Wall clock time and date at job start Tue Mar 31 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00176 * 2 1 4 4 H 1.48508 * 109.47213 * 240.00338 * 3 2 1 5 5 H 1.48493 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47188 * 120.00249 * 3 2 1 7 7 C 1.38815 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99623 * 197.36138 * 7 2 1 9 9 N 1.36937 * 120.00404 * 17.36243 * 7 2 1 10 10 C 1.46923 * 120.62709 * 27.66119 * 9 7 2 11 11 C 1.53191 * 108.77072 * 126.41500 * 10 9 7 12 12 C 1.53041 * 109.33945 * 54.62338 * 11 10 9 13 13 C 1.53043 * 109.53584 * 298.67933 * 12 11 10 14 14 H 1.09000 * 109.49891 * 301.35053 * 13 12 11 15 15 N 1.46504 * 109.49701 * 181.28717 * 13 12 11 16 16 C 1.34773 * 120.00107 * 155.06607 * 15 13 12 17 17 O 1.21286 * 119.99891 * 359.97438 * 16 15 13 18 18 C 1.50694 * 120.00426 * 179.97438 * 16 15 13 19 19 F 1.39903 * 110.01455 * 311.39510 * 18 16 15 20 20 C 1.53866 * 110.03837 * 189.99919 * 18 16 15 21 21 C 1.54269 * 106.64296 * 240.64521 * 20 18 16 22 22 C 1.54960 * 104.15615 * 336.44245 * 21 20 18 23 23 C 1.54270 * 110.07213 * 72.80707 * 18 16 15 24 24 C 1.46921 * 120.62971 * 207.68893 * 9 7 2 25 25 H 0.96999 * 119.99831 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.59008 * 246.20082 * 10 9 7 27 27 H 1.08997 * 109.58688 * 6.63309 * 10 9 7 28 28 H 1.09008 * 109.49937 * 174.58249 * 11 10 9 29 29 H 1.08994 * 109.50044 * 294.65211 * 11 10 9 30 30 H 1.08996 * 109.48455 * 178.64624 * 12 11 10 31 31 H 1.08994 * 109.43381 * 58.68405 * 12 11 10 32 32 H 0.96993 * 119.99654 * 335.05875 * 15 13 12 33 33 H 1.09002 * 110.03137 * 359.95046 * 20 18 16 34 34 H 1.09000 * 110.03604 * 121.33357 * 20 18 16 35 35 H 1.08998 * 110.48613 * 95.09197 * 21 20 18 36 36 H 1.09002 * 110.48202 * 217.73235 * 21 20 18 37 37 H 1.08998 * 110.72263 * 279.57245 * 22 21 20 38 38 H 1.09000 * 110.92215 * 156.29809 * 22 21 20 39 39 H 1.09000 * 110.48508 * 261.60368 * 23 18 16 40 40 H 1.09001 * 110.48381 * 24.10684 * 23 18 16 41 41 H 1.09008 * 109.58795 * 113.79758 * 24 9 7 42 42 H 1.08997 * 109.70777 * 353.44136 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2786 9 7 1.3723 -2.3610 -0.3549 10 6 0.2277 -2.3338 -1.2756 11 6 0.5005 -3.3033 -2.4300 12 6 0.8187 -4.6890 -1.8636 13 6 2.0741 -4.6095 -0.9918 14 1 2.9082 -4.2395 -1.5880 15 7 2.3956 -5.9421 -0.4750 16 6 3.6622 -6.2418 -0.1253 17 8 4.5360 -5.4083 -0.2389 18 6 3.9929 -7.6123 0.4069 19 9 3.0855 -7.9680 1.4106 20 6 5.4275 -7.6299 0.9629 21 6 6.2074 -8.6762 0.1401 22 6 5.1094 -9.6221 -0.4084 23 6 3.9502 -8.6483 -0.7354 24 6 1.8192 -3.6548 0.1788 25 1 -0.4850 0.8400 0.0004 26 1 -0.6745 -2.6405 -0.7463 27 1 0.0985 -1.3253 -1.6683 28 1 -0.3805 -3.3652 -3.0691 29 1 1.3487 -2.9451 -3.0132 30 1 0.9896 -5.3864 -2.6836 31 1 -0.0205 -5.0359 -1.2609 32 1 1.6968 -6.6087 -0.3844 33 1 5.8849 -6.6474 0.8470 34 1 5.4168 -7.9148 2.0150 35 1 6.7414 -8.1958 -0.6798 36 1 6.9002 -9.2243 0.7786 37 1 4.8061 -10.3424 0.3514 38 1 5.4502 -10.1332 -1.3088 39 1 2.9968 -9.1765 -0.7359 40 1 4.1168 -8.1629 -1.6970 41 1 1.0468 -4.0692 0.8268 42 1 2.7394 -3.5199 0.7472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007710970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:26 Heat of formation + Delta-G solvation = -79.722932 kcal Electronic energy + Delta-G solvation = -23442.976182 eV Core-core repulsion = 19951.080143 eV Total energy + Delta-G solvation = -3491.896039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.96038 -39.86362 -37.77182 -36.72743 -34.37968 -32.45250 -30.47368 -29.63741 -29.08299 -27.97103 -25.28317 -23.10026 -22.10864 -21.34210 -21.05384 -19.88699 -19.23996 -17.87877 -16.81101 -16.46499 -15.73235 -15.50708 -14.90781 -14.62154 -14.52461 -14.20868 -13.92208 -13.66754 -13.51737 -13.30102 -13.04462 -12.44868 -12.39141 -12.08209 -11.87219 -11.76578 -11.48565 -11.37719 -11.10060 -11.05580 -10.89457 -10.81359 -10.76488 -10.27365 -10.24755 -9.92587 -9.90496 -9.65286 -9.45624 -8.87675 -8.39873 -6.67001 -5.77296 -3.19408 2.55972 3.13286 3.42233 3.46693 3.49716 4.01189 4.09134 4.37906 4.48361 4.57874 4.93913 5.01411 5.12818 5.20241 5.27068 5.31125 5.37806 5.49354 5.52869 5.60012 5.61150 5.70118 5.75340 5.87750 5.99589 6.05032 6.08515 6.13576 6.22568 6.50745 6.59478 6.63568 6.67567 6.82480 6.97118 7.35699 7.61685 7.64773 7.83828 8.24878 8.46978 9.23165 9.85347 10.41077 11.31508 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.004108 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.703757 B = 6813.682413 C = 7372.436286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.124 3.876 14 H 0.087 0.913 15 N -0.710 5.710 16 C 0.499 3.501 17 O -0.519 6.519 18 C 0.100 3.900 19 F -0.194 7.194 20 C -0.143 4.143 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.140 4.140 24 C 0.142 3.858 25 H 0.254 0.746 26 H 0.019 0.981 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.398 0.602 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.018 0.982 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.819 -19.440 -2.897 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.019 3.981 14 H 0.105 0.895 15 N -0.360 5.360 16 C 0.282 3.718 17 O -0.395 6.395 18 C 0.079 3.921 19 F -0.175 7.175 20 C -0.181 4.181 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.178 4.178 24 C 0.014 3.986 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.231 0.769 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.036 0.964 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.302 -18.644 -2.937 19.898 hybrid contribution -0.155 0.485 0.193 0.544 sum 6.147 -18.159 -2.744 19.366 Atomic orbital electron populations 1.70032 1.05247 1.25619 1.53954 1.25018 0.95291 0.98391 1.00839 0.86343 0.78905 0.83157 0.78249 1.20960 1.21622 1.20836 1.19188 0.92818 0.84715 1.41457 0.91598 1.43992 1.35624 1.00988 1.50399 1.20850 0.88565 0.98594 0.87848 1.22182 1.00464 0.95109 1.00157 1.21679 0.96705 0.98673 0.98226 1.21833 0.97966 0.81018 0.97316 0.89464 1.46120 1.08923 1.16075 1.64898 1.20589 0.83441 0.88894 0.78854 1.90733 1.46790 1.48517 1.53435 1.21874 0.89914 0.93153 0.87199 1.92905 1.69136 1.92895 1.62520 1.22749 0.91820 1.03020 1.00541 1.22358 0.97565 0.96244 0.99729 1.22528 0.94798 0.97344 1.01390 1.22951 1.01144 0.96182 0.97482 1.21170 0.98025 0.86841 0.92524 0.93596 0.96280 0.89199 0.92647 0.92410 0.93058 0.92148 0.76851 0.87813 0.89867 0.90879 0.90843 0.90854 0.90661 0.89468 0.89447 0.96388 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 11.19 55.49 0.62 -25.85 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 22.20 29.59 -169.99 -5.03 17.17 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.25 -7.18 9.59 -15.06 -0.14 -7.33 16 8 H 0.07 1.89 7.89 -52.48 -0.41 1.47 16 9 N -0.59 -15.15 2.99 -172.32 -0.52 -15.66 16 10 C 0.17 3.97 5.31 -3.71 -0.02 3.96 16 11 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 12 C -0.11 -1.85 5.36 -26.69 -0.14 -2.00 16 13 C 0.12 2.25 2.60 -67.81 -0.18 2.07 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 N -0.71 -10.61 5.05 -53.69 -0.27 -10.88 16 16 C 0.50 7.81 6.67 -10.99 -0.07 7.73 16 17 O -0.52 -10.05 14.93 5.55 0.08 -9.97 16 18 C 0.10 1.22 1.49 -90.66 -0.13 1.08 16 19 F -0.19 -2.52 16.71 2.25 0.04 -2.49 16 20 C -0.14 -1.62 6.23 -25.62 -0.16 -1.78 16 21 C -0.12 -1.04 6.84 -25.03 -0.17 -1.21 16 22 C -0.12 -0.94 6.91 -24.70 -0.17 -1.11 16 23 C -0.14 -1.28 6.14 -25.07 -0.15 -1.43 16 24 C 0.14 3.18 6.09 -3.71 -0.02 3.16 16 25 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 28 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.40 4.86 8.55 -40.82 -0.35 4.51 16 33 H 0.10 1.39 6.45 -51.93 -0.33 1.05 16 34 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 40 H 0.09 0.81 7.85 -51.93 -0.41 0.40 16 41 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 42 H 0.06 1.38 7.94 -51.93 -0.41 0.97 16 LS Contribution 334.13 15.07 5.04 5.04 Total: -1.00 -31.54 334.13 -8.48 -40.03 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.82 Total: 2.22 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.62 Total: 0.39 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.17 Total: -52.39 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.54 -8.48 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007710970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.696 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds