Wall clock time and date at job start Tue Mar 31 2020 06:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47196 * 269.99501 * 3 2 1 5 5 H 1.48497 * 109.46980 * 29.99880 * 3 2 1 6 6 H 1.48506 * 109.47019 * 150.00112 * 3 2 1 7 7 C 1.38816 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99922 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00160 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00111 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49708 * 325.06460 * 10 9 7 12 12 C 1.53039 * 109.52698 * 85.14642 * 10 9 7 13 13 C 1.53043 * 109.53978 * 181.33592 * 12 10 9 14 14 C 1.53194 * 109.30763 * 298.63403 * 13 12 10 15 15 N 1.47195 * 108.85855 * 54.64999 * 14 13 12 16 16 C 1.34784 * 120.81297 * 126.33416 * 15 14 13 17 17 O 1.21283 * 119.99920 * 355.29720 * 16 15 14 18 18 C 1.50702 * 119.99804 * 175.29764 * 16 15 14 19 19 F 1.39898 * 110.01969 * 55.22567 * 18 16 15 20 20 C 1.54271 * 110.02950 * 293.78252 * 18 16 15 21 21 C 1.54889 * 104.19532 * 217.10684 * 20 18 16 22 22 C 1.54897 * 102.74790 * 37.94478 * 21 20 18 23 23 C 1.53872 * 110.03130 * 176.62058 * 18 16 15 24 24 C 1.46923 * 118.55912 * 306.47631 * 15 14 13 25 25 H 0.97001 * 119.99867 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99962 * 0.02562 * 9 7 2 27 27 H 1.09008 * 109.45709 * 301.35249 * 12 10 9 28 28 H 1.09000 * 109.46103 * 61.32394 * 12 10 9 29 29 H 1.08991 * 109.49785 * 58.58147 * 13 12 10 30 30 H 1.09003 * 109.49761 * 178.68667 * 13 12 10 31 31 H 1.09002 * 109.58235 * 174.42758 * 14 13 12 32 32 H 1.09000 * 109.58875 * 294.70110 * 14 13 12 33 33 H 1.09000 * 110.48892 * 335.78445 * 20 18 16 34 34 H 1.08993 * 110.48282 * 98.43172 * 20 18 16 35 35 H 1.09000 * 110.75773 * 279.63533 * 21 20 18 36 36 H 1.08997 * 110.91518 * 156.32984 * 21 20 18 37 37 H 1.09002 * 110.48375 * 203.38233 * 22 21 20 38 38 H 1.08993 * 110.59894 * 80.79017 * 22 21 20 39 39 H 1.09004 * 110.03124 * 238.56787 * 23 18 16 40 40 H 1.09002 * 110.03214 * 359.94731 * 23 18 16 41 41 H 1.08992 * 109.58876 * 293.68462 * 24 15 14 42 42 H 1.09002 * 109.59269 * 173.39426 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0011 10 6 4.1119 -2.4710 0.0011 11 1 3.5641 -3.2074 0.5891 12 6 4.2626 -2.9747 -1.4362 13 6 4.9985 -4.3166 -1.4338 14 6 6.3974 -4.1260 -0.8391 15 7 6.2691 -3.5060 0.4897 16 6 6.8407 -4.0694 1.5725 17 8 7.3971 -5.1427 1.4752 18 6 6.7884 -3.3657 2.9041 19 9 5.4614 -3.0801 3.2431 20 6 7.6122 -2.0627 2.8459 21 6 8.2743 -1.9692 4.2431 22 6 8.6251 -3.4454 4.5545 23 6 7.4324 -4.2448 3.9905 24 6 5.5009 -2.2596 0.6120 25 1 -0.4850 0.8401 -0.0004 26 1 3.8645 -0.3622 0.0014 27 1 3.2758 -3.1025 -1.8814 28 1 4.8320 -2.2494 -2.0174 29 1 4.4424 -5.0354 -0.8323 30 1 5.0848 -4.6860 -2.4557 31 1 6.8888 -5.0943 -0.7437 32 1 6.9864 -3.4800 -1.4902 33 1 8.3722 -2.1263 2.0672 34 1 6.9600 -1.2064 2.6748 35 1 7.5718 -1.5759 4.9779 36 1 9.1756 -1.3575 4.2064 37 1 8.7120 -3.5980 5.6303 38 1 9.5489 -3.7340 4.0533 39 1 6.7113 -4.4482 4.7822 40 1 7.7820 -5.1807 3.5547 41 1 6.0158 -1.4594 0.0805 42 1 5.4006 -1.9938 1.6643 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999556164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:05 Heat of formation + Delta-G solvation = -94.839970 kcal Electronic energy + Delta-G solvation = -23991.791563 eV Core-core repulsion = 20499.240000 eV Total energy + Delta-G solvation = -3492.551563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.14469 -41.36124 -39.17872 -37.78979 -36.21220 -33.99141 -33.32548 -30.57737 -29.87886 -29.74954 -26.54529 -25.52810 -23.78556 -22.59956 -21.87504 -21.28312 -20.34722 -19.66735 -18.75744 -17.63981 -17.20138 -16.71928 -16.33785 -16.17409 -15.86377 -15.60069 -15.24075 -15.23459 -14.95696 -14.65995 -14.45666 -14.24773 -13.95065 -13.87731 -13.14423 -13.07977 -12.90644 -12.57782 -12.55538 -12.32336 -12.15532 -12.07037 -12.01088 -11.90565 -11.79145 -11.76507 -11.64209 -11.50452 -11.00553 -10.74723 -9.83709 -9.32656 -8.01432 -5.36940 1.19935 1.39556 1.44478 1.51539 1.72250 2.50237 2.92374 3.19623 3.29516 3.32472 3.54598 3.63007 3.85335 3.94110 4.02526 4.15161 4.21358 4.25834 4.29449 4.35158 4.41265 4.50470 4.62712 4.65830 4.74674 4.80118 4.83917 4.94195 4.96835 5.03432 5.07049 5.14363 5.17846 5.31464 5.37076 5.39932 5.47147 5.75896 6.13540 6.20945 6.80289 7.07221 7.79386 8.01651 9.20141 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.005574 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.885805 B = 5021.873179 C = 5976.640873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.062 4.062 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.243 1.243 7 C -0.231 4.231 8 H 0.049 0.951 9 N -0.743 5.743 10 C 0.169 3.831 11 H 0.028 0.972 12 C -0.130 4.130 13 C -0.123 4.123 14 C 0.109 3.891 15 N -0.593 5.593 16 C 0.503 3.497 17 O -0.555 6.555 18 C 0.091 3.909 19 F -0.200 7.200 20 C -0.141 4.141 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.143 4.143 24 C 0.093 3.907 25 H 0.258 0.742 26 H 0.369 0.631 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.206 -4.493 4.752 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.254 4.254 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.362 4.362 8 H 0.067 0.933 9 N -0.387 5.387 10 C 0.060 3.940 11 H 0.047 0.953 12 C -0.170 4.170 13 C -0.162 4.162 14 C -0.012 4.012 15 N -0.324 5.324 16 C 0.289 3.711 17 O -0.434 6.434 18 C 0.070 3.930 19 F -0.180 7.180 20 C -0.178 4.178 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.182 4.182 24 C -0.030 4.030 25 H 0.067 0.933 26 H 0.203 0.797 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 22.249 -5.144 4.704 23.315 hybrid contribution -0.910 0.821 -0.180 1.239 sum 21.339 -4.322 4.523 22.237 Atomic orbital electron populations 1.69897 1.07377 1.26774 1.59519 1.25530 0.96085 1.01432 1.02334 0.85389 0.78924 0.79136 0.78225 1.20251 1.22544 1.16752 1.18911 0.82409 0.93232 1.41616 0.93270 1.42519 1.02400 1.03386 1.90415 1.20549 0.90953 0.87461 0.95013 0.95343 1.22092 0.99937 0.96984 0.98030 1.21849 0.95166 0.96923 1.02236 1.21877 0.97552 0.99786 0.81971 1.48167 1.50384 1.25527 1.08342 1.21046 0.78498 0.85074 0.86469 1.90638 1.46096 1.21355 1.85332 1.22095 0.79143 0.98914 0.92891 1.92876 1.37523 1.94537 1.93106 1.23090 0.99645 0.93846 1.01256 1.22550 1.01500 0.97167 0.94407 1.22352 0.96661 0.94045 1.02164 1.22772 0.99496 0.99617 0.96268 1.22327 0.91002 0.85690 1.03967 0.93329 0.79704 0.93870 0.90887 0.93367 0.88261 0.89248 0.88658 0.88675 0.89088 0.90674 0.88356 0.89123 0.90348 0.89811 0.89365 0.89028 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.09 13.97 21.65 0.30 -62.79 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 3 Si 0.96 43.96 27.74 68.60 1.90 45.86 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.24 -9.73 6.52 99.48 0.65 -9.09 16 7 C -0.23 -13.04 10.41 84.04 0.88 -12.16 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 N -0.74 -33.40 4.93 -322.55 -1.59 -34.99 16 10 C 0.17 6.32 2.92 45.07 0.13 6.45 16 11 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 12 C -0.13 -4.23 5.47 30.62 0.17 -4.06 16 13 C -0.12 -3.18 6.08 30.67 0.19 -2.99 16 14 C 0.11 2.59 6.45 86.31 0.56 3.15 16 15 N -0.59 -16.22 2.98 -818.19 -2.44 -18.66 16 16 C 0.50 14.51 6.67 87.66 0.58 15.10 16 17 O -0.56 -18.20 14.65 -3.04 -0.04 -18.25 16 18 C 0.09 2.28 1.08 -10.81 -0.01 2.27 16 19 F -0.20 -6.20 14.50 44.97 0.65 -5.55 16 20 C -0.14 -2.64 5.26 31.67 0.17 -2.47 16 21 C -0.12 -1.70 6.91 31.89 0.22 -1.48 16 22 C -0.11 -1.70 6.83 31.67 0.22 -1.49 16 23 C -0.14 -3.09 6.25 31.32 0.20 -2.90 16 24 C 0.09 2.72 4.99 86.37 0.43 3.15 16 25 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 26 H 0.37 15.35 5.66 -92.71 -0.52 14.83 16 27 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.09 2.17 7.02 -2.39 -0.02 2.16 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 1.60 7.85 -2.39 -0.02 1.58 16 34 H 0.09 1.74 7.13 -2.39 -0.02 1.72 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.78 8.02 -2.39 -0.02 1.76 16 40 H 0.09 2.15 6.40 -2.39 -0.02 2.13 16 41 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.10 2.98 3.81 -2.39 -0.01 2.97 16 Total: -1.00 -70.72 326.07 3.40 -67.31 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.43 Total: 27.66 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.19 Total: -0.61 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -3.73 Total: -116.43 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.04 Total: -18.25 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.65 Total: -5.55 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.86 kcal Total: -70.72 3.40 -67.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999556164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.526 kcal (2) G-P(sol) polarization free energy of solvation -70.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds