Wall clock time and date at job start Tue Mar 31 2020 06:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00006 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00274 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99895 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 H 1.09002 * 109.50369 * 34.93213 * 10 9 7 12 12 C 1.53041 * 109.49594 * 274.83414 * 10 9 7 13 13 C 1.53043 * 109.53838 * 178.68449 * 12 10 9 14 14 C 1.53197 * 109.31161 * 61.36733 * 13 12 10 15 15 N 1.46928 * 108.77576 * 305.36176 * 14 13 12 16 16 C 1.34773 * 120.63587 * 233.58566 * 15 14 13 17 17 O 1.21273 * 120.00262 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99424 * 0.02751 * 16 15 14 19 19 F 1.39898 * 110.02179 * 54.29638 * 18 16 15 20 20 C 1.54262 * 110.03042 * 292.90251 * 18 16 15 21 21 C 1.54970 * 104.16088 * 217.14022 * 20 18 16 22 22 C 1.54892 * 102.77646 * 37.89020 * 21 20 18 23 23 C 1.53880 * 110.03105 * 175.68928 * 18 16 15 24 24 C 1.46934 * 118.73380 * 53.60911 * 15 14 13 25 25 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 27 27 H 1.08996 * 109.46172 * 298.70249 * 12 10 9 28 28 H 1.08993 * 109.46065 * 58.66965 * 12 10 9 29 29 H 1.09000 * 109.49755 * 301.41688 * 13 12 10 30 30 H 1.09001 * 109.52453 * 181.33228 * 13 12 10 31 31 H 1.09004 * 109.58716 * 185.57903 * 14 13 12 32 32 H 1.08996 * 109.58897 * 65.15056 * 14 13 12 33 33 H 1.08996 * 110.49125 * 335.78626 * 20 18 16 34 34 H 1.08997 * 110.48978 * 98.43259 * 20 18 16 35 35 H 1.09004 * 110.71875 * 279.57451 * 21 20 18 36 36 H 1.09000 * 110.92296 * 156.29293 * 21 20 18 37 37 H 1.08993 * 110.48479 * 203.40849 * 22 21 20 38 38 H 1.08997 * 110.60001 * 80.81697 * 22 21 20 39 39 H 1.08997 * 110.02895 * 238.57169 * 23 18 16 40 40 H 1.09001 * 110.02849 * 359.94825 * 23 18 16 41 41 H 1.08999 * 109.58453 * 186.60434 * 24 15 14 42 42 H 1.09001 * 109.58517 * 66.18340 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 1 2.9715 -3.5526 0.5770 12 6 2.4131 -4.0340 -1.4482 13 6 3.2067 -5.3425 -1.4537 14 6 2.3442 -6.4607 -0.8598 15 7 1.8782 -6.0431 0.4696 16 6 2.0848 -6.8260 1.5470 17 8 1.6949 -6.4703 2.6388 18 6 2.8004 -8.1436 1.3947 19 9 4.0359 -7.9480 0.7684 20 6 1.9382 -9.1208 0.5693 21 6 2.1858 -10.4988 1.2335 22 6 2.2606 -10.1446 2.7396 23 6 3.0057 -8.7943 2.7740 24 6 1.1823 -4.7558 0.6020 25 1 -0.4849 0.8401 0.0004 26 1 0.3554 -2.3880 -0.0016 27 1 1.4980 -4.1619 -2.0264 28 1 3.0157 -3.2421 -1.8929 29 1 4.1098 -5.2228 -0.8551 30 1 3.4800 -5.5986 -2.4773 31 1 2.9371 -7.3709 -0.7698 32 1 1.4864 -6.6433 -1.5069 33 1 0.8846 -8.8494 0.6354 34 1 2.2653 -9.1334 -0.4704 35 1 3.1269 -10.9288 0.8906 36 1 1.3575 -11.1798 1.0376 37 1 2.8226 -10.9043 3.2826 38 1 1.2600 -10.0390 3.1588 39 1 4.0679 -8.9584 2.9549 40 1 2.5886 -8.1566 3.5534 41 1 1.0085 -4.5412 1.6565 42 1 0.2296 -4.7995 0.0741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999556163.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:02 Heat of formation + Delta-G solvation = -98.956821 kcal Electronic energy + Delta-G solvation = -23631.399755 eV Core-core repulsion = 20138.669672 eV Total energy + Delta-G solvation = -3492.730083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.11111 -41.36633 -39.11492 -37.72559 -36.28945 -33.93600 -32.84269 -30.77148 -29.85932 -29.31305 -26.55631 -25.81879 -23.49545 -22.92989 -21.89000 -21.20174 -20.20134 -19.25344 -18.80078 -17.63175 -17.20389 -16.70298 -16.35441 -16.07948 -15.86336 -15.36583 -15.30766 -15.18598 -14.93351 -14.73023 -14.46250 -14.19001 -13.93271 -13.69554 -13.04202 -12.99918 -12.86899 -12.55370 -12.41370 -12.29975 -12.19746 -12.14342 -12.07139 -11.89205 -11.85833 -11.73927 -11.57104 -11.46470 -10.94696 -10.79329 -9.81538 -9.07057 -7.98516 -5.28422 1.23865 1.44857 1.46747 1.55062 1.71430 2.53504 2.97026 3.21725 3.34051 3.36094 3.57254 3.73621 3.95193 3.99425 4.05269 4.19621 4.23435 4.27776 4.30179 4.36944 4.42326 4.52545 4.66378 4.68251 4.76576 4.78257 4.86732 4.98633 4.99949 5.08087 5.10623 5.17576 5.20176 5.35175 5.36605 5.39560 5.46177 5.53666 6.21699 6.23349 6.84857 7.29275 8.00586 8.26049 9.24692 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033858 B = 0.003849 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.776464 B = 7273.552167 C = 7532.010203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.167 3.833 11 H 0.027 0.973 12 C -0.127 4.127 13 C -0.123 4.123 14 C 0.092 3.908 15 N -0.592 5.592 16 C 0.491 3.509 17 O -0.568 6.568 18 C 0.105 3.895 19 F -0.192 7.192 20 C -0.140 4.140 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.147 4.147 24 C 0.117 3.883 25 H 0.252 0.748 26 H 0.375 0.625 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 -25.077 -2.212 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.058 3.942 11 H 0.045 0.955 12 C -0.167 4.167 13 C -0.162 4.162 14 C -0.028 4.028 15 N -0.323 5.323 16 C 0.278 3.722 17 O -0.448 6.448 18 C 0.084 3.916 19 F -0.172 7.172 20 C -0.177 4.177 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.185 4.185 24 C -0.007 4.007 25 H 0.061 0.939 26 H 0.207 0.793 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.864 -24.745 -1.649 25.484 hybrid contribution -0.025 1.839 0.211 1.852 sum 5.838 -22.906 -1.439 23.682 Atomic orbital electron populations 1.69812 1.06543 1.26179 1.59187 1.25544 0.96402 1.00990 1.03429 0.85150 0.77598 0.79477 0.77590 1.20985 1.22075 1.19801 1.19532 0.91232 0.85085 1.41606 0.91074 1.42456 1.05469 1.00621 1.88907 1.20609 0.93535 0.84902 0.95174 0.95486 1.22077 1.00107 0.97082 0.97468 1.21866 0.97926 0.93754 1.02637 1.22392 0.99718 0.99056 0.81677 1.48175 1.56066 1.18884 1.09171 1.21453 0.80208 0.86769 0.83754 1.90674 1.53305 1.73778 1.26998 1.21893 0.80680 0.92426 0.96598 1.92857 1.44557 1.96178 1.83625 1.23153 0.99661 0.94520 1.00402 1.22559 1.03892 0.95090 0.93740 1.22365 1.00640 0.94732 0.97878 1.22785 1.03426 0.98466 0.93831 1.21679 0.95370 0.82271 1.01394 0.93881 0.79328 0.92013 0.93421 0.92645 0.87713 0.86744 0.88875 0.89662 0.87195 0.89552 0.88608 0.88954 0.91340 0.89094 0.90535 0.91845 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.74 13.06 21.65 0.28 -59.46 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.24 -13.84 9.93 84.03 0.83 -13.00 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.73 -38.11 5.12 -322.58 -1.65 -39.76 16 10 C 0.17 6.95 2.92 45.07 0.13 7.08 16 11 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 12 C -0.13 -4.33 5.47 30.62 0.17 -4.16 16 13 C -0.12 -3.03 6.08 30.67 0.19 -2.85 16 14 C 0.09 2.01 5.54 86.36 0.48 2.49 16 15 N -0.59 -17.67 2.97 -818.88 -2.43 -20.10 16 16 C 0.49 15.25 6.68 87.66 0.59 15.83 16 17 O -0.57 -22.26 14.63 -3.01 -0.04 -22.31 16 18 C 0.11 2.34 1.08 -10.81 -0.01 2.32 16 19 F -0.19 -4.38 14.71 44.97 0.66 -3.72 16 20 C -0.14 -2.04 5.19 31.70 0.16 -1.87 16 21 C -0.12 -1.22 6.91 31.91 0.22 -1.00 16 22 C -0.12 -1.63 6.83 31.67 0.22 -1.42 16 23 C -0.15 -3.02 6.25 31.32 0.20 -2.83 16 24 C 0.12 4.31 5.91 86.36 0.51 4.82 16 25 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 26 H 0.37 20.61 7.80 -92.71 -0.72 19.88 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.11 2.02 3.65 -2.38 -0.01 2.01 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.33 7.85 -2.39 -0.02 1.31 16 34 H 0.11 1.17 6.92 -2.39 -0.02 1.16 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.69 8.02 -2.39 -0.02 1.67 16 40 H 0.08 2.01 6.40 -2.39 -0.02 2.00 16 41 H 0.06 2.72 7.01 -2.39 -0.02 2.70 16 42 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -70.94 328.93 3.28 -67.66 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.30 Total: 27.02 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 4.15 Total: 1.75 kcal Atomic # 7 Polarization: -115.52 SS G_CDS: -3.80 Total: -119.32 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.04 Total: -22.31 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.66 Total: -3.72 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -70.94 3.28 -67.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999556163.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.300 kcal (2) G-P(sol) polarization free energy of solvation -70.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds