Wall clock time and date at job start Tue Mar 31 2020 06:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 120.00003 * 2 1 4 4 H 1.48494 * 109.47329 * 270.00222 * 3 2 1 5 5 H 1.48498 * 109.47129 * 30.00380 * 3 2 1 6 6 H 1.48499 * 109.46558 * 150.00345 * 3 2 1 7 7 C 1.38809 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00339 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00091 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.46080 * 155.00120 * 10 9 7 12 12 C 1.53201 * 109.31031 * 181.38292 * 11 10 9 13 13 N 1.46924 * 108.77489 * 305.36468 * 12 11 10 14 14 C 1.34773 * 120.62734 * 233.58445 * 13 12 11 15 15 O 1.21284 * 120.00537 * 354.93783 * 14 13 12 16 16 C 1.50701 * 119.99936 * 174.93428 * 14 13 12 17 17 C 1.52995 * 112.85144 * 291.83411 * 16 14 13 18 18 F 1.39902 * 109.47311 * 305.09888 * 17 16 14 19 19 C 1.53787 * 113.61435 * 160.52945 * 16 14 13 20 20 C 1.53783 * 87.08013 * 220.01905 * 19 16 14 21 21 C 1.53780 * 113.61379 * 63.03292 * 16 14 13 22 22 C 1.46923 * 118.74178 * 53.60980 * 13 12 11 23 23 C 1.53043 * 109.45914 * 275.06969 * 10 9 7 24 24 H 0.97001 * 119.99663 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99841 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.45036 * 35.02513 * 10 9 7 27 27 H 1.08999 * 109.50019 * 61.43683 * 11 10 9 28 28 H 1.08996 * 109.49756 * 301.33273 * 11 10 9 29 29 H 1.08999 * 109.58197 * 65.15603 * 12 11 10 30 30 H 1.09002 * 109.58470 * 185.57538 * 12 11 10 31 31 H 1.09004 * 109.46989 * 65.09288 * 17 16 14 32 32 H 1.09000 * 109.47353 * 185.09337 * 17 16 14 33 33 H 1.08995 * 113.61365 * 334.57046 * 19 16 14 34 34 H 1.08999 * 113.61125 * 105.47301 * 19 16 14 35 35 H 1.08993 * 113.61851 * 270.88691 * 20 19 16 36 36 H 1.09003 * 113.61125 * 139.97765 * 20 19 16 37 37 H 1.08997 * 113.61461 * 254.53127 * 21 16 14 38 38 H 1.09004 * 113.61469 * 25.34345 * 21 16 14 39 39 H 1.08998 * 109.58761 * 66.17459 * 22 13 12 40 40 H 1.08994 * 109.58605 * 186.60146 * 22 13 12 41 41 H 1.08999 * 109.50020 * 58.65561 * 23 10 9 42 42 H 1.09009 * 109.49515 * 298.56346 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.1803 -4.7522 0.6092 12 6 1.9618 -6.0695 0.6392 13 7 2.4412 -6.3659 -0.7176 14 6 2.1732 -7.5531 -1.2964 15 8 1.6110 -8.4226 -0.6649 16 6 2.5721 -7.8003 -2.7285 17 6 1.7713 -6.9567 -3.7224 18 9 0.4037 -7.1721 -3.5213 19 6 2.6429 -9.2910 -3.0998 20 6 3.9056 -8.9488 -3.9082 21 6 4.0912 -7.7507 -2.9622 22 6 3.2188 -5.3437 -1.4312 23 6 2.4233 -4.0346 -1.4379 24 1 -0.4850 0.8401 0.0004 25 1 0.3555 -2.3880 -0.0005 26 1 2.9683 -3.5504 0.5893 27 1 0.2813 -4.8763 0.0055 28 1 0.9012 -4.4715 1.6248 29 1 2.8120 -5.9746 1.3147 30 1 1.3096 -6.8736 0.9802 31 1 1.9991 -5.9017 -3.5698 32 1 2.0384 -7.2426 -4.7397 33 1 2.8332 -9.9444 -2.2485 34 1 1.8085 -9.6278 -3.7150 35 1 3.6996 -8.6629 -4.9396 36 1 4.6936 -9.6973 -3.8247 37 1 4.4261 -6.8442 -3.4663 38 1 4.6776 -7.9816 -2.0728 39 1 4.1715 -5.1896 -0.9246 40 1 3.3960 -5.6690 -2.4562 41 1 3.0288 -3.2431 -1.8794 42 1 1.5124 -4.1654 -2.0224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997015538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:54 Heat of formation + Delta-G solvation = -76.075274 kcal Electronic energy + Delta-G solvation = -23721.862689 eV Core-core repulsion = 20230.124824 eV Total energy + Delta-G solvation = -3491.737865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.71207 -41.84246 -39.46363 -38.34390 -36.16775 -33.84462 -32.31372 -31.05453 -29.71267 -26.92483 -26.74612 -25.58071 -24.36243 -23.85409 -21.98730 -20.61028 -19.67280 -19.05369 -18.31944 -17.56854 -17.01125 -16.80186 -16.69490 -16.32724 -15.74152 -15.51044 -15.34453 -15.31151 -15.03741 -14.77820 -14.45798 -13.79895 -13.49130 -13.41718 -13.14347 -13.03760 -12.87455 -12.80513 -12.65304 -12.35410 -12.17104 -12.13133 -12.03068 -11.97026 -11.71158 -11.36725 -11.33137 -11.24147 -10.91066 -10.57231 -9.70262 -9.00763 -7.92194 -5.21505 1.49213 1.50297 1.50775 1.59114 1.97317 2.57837 3.18934 3.20749 3.41371 3.56290 3.59189 3.78808 3.84517 3.87037 3.99318 4.10146 4.15184 4.22038 4.31372 4.37426 4.44578 4.56355 4.65292 4.72623 4.78834 4.79904 4.82851 4.85370 4.98907 5.01524 5.06753 5.12899 5.13988 5.28378 5.43431 5.48506 5.54312 5.61536 6.28860 6.38850 7.09470 7.34927 8.10202 8.33494 9.31647 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.004077 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.327861 B = 6866.970776 C = 7051.769225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.739 5.739 10 C 0.174 3.826 11 C -0.128 4.128 12 C 0.122 3.878 13 N -0.604 5.604 14 C 0.525 3.475 15 O -0.585 6.585 16 C -0.151 4.151 17 C 0.077 3.923 18 F -0.234 7.234 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.113 4.113 22 C 0.108 3.892 23 C -0.143 4.143 24 H 0.249 0.751 25 H 0.369 0.631 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.104 -17.135 -9.224 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.366 4.366 8 H 0.100 0.900 9 N -0.378 5.378 10 C 0.066 3.934 11 C -0.167 4.167 12 C -0.001 4.001 13 N -0.336 5.336 14 C 0.314 3.686 15 O -0.465 6.465 16 C -0.154 4.154 17 C 0.023 3.977 18 F -0.216 7.216 19 C -0.154 4.154 20 C -0.162 4.162 21 C -0.150 4.150 22 C -0.015 4.015 23 C -0.183 4.183 24 H 0.058 0.942 25 H 0.200 0.800 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.142 0.858 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.091 0.909 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.944 -17.455 -8.851 22.927 hybrid contribution -0.925 1.242 0.476 1.620 sum 11.019 -16.212 -8.375 21.317 Atomic orbital electron populations 1.69841 1.06818 1.25906 1.59897 1.25565 0.96250 1.01148 1.04029 0.85159 0.77754 0.79575 0.77400 1.21392 1.22812 1.19117 1.19653 0.91569 0.84949 1.40479 0.90023 1.42686 1.05355 1.01114 1.88674 1.20401 0.94223 0.84473 0.94318 1.22061 0.98496 0.94766 1.01387 1.21504 0.98999 0.96112 0.83511 1.48217 1.53737 1.15001 1.16601 1.20851 0.77346 0.81136 0.89260 1.90631 1.44423 1.45274 1.66188 1.22943 1.00814 1.00848 0.90842 1.22199 0.74387 1.00674 1.00438 1.92762 1.35476 1.96525 1.96797 1.22829 1.00020 0.92123 1.00461 1.22888 0.96686 0.97716 0.98878 1.23054 0.89321 1.01384 1.01228 1.22166 0.94254 0.86225 0.98812 1.22491 0.99823 0.96804 0.99229 0.94227 0.80008 0.92952 0.93749 0.91017 0.89526 0.90543 0.89128 0.85801 0.90578 0.91080 0.87538 0.89327 0.87408 0.89064 0.89046 0.87076 0.90880 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 45.07 29.55 68.60 2.03 47.09 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.23 -12.53 9.93 84.03 0.83 -11.70 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -36.38 5.12 -322.82 -1.65 -38.03 16 10 C 0.17 6.46 2.73 45.02 0.12 6.59 16 11 C -0.13 -4.35 5.55 30.67 0.17 -4.18 16 12 C 0.12 3.52 6.42 86.37 0.55 4.07 16 13 N -0.60 -16.16 2.97 -818.92 -2.43 -18.60 16 14 C 0.52 15.05 6.41 87.66 0.56 15.61 16 15 O -0.58 -21.61 15.65 -3.04 -0.05 -21.66 16 16 C -0.15 -2.97 0.51 -52.40 -0.03 -3.00 16 17 C 0.08 1.47 6.49 71.98 0.47 1.94 16 18 F -0.23 -6.82 17.07 44.97 0.77 -6.06 16 19 C -0.12 -2.10 6.89 31.12 0.21 -1.88 16 20 C -0.12 -1.22 7.73 31.12 0.24 -0.98 16 21 C -0.11 -1.32 5.68 31.12 0.18 -1.14 16 22 C 0.11 2.35 5.27 86.36 0.46 2.81 16 23 C -0.14 -4.40 5.60 30.67 0.17 -4.23 16 24 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.37 20.12 7.80 -92.71 -0.72 19.40 16 26 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.08 2.41 7.04 -2.39 -0.02 2.39 16 31 H 0.09 1.64 6.01 -2.39 -0.01 1.62 16 32 H 0.12 1.40 7.32 -2.39 -0.02 1.38 16 33 H 0.08 1.64 7.77 -2.39 -0.02 1.62 16 34 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.11 0.64 7.61 -2.39 -0.02 0.62 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.11 0.75 7.09 -2.39 -0.02 0.74 16 38 H 0.09 1.15 8.09 -2.38 -0.02 1.13 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.11 1.78 3.05 -2.39 -0.01 1.77 16 41 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.04 1.47 8.05 -2.38 -0.02 1.45 16 Total: -1.00 -72.59 330.45 3.65 -68.94 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.30 Total: 27.57 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 4.41 Total: -0.01 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -3.80 Total: -115.88 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 0.77 Total: -6.06 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -72.59 3.65 -68.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997015538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.137 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds