Wall clock time and date at job start Tue Mar 31 2020 06:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00533 * 2 1 4 4 H 1.48503 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46933 * 300.00208 * 3 2 1 6 6 H 1.48499 * 109.47239 * 60.00072 * 3 2 1 7 7 C 1.38815 * 119.99373 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99767 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00237 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99910 * 180.02562 * 9 7 2 11 11 C 1.53046 * 109.46170 * 275.06966 * 10 9 7 12 12 C 1.53187 * 109.31363 * 178.61573 * 11 10 9 13 13 N 1.46928 * 108.77625 * 54.63376 * 12 11 10 14 14 C 1.34780 * 120.63038 * 126.37031 * 13 12 11 15 15 O 1.21275 * 120.00065 * 180.02562 * 14 13 12 16 16 C 1.50704 * 119.99769 * 0.02562 * 14 13 12 17 17 F 1.39904 * 110.01340 * 54.30508 * 16 14 13 18 18 C 1.54258 * 110.03553 * 292.90986 * 16 14 13 19 19 C 1.54969 * 104.16238 * 217.13670 * 18 16 14 20 20 C 1.54890 * 102.77243 * 37.89016 * 19 18 16 21 21 C 1.53878 * 110.02938 * 175.69222 * 16 14 13 22 22 C 1.46921 * 118.73936 * 306.39044 * 13 12 11 23 23 C 1.53046 * 109.46061 * 155.00291 * 10 9 7 24 24 H 0.97001 * 119.99159 * 359.97438 * 1 2 3 25 25 H 0.96997 * 120.00092 * 0.02562 * 9 7 2 26 26 H 1.09000 * 109.45276 * 35.03507 * 10 9 7 27 27 H 1.09001 * 109.49519 * 298.56718 * 11 10 9 28 28 H 1.08996 * 109.49601 * 58.66376 * 11 10 9 29 29 H 1.09000 * 109.59097 * 294.84726 * 12 11 10 30 30 H 1.08999 * 109.58764 * 174.41759 * 12 11 10 31 31 H 1.09000 * 110.48952 * 335.78526 * 18 16 14 32 32 H 1.09001 * 110.48811 * 98.42758 * 18 16 14 33 33 H 1.08996 * 110.71904 * 279.57948 * 19 18 16 34 34 H 1.08994 * 110.76317 * 156.21849 * 19 18 16 35 35 H 1.09009 * 110.48150 * 203.40943 * 20 19 18 36 36 H 1.08993 * 110.48789 * 80.76546 * 20 19 18 37 37 H 1.08998 * 110.03021 * 238.57253 * 21 16 14 38 38 H 1.09004 * 110.03333 * 359.95283 * 21 16 14 39 39 H 1.08996 * 109.58905 * 293.82203 * 22 13 12 40 40 H 1.09008 * 109.58585 * 173.39403 * 22 13 12 41 41 H 1.09002 * 109.49423 * 301.33731 * 23 10 9 42 42 H 1.08995 * 109.49499 * 61.43112 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 2.4232 -4.0347 -1.4379 12 6 3.2187 -5.3438 -1.4310 13 7 2.4410 -6.3660 -0.7175 14 6 2.1723 -7.5529 -1.2967 15 8 1.5289 -8.3883 -0.6974 16 6 2.6712 -7.8420 -2.6890 17 9 4.0543 -7.6414 -2.7533 18 6 1.9569 -6.9289 -3.7066 19 6 1.7554 -7.8316 -4.9500 20 6 1.4191 -9.2076 -4.3234 21 6 2.3299 -9.2903 -3.0811 22 6 1.9616 -6.0695 0.6393 23 6 1.1801 -4.7523 0.6092 24 1 -0.4849 0.8401 0.0004 25 1 0.3554 -2.3881 -0.0005 26 1 2.9681 -3.5505 0.5895 27 1 1.5124 -4.1655 -2.0224 28 1 3.0288 -3.2433 -1.8793 29 1 4.1714 -5.1899 -0.9244 30 1 3.3959 -5.6691 -2.4561 31 1 0.9946 -6.6000 -3.3143 32 1 2.5822 -6.0712 -3.9543 33 1 2.6716 -7.8884 -5.5378 34 1 0.9262 -7.4714 -5.5588 35 1 1.6521 -10.0118 -5.0214 36 1 0.3700 -9.2473 -4.0306 37 1 3.2418 -9.8366 -3.3223 38 1 1.8042 -9.7844 -2.2640 39 1 2.8117 -5.9747 1.3147 40 1 1.3093 -6.8737 0.9802 41 1 0.9010 -4.4716 1.6248 42 1 0.2811 -4.8763 0.0055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996753790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:59 Heat of formation + Delta-G solvation = -98.132031 kcal Electronic energy + Delta-G solvation = -23653.256110 eV Core-core repulsion = 20160.561792 eV Total energy + Delta-G solvation = -3492.694317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.07301 -41.37572 -39.08758 -37.79273 -36.22985 -33.90095 -32.34970 -31.13286 -29.88080 -29.62881 -26.66757 -24.67918 -24.33690 -22.65339 -22.00993 -21.28295 -20.12693 -19.15132 -18.84575 -17.65008 -17.02270 -16.71144 -16.53195 -15.92113 -15.77315 -15.44044 -15.37679 -15.19934 -14.88976 -14.68978 -14.39501 -14.20754 -13.81854 -13.37100 -13.21972 -13.05254 -12.87376 -12.67857 -12.55456 -12.29581 -12.17866 -12.11650 -12.09290 -11.92115 -11.86125 -11.67679 -11.50355 -11.34305 -10.95941 -10.75505 -9.82071 -9.01382 -7.93477 -5.22221 1.24929 1.48863 1.49253 1.59011 1.75229 2.56839 2.97432 3.20370 3.33676 3.40318 3.55287 3.76812 3.83238 4.00518 4.09586 4.15439 4.25386 4.31169 4.34643 4.37061 4.41425 4.57524 4.60972 4.70338 4.76471 4.81043 4.84496 4.95145 4.96951 5.03114 5.07532 5.15371 5.16810 5.27111 5.37124 5.44350 5.53228 5.56700 6.19512 6.28502 6.83557 7.34763 8.09624 8.32933 9.30330 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027242 B = 0.003992 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.568216 B = 7012.638815 C = 7351.456908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.297 1.297 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.737 5.737 10 C 0.172 3.828 11 C -0.138 4.138 12 C 0.106 3.894 13 N -0.595 5.595 14 C 0.498 3.502 15 O -0.561 6.561 16 C 0.103 3.897 17 F -0.194 7.194 18 C -0.145 4.145 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.142 4.142 22 C 0.119 3.881 23 C -0.126 4.126 24 H 0.249 0.751 25 H 0.371 0.629 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.668 -18.256 -8.803 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.367 4.367 8 H 0.097 0.903 9 N -0.376 5.376 10 C 0.064 3.936 11 C -0.179 4.179 12 C -0.017 4.017 13 N -0.326 5.326 14 C 0.284 3.716 15 O -0.440 6.440 16 C 0.081 3.919 17 F -0.174 7.174 18 C -0.183 4.183 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.180 4.180 22 C -0.003 4.003 23 C -0.165 4.165 24 H 0.058 0.942 25 H 0.202 0.798 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.544 -18.549 -8.450 21.408 hybrid contribution -0.168 1.396 0.372 1.455 sum 6.376 -17.153 -8.078 20.003 Atomic orbital electron populations 1.69830 1.06675 1.25850 1.59868 1.25522 0.96271 1.00989 1.03993 0.85126 0.78412 0.80092 0.76467 1.18815 1.22267 1.22406 1.19666 0.91495 0.85051 1.40470 0.90329 1.42645 1.05399 1.00960 1.88633 1.20413 0.94326 0.84769 0.94085 1.22452 0.99905 0.96027 0.99527 1.22141 0.94164 0.86766 0.98593 1.48230 1.52742 1.14788 1.16854 1.21200 0.80182 0.81714 0.88483 1.90644 1.41847 1.46789 1.64758 1.21880 0.76832 1.00429 0.92733 1.92884 1.31140 1.96221 1.97167 1.23148 1.01210 0.98493 0.95404 1.22569 1.03365 0.93831 0.95761 1.22366 0.99192 0.98466 0.95534 1.22759 1.02617 0.92034 1.00561 1.21633 0.99277 0.96790 0.82637 1.22051 0.98525 0.94215 1.01746 0.94169 0.79758 0.93330 0.93021 0.91334 0.89916 0.87805 0.90396 0.88407 0.89561 0.89260 0.88676 0.91330 0.88748 0.89711 0.89612 0.89385 0.90619 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.76 13.06 21.65 0.28 -58.48 16 2 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.24 -12.58 9.93 84.03 0.83 -11.74 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -35.88 5.12 -322.79 -1.65 -37.53 16 10 C 0.17 6.39 2.73 45.02 0.12 6.52 16 11 C -0.14 -4.42 5.66 30.67 0.17 -4.24 16 12 C 0.11 2.69 5.59 86.36 0.48 3.17 16 13 N -0.60 -16.33 2.97 -818.91 -2.43 -18.76 16 14 C 0.50 14.10 6.68 87.66 0.59 14.68 16 15 O -0.56 -18.81 14.63 -3.01 -0.04 -18.85 16 16 C 0.10 2.30 1.08 -10.82 -0.01 2.29 16 17 F -0.19 -4.46 14.99 44.97 0.67 -3.79 16 18 C -0.14 -2.77 5.18 31.69 0.16 -2.60 16 19 C -0.12 -1.66 6.91 31.91 0.22 -1.44 16 20 C -0.12 -1.72 6.83 31.67 0.22 -1.51 16 21 C -0.14 -2.74 6.25 31.32 0.20 -2.55 16 22 C 0.12 3.30 6.43 86.36 0.56 3.85 16 23 C -0.13 -4.07 5.55 30.67 0.17 -3.90 16 24 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.37 19.74 7.80 -92.71 -0.72 19.01 16 26 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.10 2.32 3.45 -2.39 -0.01 2.31 16 31 H 0.08 1.68 7.85 -2.39 -0.02 1.66 16 32 H 0.10 1.76 6.61 -2.39 -0.02 1.74 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.58 8.02 -2.39 -0.02 1.56 16 38 H 0.08 1.97 6.40 -2.39 -0.02 1.95 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.09 2.51 7.01 -2.38 -0.02 2.49 16 41 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -65.07 328.73 3.33 -61.74 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 0.30 Total: 29.68 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 4.18 Total: -1.25 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -3.80 Total: -114.77 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.04 Total: -18.85 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.67 Total: -3.79 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -65.07 3.33 -61.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996753790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.390 kcal (2) G-P(sol) polarization free energy of solvation -65.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds