Wall clock time and date at job start Tue Mar 31 2020 06:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47196 * 269.99501 * 3 2 1 5 5 H 1.48497 * 109.46980 * 29.99880 * 3 2 1 6 6 H 1.48506 * 109.47019 * 150.00112 * 3 2 1 7 7 C 1.38816 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99922 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00160 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00111 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49708 * 325.06460 * 10 9 7 12 12 C 1.53039 * 109.52698 * 85.14642 * 10 9 7 13 13 C 1.53043 * 109.53978 * 181.33592 * 12 10 9 14 14 C 1.53194 * 109.30763 * 298.63403 * 13 12 10 15 15 N 1.47195 * 108.85855 * 54.64999 * 14 13 12 16 16 C 1.34784 * 120.81297 * 126.33416 * 15 14 13 17 17 O 1.21283 * 119.99920 * 355.29720 * 16 15 14 18 18 C 1.50702 * 119.99804 * 175.29764 * 16 15 14 19 19 F 1.39898 * 110.01969 * 55.22567 * 18 16 15 20 20 C 1.54271 * 110.02950 * 293.78252 * 18 16 15 21 21 C 1.54889 * 104.19532 * 217.10684 * 20 18 16 22 22 C 1.54897 * 102.74790 * 37.94478 * 21 20 18 23 23 C 1.53872 * 110.03130 * 176.62058 * 18 16 15 24 24 C 1.46923 * 118.55912 * 306.47631 * 15 14 13 25 25 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99962 * 0.02562 * 9 7 2 27 27 H 1.09008 * 109.45709 * 301.35249 * 12 10 9 28 28 H 1.09000 * 109.46103 * 61.32394 * 12 10 9 29 29 H 1.08991 * 109.49785 * 58.58147 * 13 12 10 30 30 H 1.09003 * 109.49761 * 178.68667 * 13 12 10 31 31 H 1.09002 * 109.58235 * 174.42758 * 14 13 12 32 32 H 1.09000 * 109.58875 * 294.70110 * 14 13 12 33 33 H 1.09000 * 110.48892 * 335.78445 * 20 18 16 34 34 H 1.08993 * 110.48282 * 98.43172 * 20 18 16 35 35 H 1.09000 * 110.75773 * 279.63533 * 21 20 18 36 36 H 1.08997 * 110.91518 * 156.32984 * 21 20 18 37 37 H 1.09002 * 110.48375 * 203.38233 * 22 21 20 38 38 H 1.08993 * 110.59894 * 80.79017 * 22 21 20 39 39 H 1.09004 * 110.03124 * 238.56787 * 23 18 16 40 40 H 1.09002 * 110.03214 * 359.94731 * 23 18 16 41 41 H 1.08992 * 109.58876 * 293.68462 * 24 15 14 42 42 H 1.09002 * 109.59269 * 173.39426 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0011 10 6 4.1119 -2.4710 0.0011 11 1 3.5641 -3.2074 0.5891 12 6 4.2626 -2.9747 -1.4362 13 6 4.9985 -4.3166 -1.4338 14 6 6.3974 -4.1260 -0.8391 15 7 6.2691 -3.5060 0.4897 16 6 6.8407 -4.0694 1.5725 17 8 7.3971 -5.1427 1.4752 18 6 6.7884 -3.3657 2.9041 19 9 5.4614 -3.0801 3.2431 20 6 7.6122 -2.0627 2.8459 21 6 8.2743 -1.9692 4.2431 22 6 8.6251 -3.4454 4.5545 23 6 7.4324 -4.2448 3.9905 24 6 5.5009 -2.2596 0.6120 25 1 -0.4850 0.8401 -0.0004 26 1 3.8645 -0.3622 0.0014 27 1 3.2758 -3.1025 -1.8814 28 1 4.8320 -2.2494 -2.0174 29 1 4.4424 -5.0354 -0.8323 30 1 5.0848 -4.6860 -2.4557 31 1 6.8888 -5.0943 -0.7437 32 1 6.9864 -3.4800 -1.4902 33 1 8.3722 -2.1263 2.0672 34 1 6.9600 -1.2064 2.6748 35 1 7.5718 -1.5759 4.9779 36 1 9.1756 -1.3575 4.2064 37 1 8.7120 -3.5980 5.6303 38 1 9.5489 -3.7340 4.0533 39 1 6.7113 -4.4482 4.7822 40 1 7.7820 -5.1807 3.5547 41 1 6.0158 -1.4594 0.0805 42 1 5.4006 -1.9938 1.6643 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999556164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:06 Heat of formation + Delta-G solvation = -75.046983 kcal Electronic energy + Delta-G solvation = -23990.933275 eV Core-core repulsion = 20499.240000 eV Total energy + Delta-G solvation = -3491.693275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.01081 -40.17860 -37.93893 -36.81355 -34.51016 -32.55725 -31.53370 -29.13038 -29.03960 -28.63155 -25.35860 -23.68845 -22.54064 -21.36210 -21.00096 -19.98954 -19.08593 -17.90234 -17.52393 -16.52475 -16.03772 -15.45595 -15.05567 -14.78136 -14.57298 -14.26515 -14.08634 -13.78132 -13.66483 -13.40796 -13.35427 -12.69910 -12.69061 -12.46498 -12.01385 -11.79294 -11.55358 -11.39011 -11.25327 -11.13687 -11.07448 -11.00055 -10.78519 -10.63313 -10.53657 -10.36180 -10.14061 -9.65208 -9.62910 -8.96637 -8.58753 -7.33371 -5.80154 -3.17126 2.37318 2.84679 3.33720 3.36095 3.42574 3.96887 4.09013 4.26308 4.44878 4.55338 4.89686 5.00759 5.06910 5.12769 5.13706 5.17337 5.24850 5.30003 5.36119 5.47766 5.49885 5.57081 5.59392 5.65078 5.73311 5.76675 5.85507 5.91455 5.98593 6.00974 6.06475 6.15254 6.28557 6.31907 6.56580 6.74912 6.90927 7.32642 7.93731 7.98270 8.37885 9.15206 9.87269 10.05915 11.37988 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.005574 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.885805 B = 5021.873179 C = 5976.640873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.174 3.826 11 H 0.061 0.939 12 C -0.138 4.138 13 C -0.132 4.132 14 C 0.110 3.890 15 N -0.592 5.592 16 C 0.507 3.493 17 O -0.534 6.534 18 C 0.101 3.899 19 F -0.181 7.181 20 C -0.143 4.143 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.142 4.142 24 C 0.081 3.919 25 H 0.260 0.740 26 H 0.361 0.639 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.757 -5.743 4.771 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.064 3.936 11 H 0.079 0.921 12 C -0.179 4.179 13 C -0.171 4.171 14 C -0.012 4.012 15 N -0.324 5.324 16 C 0.292 3.708 17 O -0.412 6.412 18 C 0.080 3.920 19 F -0.162 7.162 20 C -0.181 4.181 21 C -0.161 4.161 22 C -0.159 4.159 23 C -0.180 4.180 24 C -0.042 4.042 25 H 0.070 0.930 26 H 0.193 0.807 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.740 -6.358 4.726 20.346 hybrid contribution 0.224 1.381 -0.172 1.410 sum 18.964 -4.977 4.554 20.128 Atomic orbital electron populations 1.69695 1.05116 1.25868 1.57275 1.24658 0.95202 0.97156 1.01878 0.86567 0.79232 0.85065 0.77745 1.21089 1.21695 1.20302 1.19033 0.80240 0.94781 1.43269 0.89136 1.42643 1.04105 1.01561 1.90332 1.20411 0.89673 0.89772 0.93724 0.92104 1.22257 1.00733 0.94863 0.99999 1.21916 0.95281 0.99221 1.00686 1.21741 0.98008 0.99065 0.82360 1.48117 1.50830 1.25788 1.07679 1.20676 0.78934 0.85348 0.85803 1.90649 1.45073 1.20561 1.84896 1.21772 0.79649 0.97172 0.93443 1.92914 1.35885 1.94341 1.93038 1.23048 0.99839 0.95634 0.99549 1.22529 1.00770 0.96970 0.95845 1.22344 0.97801 0.94543 1.01173 1.22749 0.98461 1.00017 0.96815 1.22559 0.92951 0.84637 1.04103 0.92997 0.80659 0.90949 0.92559 0.91656 0.91076 0.89335 0.91397 0.89621 0.88972 0.90594 0.90616 0.90809 0.91073 0.89707 0.87989 0.91588 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.90 13.97 55.49 0.78 -28.13 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.52 27.74 -169.99 -4.71 16.81 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 N -0.74 -16.92 4.93 -53.30 -0.26 -17.18 16 10 C 0.17 3.28 2.92 -67.81 -0.20 3.08 16 11 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 12 C -0.14 -2.30 5.47 -26.69 -0.15 -2.45 16 13 C -0.13 -1.81 6.08 -26.61 -0.16 -1.97 16 14 C 0.11 1.45 6.45 -3.56 -0.02 1.42 16 15 N -0.59 -8.63 2.98 -172.54 -0.51 -9.15 16 16 C 0.51 7.62 6.67 -10.98 -0.07 7.55 16 17 O -0.53 -8.99 14.65 5.55 0.08 -8.91 16 18 C 0.10 1.33 1.08 -90.65 -0.10 1.23 16 19 F -0.18 -2.84 14.50 2.25 0.03 -2.81 16 20 C -0.14 -1.53 5.26 -25.07 -0.13 -1.66 16 21 C -0.12 -1.08 6.91 -24.73 -0.17 -1.25 16 22 C -0.12 -1.06 6.83 -25.07 -0.17 -1.23 16 23 C -0.14 -1.61 6.25 -25.62 -0.16 -1.77 16 24 C 0.08 1.25 4.99 -3.71 -0.02 1.23 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.36 7.95 5.66 -40.82 -0.23 7.72 16 27 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.17 7.02 -51.93 -0.36 0.81 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 34 H 0.09 1.00 7.13 -51.93 -0.37 0.63 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.92 8.02 -51.93 -0.42 0.51 16 40 H 0.10 1.26 6.40 -51.93 -0.33 0.93 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.61 3.81 -51.93 -0.20 1.42 16 LS Contribution 326.07 15.07 4.91 4.91 Total: -1.00 -31.54 326.07 -7.85 -39.39 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.56 Total: 7.63 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.61 Total: -2.57 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.00 Total: -54.46 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.08 Total: -8.91 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.03 Total: -2.81 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.54 -7.85 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999556164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.655 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds