 39 39 H 1.09000 * 108.87490 * 329.88875 * 22 13 12 40 40 H 1.08998 * 108.79852 * 211.39766 * 22 13 12 41 41 H 1.08997 * 109.47901 * 260.59915 * 23 9 7 42 42 H 1.09000 * 109.48134 * 20.62247 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 3.1040 1.6964 1.2124 6 1 1.2852 2.7464 0.0006 7 6 2.0102 -1.2022 -0.0005 8 1 3.0069 -1.2504 0.4125 9 7 1.4311 -2.3268 -0.5249 10 6 1.7545 -3.6037 0.0438 11 6 3.0266 -4.1232 -0.6345 12 6 2.7464 -4.6844 -1.9655 13 7 2.1135 -3.6626 -2.8327 14 6 2.8444 -3.0312 -3.7728 15 8 4.0457 -3.1923 -3.8165 16 6 2.1689 -2.1251 -4.7697 17 6 1.3739 -0.9992 -4.1057 18 9 0.9101 -0.1150 -5.0857 19 6 1.3805 -2.8801 -5.8529 20 6 1.9175 -1.8412 -6.8542 21 6 3.1012 -1.6415 -5.8931 22 6 0.7223 -3.3443 -2.6719 23 6 0.4911 -2.1858 -1.6704 24 1 -0.4850 -0.8369 0.0726 25 1 1.9308 -3.4965 1.1140 26 1 0.9349 -4.3016 -0.1273 27 1 3.4728 -4.8969 -0.0097 28 1 3.7331 -3.2996 -0.7381 29 1 2.0748 -5.5368 -1.8634 30 1 3.6795 -5.0162 -2.4209 31 1 0.5258 -1.4219 -3.5671 32 1 2.0170 -0.4630 -3.4077 33 1 1.7460 -3.8909 -6.0343 34 1 0.3000 -2.8378 -5.7158 35 1 1.2813 -0.9615 -6.9520 36 1 2.2030 -2.2673 -7.8159 37 1 3.4078 -0.6008 -5.7882 38 1 3.9387 -2.3123 -6.0845 39 1 0.1971 -4.2299 -2.3142 40 1 0.3129 -3.0596 -3.6411 41 1 -0.5352 -2.2208 -1.3049 42 1 0.6669 -1.2330 -2.1697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981986319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = -35.329358 kcal Electronic energy + Delta-G solvation = -25215.985103 eV Core-core repulsion = 21726.014114 eV Total energy + Delta-G solvation = -3489.970989 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.85550 -41.93034 -39.40025 -38.27806 -36.19221 -34.71514 -32.88160 -30.15278 -29.54698 -27.28012 -26.75763 -25.52410 -25.02362 -23.71935 -21.58862 -20.84847 -19.86241 -19.11387 -18.44363 -17.87321 -17.21621 -17.07641 -16.66385 -16.28271 -15.84430 -15.61240 -15.52613 -15.10309 -14.79470 -14.54010 -14.25052 -14.06055 -13.66857 -13.48603 -13.38944 -13.07125 -12.99355 -12.84066 -12.58566 -12.27581 -12.12821 -12.05188 -11.96747 -11.81718 -11.74775 -11.33312 -11.27892 -11.06176 -10.69356 -10.40888 -9.66854 -8.85593 -8.20061 -5.44220 1.44924 1.51135 1.55202 1.74953 2.03765 2.58376 3.11093 3.16537 3.29390 3.37848 3.55403 3.56260 3.79010 3.88925 4.04937 4.07966 4.13780 4.17841 4.32902 4.41316 4.44492 4.52846 4.60908 4.68055 4.70426 4.77108 4.80556 4.93380 4.94689 4.96320 5.03494 5.11543 5.15692 5.17864 5.39994 5.43844 5.66638 5.90860 6.38658 6.45642 7.09882 7.15165 7.80230 8.19607 8.98605 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.014925 B = 0.008844 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.537250 B = 3165.306112 C = 4159.659423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.054 4.054 3 Si 1.087 2.913 4 H -0.290 1.290 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.356 4.356 8 H 0.027 0.973 9 N -0.604 5.604 10 C 0.160 3.840 11 C -0.154 4.154 12 C 0.127 3.873 13 N -0.583 5.583 14 C 0.533 3.467 15 O -0.581 6.581 16 C -0.147 4.147 17 C 0.074 3.926 18 F -0.209 7.209 19 C -0.106 4.106 20 C -0.129 4.129 21 C -0.116 4.116 22 C 0.086 3.914 23 C 0.115 3.885 24 H 0.260 0.740 25 H 0.030 0.970 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.022 0.978 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.029 0.971 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 -9.418 -11.206 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.253 4.253 3 Si 0.913 3.087 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.487 4.487 8 H 0.045 0.955 9 N -0.327 5.327 10 C 0.033 3.967 11 C -0.194 4.194 12 C 0.006 3.994 13 N -0.313 5.313 14 C 0.321 3.679 15 O -0.461 6.461 16 C -0.151 4.151 17 C 0.019 3.981 18 F -0.190 7.190 19 C -0.143 4.143 20 C -0.166 4.166 21 C -0.154 4.154 22 C -0.039 4.039 23 C -0.010 4.010 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.041 0.959 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.047 0.953 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.403 -7.877 -11.274 13.759 hybrid contribution 0.590 -1.105 0.849 1.513 sum 0.187 -8.981 -10.425 13.762 Atomic orbital electron populations 1.70917 1.06985 1.29586 1.49290 1.26648 0.96570 1.03610 0.98493 0.83213 0.74445 0.74059 0.76937 1.21694 1.20666 1.20980 1.19877 0.97351 0.90804 1.40632 0.95537 1.43769 1.52960 1.02537 1.33482 1.20333 0.94621 0.86804 0.94955 1.21549 1.00242 1.00024 0.97631 1.20709 0.99109 0.89927 0.89651 1.47456 1.10912 1.39513 1.33380 1.20431 0.86467 0.79750 0.81222 1.90603 1.15717 1.65020 1.74782 1.22790 1.00501 0.96869 0.94905 1.22604 0.99660 0.88332 0.87463 1.92694 1.90258 1.70952 1.65051 1.22963 1.00343 0.98804 0.92201 1.22972 0.96307 0.99693 0.97637 1.22816 0.97520 1.01304 0.93759 1.22115 0.81569 0.99803 1.00411 1.22696 0.92680 0.97643 0.88030 0.92982 0.95196 0.92156 0.89692 0.95897 0.87934 0.90946 0.86619 0.93175 0.88417 0.88710 0.88703 0.88944 0.92063 0.89395 0.88263 0.88229 0.95341 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.29 12.86 21.65 0.28 -53.01 16 2 C -0.05 -2.98 4.62 84.86 0.39 -2.58 16 3 Si 1.09 51.63 29.99 68.60 2.06 53.68 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.36 -19.53 9.04 84.03 0.76 -18.77 16 8 H 0.03 1.56 7.95 -2.91 -0.02 1.54 16 9 N -0.60 -27.95 2.32 -699.19 -1.62 -29.57 16 10 C 0.16 6.17 5.59 87.02 0.49 6.66 16 11 C -0.15 -5.34 5.63 28.85 0.16 -5.17 16 12 C 0.13 3.80 5.65 84.23 0.48 4.27 16 13 N -0.58 -18.94 2.46 -831.20 -2.04 -20.99 16 14 C 0.53 19.20 6.77 87.66 0.59 19.79 16 15 O -0.58 -24.88 15.49 -3.03 -0.05 -24.93 16 16 C -0.15 -4.47 0.70 -52.40 -0.04 -4.51 16 17 C 0.07 2.53 5.05 71.98 0.36 2.90 16 18 F -0.21 -6.86 14.58 44.97 0.66 -6.20 16 19 C -0.11 -2.31 6.33 31.18 0.20 -2.11 16 20 C -0.13 -2.79 7.56 31.18 0.24 -2.55 16 21 C -0.12 -3.32 6.71 31.12 0.21 -3.11 16 22 C 0.09 2.53 4.71 87.55 0.41 2.94 16 23 C 0.11 4.63 4.37 86.56 0.38 5.01 16 24 H 0.26 14.93 6.59 -92.71 -0.61 14.32 16 25 H 0.03 1.24 8.02 -2.39 -0.02 1.23 16 26 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.02 1.00 7.90 -2.39 -0.02 0.98 16 29 H 0.10 2.29 8.05 -2.39 -0.02 2.27 16 30 H 0.07 2.26 7.23 -2.39 -0.02 2.25 16 31 H 0.12 3.87 3.07 -2.39 -0.01 3.86 16 32 H 0.05 2.11 7.83 -2.38 -0.02 2.09 16 33 H 0.10 1.94 8.09 -2.38 -0.02 1.92 16 34 H 0.09 1.76 7.49 -2.39 -0.02 1.74 16 35 H 0.09 2.13 6.40 -2.38 -0.02 2.11 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 38 H 0.09 2.60 7.55 -2.39 -0.02 2.58 16 39 H 0.10 2.38 7.73 -2.39 -0.02 2.36 16 40 H 0.10 2.47 4.16 -2.39 -0.01 2.46 16 41 H 0.03 1.20 7.16 -2.39 -0.02 1.19 16 42 H 0.06 2.72 3.69 -2.39 -0.01 2.71 16 Total: -1.00 -67.58 312.65 5.10 -62.49 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.18 Total: 15.77 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 4.63 Total: 2.76 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -3.38 Total: -103.56 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.66 Total: -6.20 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.06 Total: 53.68 kcal Total: -67.58 5.10 -62.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981986319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.156 kcal (2) G-P(sol) polarization free energy of solvation -67.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds