Wall clock time and date at job start Tue Mar 31 2020 06:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00533 * 2 1 4 4 H 1.48503 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46933 * 300.00208 * 3 2 1 6 6 H 1.48499 * 109.47239 * 60.00072 * 3 2 1 7 7 C 1.38815 * 119.99373 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99767 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00237 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99910 * 180.02562 * 9 7 2 11 11 C 1.53046 * 109.46170 * 275.06966 * 10 9 7 12 12 C 1.53187 * 109.31363 * 178.61573 * 11 10 9 13 13 N 1.46928 * 108.77625 * 54.63376 * 12 11 10 14 14 C 1.34780 * 120.63038 * 126.37031 * 13 12 11 15 15 O 1.21275 * 120.00065 * 180.02562 * 14 13 12 16 16 C 1.50704 * 119.99769 * 0.02562 * 14 13 12 17 17 F 1.39904 * 110.01340 * 54.30508 * 16 14 13 18 18 C 1.54258 * 110.03553 * 292.90986 * 16 14 13 19 19 C 1.54969 * 104.16238 * 217.13670 * 18 16 14 20 20 C 1.54890 * 102.77243 * 37.89016 * 19 18 16 21 21 C 1.53878 * 110.02938 * 175.69222 * 16 14 13 22 22 C 1.46921 * 118.73936 * 306.39044 * 13 12 11 23 23 C 1.53046 * 109.46061 * 155.00291 * 10 9 7 24 24 H 0.97001 * 119.99159 * 359.97438 * 1 2 3 25 25 H 0.96997 * 120.00092 * 0.02562 * 9 7 2 26 26 H 1.09000 * 109.45276 * 35.03507 * 10 9 7 27 27 H 1.09001 * 109.49519 * 298.56718 * 11 10 9 28 28 H 1.08996 * 109.49601 * 58.66376 * 11 10 9 29 29 H 1.09000 * 109.59097 * 294.84726 * 12 11 10 30 30 H 1.08999 * 109.58764 * 174.41759 * 12 11 10 31 31 H 1.09000 * 110.48952 * 335.78526 * 18 16 14 32 32 H 1.09001 * 110.48811 * 98.42758 * 18 16 14 33 33 H 1.08996 * 110.71904 * 279.57948 * 19 18 16 34 34 H 1.08994 * 110.76317 * 156.21849 * 19 18 16 35 35 H 1.09009 * 110.48150 * 203.40943 * 20 19 18 36 36 H 1.08993 * 110.48789 * 80.76546 * 20 19 18 37 37 H 1.08998 * 110.03021 * 238.57253 * 21 16 14 38 38 H 1.09004 * 110.03333 * 359.95283 * 21 16 14 39 39 H 1.08996 * 109.58905 * 293.82203 * 22 13 12 40 40 H 1.09008 * 109.58585 * 173.39403 * 22 13 12 41 41 H 1.09002 * 109.49423 * 301.33731 * 23 10 9 42 42 H 1.08995 * 109.49499 * 61.43112 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 2.4232 -4.0347 -1.4379 12 6 3.2187 -5.3438 -1.4310 13 7 2.4410 -6.3660 -0.7175 14 6 2.1723 -7.5529 -1.2967 15 8 1.5289 -8.3883 -0.6974 16 6 2.6712 -7.8420 -2.6890 17 9 4.0543 -7.6414 -2.7533 18 6 1.9569 -6.9289 -3.7066 19 6 1.7554 -7.8316 -4.9500 20 6 1.4191 -9.2076 -4.3234 21 6 2.3299 -9.2903 -3.0811 22 6 1.9616 -6.0695 0.6393 23 6 1.1801 -4.7523 0.6092 24 1 -0.4849 0.8401 0.0004 25 1 0.3554 -2.3881 -0.0005 26 1 2.9681 -3.5505 0.5895 27 1 1.5124 -4.1655 -2.0224 28 1 3.0288 -3.2433 -1.8793 29 1 4.1714 -5.1899 -0.9244 30 1 3.3959 -5.6691 -2.4561 31 1 0.9946 -6.6000 -3.3143 32 1 2.5822 -6.0712 -3.9543 33 1 2.6716 -7.8884 -5.5378 34 1 0.9262 -7.4714 -5.5588 35 1 1.6521 -10.0118 -5.0214 36 1 0.3700 -9.2473 -4.0306 37 1 3.2418 -9.8366 -3.3223 38 1 1.8042 -9.7844 -2.2640 39 1 2.8117 -5.9747 1.3147 40 1 1.3093 -6.8737 0.9802 41 1 0.9010 -4.4716 1.6248 42 1 0.2811 -4.8763 0.0055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996753790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:59 Heat of formation + Delta-G solvation = -80.177667 kcal Electronic energy + Delta-G solvation = -23652.477550 eV Core-core repulsion = 20160.561792 eV Total energy + Delta-G solvation = -3491.915758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.09384 -40.20207 -37.84687 -36.83370 -34.56907 -32.15220 -31.05867 -29.49967 -29.08834 -28.58831 -25.05916 -23.07515 -23.05755 -21.44677 -21.23325 -20.04570 -18.95818 -17.83212 -17.09186 -16.60880 -15.93272 -15.60131 -14.92598 -14.78842 -14.66452 -14.25846 -13.79499 -13.75693 -13.55327 -13.49715 -13.39151 -13.04552 -12.39525 -12.11870 -12.00845 -11.74253 -11.67268 -11.40407 -11.28407 -11.06675 -10.97208 -10.88587 -10.82952 -10.80863 -10.48272 -10.23274 -9.86474 -9.72726 -9.65118 -8.94839 -8.58991 -7.01674 -5.81269 -3.10608 2.39927 2.87685 3.39988 3.45849 3.48015 3.94836 4.07425 4.23966 4.40916 4.54498 4.86543 4.99723 5.05142 5.13869 5.19261 5.26906 5.29101 5.33031 5.38869 5.49430 5.55960 5.63123 5.66304 5.66945 5.77897 5.85396 5.90752 5.92658 6.01561 6.05375 6.19148 6.31863 6.33996 6.45938 6.54987 6.84222 6.98844 7.36595 7.65876 7.99838 8.36963 9.48428 10.05377 10.40177 11.41340 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027242 B = 0.003992 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.568216 B = 7012.638815 C = 7351.456908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.178 3.822 11 C -0.151 4.151 12 C 0.096 3.904 13 N -0.592 5.592 14 C 0.503 3.497 15 O -0.535 6.535 16 C 0.103 3.897 17 F -0.192 7.192 18 C -0.143 4.143 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.142 4.142 22 C 0.114 3.886 23 C -0.138 4.138 24 H 0.255 0.745 25 H 0.384 0.616 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 -17.335 -7.645 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.192 4.192 12 C -0.027 4.027 13 N -0.324 5.324 14 C 0.288 3.712 15 O -0.412 6.412 16 C 0.081 3.919 17 F -0.172 7.172 18 C -0.181 4.181 19 C -0.161 4.161 20 C -0.159 4.159 21 C -0.180 4.180 22 C -0.009 4.009 23 C -0.177 4.177 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.873 -17.590 -7.283 19.652 hybrid contribution 0.322 1.192 -0.025 1.235 sum 5.195 -16.399 -7.308 18.690 Atomic orbital electron populations 1.69676 1.05141 1.25587 1.57616 1.24748 0.95494 0.97712 1.02911 0.86139 0.78803 0.84162 0.77209 1.20527 1.21873 1.21859 1.19284 0.91017 0.84067 1.42770 0.91089 1.42436 1.05802 0.99692 1.88498 1.20173 0.94483 0.86094 0.92456 1.22691 1.00002 0.94683 1.01804 1.22181 0.94557 0.88578 0.97343 1.48146 1.52804 1.14552 1.16883 1.20664 0.80729 0.82139 0.87623 1.90657 1.40694 1.46011 1.63859 1.21781 0.76961 0.98952 0.94178 1.92889 1.30951 1.96122 1.97264 1.23121 1.01988 0.98136 0.94868 1.22549 1.02251 0.94675 0.96642 1.22352 0.99908 0.97557 0.96121 1.22738 1.01814 0.93212 1.00211 1.21701 0.98915 0.98242 0.82013 1.22207 0.99153 0.93994 1.02371 0.93532 0.78263 0.93344 0.92170 0.90469 0.91180 0.89563 0.89239 0.88882 0.90784 0.90466 0.90833 0.90916 0.89917 0.87963 0.91270 0.89266 0.90384 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.51 5.12 -53.38 -0.27 -17.78 16 10 C 0.18 3.35 2.73 -67.88 -0.19 3.17 16 11 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 12 C 0.10 1.31 5.59 -3.71 -0.02 1.29 16 13 N -0.59 -8.53 2.97 -172.77 -0.51 -9.04 16 14 C 0.50 7.40 6.68 -10.98 -0.07 7.33 16 15 O -0.53 -9.08 14.63 5.56 0.08 -9.00 16 16 C 0.10 1.24 1.08 -90.65 -0.10 1.14 16 17 F -0.19 -2.44 14.99 2.25 0.03 -2.41 16 18 C -0.14 -1.51 5.18 -25.03 -0.13 -1.64 16 19 C -0.12 -1.04 6.91 -24.69 -0.17 -1.21 16 20 C -0.12 -1.03 6.83 -25.07 -0.17 -1.21 16 21 C -0.14 -1.50 6.25 -25.61 -0.16 -1.66 16 22 C 0.11 1.64 6.43 -3.71 -0.02 1.61 16 23 C -0.14 -2.25 5.55 -26.61 -0.15 -2.40 16 24 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 25 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 26 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.06 3.45 -51.93 -0.18 0.88 16 31 H 0.09 1.01 7.85 -51.93 -0.41 0.60 16 32 H 0.09 0.94 6.61 -51.93 -0.34 0.60 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 38 H 0.10 1.22 6.40 -51.93 -0.33 0.89 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.30 7.01 -51.92 -0.36 0.94 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -30.49 328.73 -8.15 -38.64 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.55 Total: 7.93 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.58 Total: -3.25 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.06 Total: -53.79 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.03 Total: -2.41 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.49 -8.15 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996753790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.542 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds