Wall clock time and date at job start Tue Mar 31 2020 06:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00006 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00274 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99895 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 H 1.09002 * 109.50369 * 34.93213 * 10 9 7 12 12 C 1.53041 * 109.49594 * 274.83414 * 10 9 7 13 13 C 1.53043 * 109.53838 * 178.68449 * 12 10 9 14 14 C 1.53197 * 109.31161 * 61.36733 * 13 12 10 15 15 N 1.46928 * 108.77576 * 305.36176 * 14 13 12 16 16 C 1.34773 * 120.63587 * 233.58566 * 15 14 13 17 17 O 1.21273 * 120.00262 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99424 * 0.02751 * 16 15 14 19 19 F 1.39898 * 110.02179 * 54.29638 * 18 16 15 20 20 C 1.54262 * 110.03042 * 292.90251 * 18 16 15 21 21 C 1.54970 * 104.16088 * 217.14022 * 20 18 16 22 22 C 1.54892 * 102.77646 * 37.89020 * 21 20 18 23 23 C 1.53880 * 110.03105 * 175.68928 * 18 16 15 24 24 C 1.46934 * 118.73380 * 53.60911 * 15 14 13 25 25 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.46172 * 298.70249 * 12 10 9 28 28 H 1.08993 * 109.46065 * 58.66965 * 12 10 9 29 29 H 1.09000 * 109.49755 * 301.41688 * 13 12 10 30 30 H 1.09001 * 109.52453 * 181.33228 * 13 12 10 31 31 H 1.09004 * 109.58716 * 185.57903 * 14 13 12 32 32 H 1.08996 * 109.58897 * 65.15056 * 14 13 12 33 33 H 1.08996 * 110.49125 * 335.78626 * 20 18 16 34 34 H 1.08997 * 110.48978 * 98.43259 * 20 18 16 35 35 H 1.09004 * 110.71875 * 279.57451 * 21 20 18 36 36 H 1.09000 * 110.92296 * 156.29293 * 21 20 18 37 37 H 1.08993 * 110.48479 * 203.40849 * 22 21 20 38 38 H 1.08997 * 110.60001 * 80.81697 * 22 21 20 39 39 H 1.08997 * 110.02895 * 238.57169 * 23 18 16 40 40 H 1.09001 * 110.02849 * 359.94825 * 23 18 16 41 41 H 1.08999 * 109.58453 * 186.60434 * 24 15 14 42 42 H 1.09001 * 109.58517 * 66.18340 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 1 2.9715 -3.5526 0.5770 12 6 2.4131 -4.0340 -1.4482 13 6 3.2067 -5.3425 -1.4537 14 6 2.3442 -6.4607 -0.8598 15 7 1.8782 -6.0431 0.4696 16 6 2.0848 -6.8260 1.5470 17 8 1.6949 -6.4703 2.6388 18 6 2.8004 -8.1436 1.3947 19 9 4.0359 -7.9480 0.7684 20 6 1.9382 -9.1208 0.5693 21 6 2.1858 -10.4988 1.2335 22 6 2.2606 -10.1446 2.7396 23 6 3.0057 -8.7943 2.7740 24 6 1.1823 -4.7558 0.6020 25 1 -0.4849 0.8401 0.0004 26 1 0.3554 -2.3880 -0.0016 27 1 1.4980 -4.1619 -2.0264 28 1 3.0157 -3.2421 -1.8929 29 1 4.1098 -5.2228 -0.8551 30 1 3.4800 -5.5986 -2.4773 31 1 2.9371 -7.3709 -0.7698 32 1 1.4864 -6.6433 -1.5069 33 1 0.8846 -8.8494 0.6354 34 1 2.2653 -9.1334 -0.4704 35 1 3.1269 -10.9288 0.8906 36 1 1.3575 -11.1798 1.0376 37 1 2.8226 -10.9043 3.2826 38 1 1.2600 -10.0390 3.1588 39 1 4.0679 -8.9584 2.9549 40 1 2.5886 -8.1566 3.5534 41 1 1.0085 -4.5412 1.6565 42 1 0.2296 -4.7995 0.0741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999556163.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:03 Heat of formation + Delta-G solvation = -79.269015 kcal Electronic energy + Delta-G solvation = -23630.546028 eV Core-core repulsion = 20138.669672 eV Total energy + Delta-G solvation = -3491.876356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.13254 -40.12350 -37.86992 -36.76177 -34.52951 -32.26207 -31.28163 -29.45856 -29.10660 -27.96009 -25.29947 -23.88734 -22.15302 -21.71405 -21.22607 -19.84624 -19.02613 -17.71932 -17.20861 -16.58783 -15.99379 -15.54442 -15.04702 -14.64513 -14.50659 -14.18870 -14.03645 -13.77907 -13.63376 -13.40261 -13.28851 -12.93640 -12.62821 -12.31422 -12.01472 -11.79459 -11.54375 -11.42077 -11.12518 -11.01758 -10.92797 -10.89876 -10.84500 -10.60089 -10.42258 -10.32814 -10.08384 -9.74853 -9.55203 -8.92061 -8.48091 -6.99946 -5.78466 -3.08122 2.45713 2.92312 3.43334 3.48800 3.50477 3.92216 4.02502 4.24586 4.37172 4.58231 4.82771 4.95041 4.98275 5.08401 5.14390 5.19909 5.27554 5.32642 5.44642 5.52048 5.54932 5.57631 5.64603 5.72537 5.75859 5.80665 5.85673 5.95185 6.02131 6.07902 6.12771 6.22764 6.39869 6.53283 6.65425 6.86302 7.03372 7.44164 7.69132 8.08126 8.39533 9.50804 10.05510 10.40842 11.44059 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033858 B = 0.003849 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.776464 B = 7273.552167 C = 7532.010203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.137 4.137 13 C -0.131 4.131 14 C 0.094 3.906 15 N -0.592 5.592 16 C 0.501 3.499 17 O -0.526 6.526 18 C 0.103 3.897 19 F -0.189 7.189 20 C -0.142 4.142 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.143 4.143 24 C 0.104 3.896 25 H 0.256 0.744 26 H 0.384 0.616 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -22.607 -0.688 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.178 4.178 13 C -0.170 4.170 14 C -0.028 4.028 15 N -0.324 5.324 16 C 0.285 3.715 17 O -0.402 6.402 18 C 0.081 3.919 19 F -0.170 7.170 20 C -0.180 4.180 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.181 4.181 24 C -0.018 4.018 25 H 0.065 0.935 26 H 0.218 0.782 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.718 -22.221 -0.098 22.717 hybrid contribution 0.281 1.103 -0.309 1.179 sum 4.999 -21.118 -0.407 21.705 Atomic orbital electron populations 1.69663 1.05118 1.25736 1.57491 1.24744 0.95526 0.97703 1.02801 0.86180 0.78704 0.83762 0.77495 1.21700 1.21729 1.20719 1.19215 0.90998 0.83869 1.42961 0.91137 1.42306 1.05789 0.99502 1.88601 1.20470 0.94642 0.85900 0.93231 0.93145 1.22291 0.99618 0.95380 1.00517 1.21903 0.98909 0.95728 1.00489 1.22112 0.98626 0.98880 0.83205 1.48085 1.56444 1.20165 1.07674 1.20632 0.80670 0.85642 0.84516 1.90693 1.51608 1.72576 1.25366 1.21794 0.80738 0.94277 0.95080 1.92863 1.44350 1.96212 1.83563 1.23081 1.00568 0.94619 0.99730 1.22541 1.02402 0.95938 0.95206 1.22347 1.01030 0.96066 0.96491 1.22748 1.02684 0.97409 0.95271 1.22088 0.95118 0.81197 1.03431 0.93455 0.78195 0.92473 0.91483 0.91690 0.91260 0.89096 0.91356 0.89384 0.89211 0.90798 0.90593 0.90822 0.90904 0.89829 0.87806 0.88838 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -18.14 5.12 -53.31 -0.27 -18.41 16 10 C 0.17 3.42 2.92 -67.81 -0.20 3.22 16 11 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 12 C -0.14 -2.39 5.47 -26.69 -0.15 -2.54 16 13 C -0.13 -1.78 6.08 -26.61 -0.16 -1.95 16 14 C 0.09 1.17 5.54 -3.71 -0.02 1.14 16 15 N -0.59 -9.04 2.97 -172.76 -0.51 -9.55 16 16 C 0.50 7.79 6.68 -10.99 -0.07 7.72 16 17 O -0.53 -9.88 14.63 5.56 0.08 -9.80 16 18 C 0.10 1.22 1.08 -90.65 -0.10 1.13 16 19 F -0.19 -2.40 14.71 2.25 0.03 -2.36 16 20 C -0.14 -1.27 5.19 -25.03 -0.13 -1.40 16 21 C -0.12 -0.89 6.91 -24.69 -0.17 -1.06 16 22 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 23 C -0.14 -1.54 6.25 -25.61 -0.16 -1.70 16 24 C 0.10 1.88 5.91 -3.71 -0.02 1.86 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.98 3.65 -51.93 -0.19 0.79 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.81 7.85 -51.93 -0.41 0.40 16 34 H 0.09 0.69 6.92 -51.93 -0.36 0.33 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.83 8.02 -51.93 -0.42 0.41 16 40 H 0.10 1.32 6.40 -51.93 -0.33 0.99 16 41 H 0.09 1.89 7.01 -51.93 -0.36 1.53 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -31.57 328.93 -8.19 -39.76 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.58 Total: 7.31 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.60 Total: -1.98 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.06 Total: -55.39 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.03 Total: -2.36 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.57 -8.19 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999556163.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.506 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds