Wall clock time and date at job start Tue Mar 31 2020 06:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48494 * 109.47329 * 270.00222 * 3 2 1 5 5 H 1.48498 * 109.47129 * 30.00380 * 3 2 1 6 6 H 1.48499 * 109.46558 * 150.00345 * 3 2 1 7 7 C 1.38809 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00339 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00091 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.46080 * 155.00120 * 10 9 7 12 12 C 1.53201 * 109.31031 * 181.38292 * 11 10 9 13 13 N 1.46924 * 108.77489 * 305.36468 * 12 11 10 14 14 C 1.34773 * 120.62734 * 233.58445 * 13 12 11 15 15 O 1.21284 * 120.00537 * 354.93783 * 14 13 12 16 16 C 1.50701 * 119.99936 * 174.93428 * 14 13 12 17 17 C 1.52995 * 112.85144 * 291.83411 * 16 14 13 18 18 F 1.39902 * 109.47311 * 305.09888 * 17 16 14 19 19 C 1.53787 * 113.61435 * 160.52945 * 16 14 13 20 20 C 1.53783 * 87.08013 * 220.01905 * 19 16 14 21 21 C 1.53780 * 113.61379 * 63.03292 * 16 14 13 22 22 C 1.46923 * 118.74178 * 53.60980 * 13 12 11 23 23 C 1.53043 * 109.45914 * 275.06969 * 10 9 7 24 24 H 0.97001 * 119.99663 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99841 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.45036 * 35.02513 * 10 9 7 27 27 H 1.08999 * 109.50019 * 61.43683 * 11 10 9 28 28 H 1.08996 * 109.49756 * 301.33273 * 11 10 9 29 29 H 1.08999 * 109.58197 * 65.15603 * 12 11 10 30 30 H 1.09002 * 109.58470 * 185.57538 * 12 11 10 31 31 H 1.09004 * 109.46989 * 65.09288 * 17 16 14 32 32 H 1.09000 * 109.47353 * 185.09337 * 17 16 14 33 33 H 1.08995 * 113.61365 * 334.57046 * 19 16 14 34 34 H 1.08999 * 113.61125 * 105.47301 * 19 16 14 35 35 H 1.08993 * 113.61851 * 270.88691 * 20 19 16 36 36 H 1.09003 * 113.61125 * 139.97765 * 20 19 16 37 37 H 1.08997 * 113.61461 * 254.53127 * 21 16 14 38 38 H 1.09004 * 113.61469 * 25.34345 * 21 16 14 39 39 H 1.08998 * 109.58761 * 66.17459 * 22 13 12 40 40 H 1.08994 * 109.58605 * 186.60146 * 22 13 12 41 41 H 1.08999 * 109.50020 * 58.65561 * 23 10 9 42 42 H 1.09009 * 109.49515 * 298.56346 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.1803 -4.7522 0.6092 12 6 1.9618 -6.0695 0.6392 13 7 2.4412 -6.3659 -0.7176 14 6 2.1732 -7.5531 -1.2964 15 8 1.6110 -8.4226 -0.6649 16 6 2.5721 -7.8003 -2.7285 17 6 1.7713 -6.9567 -3.7224 18 9 0.4037 -7.1721 -3.5213 19 6 2.6429 -9.2910 -3.0998 20 6 3.9056 -8.9488 -3.9082 21 6 4.0912 -7.7507 -2.9622 22 6 3.2188 -5.3437 -1.4312 23 6 2.4233 -4.0346 -1.4379 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 2.9683 -3.5504 0.5893 27 1 0.2813 -4.8763 0.0055 28 1 0.9012 -4.4715 1.6248 29 1 2.8120 -5.9746 1.3147 30 1 1.3096 -6.8736 0.9802 31 1 1.9991 -5.9017 -3.5698 32 1 2.0384 -7.2426 -4.7397 33 1 2.8332 -9.9444 -2.2485 34 1 1.8085 -9.6278 -3.7150 35 1 3.6996 -8.6629 -4.9396 36 1 4.6936 -9.6973 -3.8247 37 1 4.4261 -6.8442 -3.4663 38 1 4.6776 -7.9816 -2.0728 39 1 4.1715 -5.1896 -0.9246 40 1 3.3960 -5.6690 -2.4562 41 1 3.0288 -3.2431 -1.8794 42 1 1.5124 -4.1654 -2.0224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997015538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:55 Heat of formation + Delta-G solvation = -55.451309 kcal Electronic energy + Delta-G solvation = -23720.968367 eV Core-core repulsion = 20230.124824 eV Total energy + Delta-G solvation = -3490.843542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.70630 -40.83529 -38.40646 -37.09575 -34.50680 -32.09835 -31.04596 -29.42495 -28.76290 -26.06097 -25.54745 -24.28063 -22.99294 -22.52245 -20.73932 -19.50810 -18.63213 -17.36498 -17.05454 -16.50434 -16.11470 -15.75849 -15.41722 -14.84627 -14.59748 -14.45476 -14.01997 -13.75810 -13.57500 -13.41408 -13.14691 -12.73607 -12.45858 -12.26322 -12.10945 -11.84039 -11.61460 -11.53634 -11.18202 -10.98192 -10.89107 -10.85902 -10.66330 -10.58950 -10.42962 -10.25727 -9.85086 -9.70359 -9.50813 -8.93445 -8.49462 -7.00656 -5.79983 -3.09557 2.61732 3.06217 3.40211 3.45383 3.47486 3.95358 4.03412 4.28995 4.41212 4.54646 4.55983 4.77798 4.87991 5.01807 5.09845 5.27413 5.31888 5.33519 5.39129 5.44044 5.51459 5.52418 5.56402 5.61890 5.70520 5.73087 5.82365 5.92731 5.99083 6.05032 6.20974 6.33905 6.38004 6.48649 6.60785 6.86555 7.00748 7.51196 7.65379 8.23354 8.38115 9.49316 10.06908 10.41588 11.42505 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.004077 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.327861 B = 6866.970776 C = 7051.769225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.180 3.820 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.602 5.602 14 C 0.533 3.467 15 O -0.542 6.542 16 C -0.144 4.144 17 C 0.087 3.913 18 F -0.206 7.206 19 C -0.107 4.107 20 C -0.143 4.143 21 C -0.120 4.120 22 C 0.100 3.900 23 C -0.153 4.153 24 H 0.255 0.745 25 H 0.384 0.616 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.062 -16.643 -7.685 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.070 3.930 11 C -0.178 4.178 12 C -0.006 4.006 13 N -0.335 5.335 14 C 0.320 3.680 15 O -0.419 6.419 16 C -0.148 4.148 17 C 0.032 3.968 18 F -0.187 7.187 19 C -0.145 4.145 20 C -0.181 4.181 21 C -0.157 4.157 22 C -0.023 4.023 23 C -0.195 4.195 24 H 0.065 0.935 25 H 0.218 0.782 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.837 -16.932 -7.299 20.446 hybrid contribution 0.041 1.180 -0.043 1.182 sum 8.878 -15.751 -7.341 19.515 Atomic orbital electron populations 1.69669 1.05138 1.25704 1.57448 1.24752 0.95483 0.97698 1.02905 0.86211 0.78664 0.83927 0.77498 1.21733 1.21778 1.20757 1.19225 0.90944 0.84095 1.42970 0.91180 1.42444 1.05837 0.99684 1.88473 1.20140 0.94444 0.86111 0.92321 1.22211 0.99258 0.94088 1.02271 1.21621 0.98667 0.98053 0.82267 1.48110 1.53839 1.14650 1.16896 1.20053 0.78375 0.81737 0.87805 1.90656 1.42565 1.43881 1.64780 1.22775 0.98369 0.99953 0.93683 1.21844 0.76119 1.00410 0.98469 1.92817 1.32992 1.96386 1.96539 1.22788 0.98211 0.93110 1.00414 1.22911 0.98453 0.98184 0.98516 1.22997 0.92308 0.99695 1.00746 1.22082 0.94659 0.88850 0.96741 1.22719 1.00004 0.94709 1.02028 0.93466 0.78231 0.93420 0.91792 0.90514 0.91609 0.89476 0.89446 0.89665 0.88773 0.90612 0.89689 0.90633 0.89950 0.88947 0.91340 0.90176 0.90582 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.65 5.12 -53.39 -0.27 -17.92 16 10 C 0.18 3.40 2.73 -67.89 -0.19 3.21 16 11 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 12 C 0.12 1.72 6.42 -3.71 -0.02 1.69 16 13 N -0.60 -8.50 2.97 -172.77 -0.51 -9.01 16 14 C 0.53 7.88 6.41 -10.99 -0.07 7.81 16 15 O -0.54 -9.86 15.65 5.55 0.09 -9.77 16 16 C -0.14 -1.58 0.51 -154.85 -0.08 -1.66 16 17 C 0.09 0.93 6.49 37.16 0.24 1.17 16 18 F -0.21 -3.05 17.07 2.25 0.04 -3.02 16 19 C -0.11 -1.06 6.89 -25.91 -0.18 -1.24 16 20 C -0.14 -0.99 7.73 -25.92 -0.20 -1.19 16 21 C -0.12 -0.95 5.68 -25.92 -0.15 -1.10 16 22 C 0.10 1.24 5.27 -3.71 -0.02 1.22 16 23 C -0.15 -2.48 5.60 -26.61 -0.15 -2.63 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 26 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.35 7.04 -51.93 -0.37 0.98 16 31 H 0.09 0.91 6.01 -51.93 -0.31 0.60 16 32 H 0.09 0.65 7.32 -51.93 -0.38 0.27 16 33 H 0.09 1.03 7.77 -51.93 -0.40 0.63 16 34 H 0.08 0.75 8.10 -51.93 -0.42 0.32 16 35 H 0.08 0.48 7.61 -51.93 -0.40 0.08 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.53 7.09 -51.93 -0.37 0.16 16 38 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.80 3.05 -51.93 -0.16 0.65 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.06 1.04 8.05 -51.92 -0.42 0.63 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -32.37 330.45 -7.65 -40.02 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.46 Total: 7.22 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.21 Total: -2.27 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.06 Total: -54.05 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.37 -7.65 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997015538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.430 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds