Wall clock time and date at job start Tue Mar 31 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00176 * 2 1 4 4 H 1.48508 * 109.47213 * 240.00338 * 3 2 1 5 5 H 1.48493 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47188 * 120.00249 * 3 2 1 7 7 C 1.38815 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99623 * 197.36138 * 7 2 1 9 9 N 1.36937 * 120.00404 * 17.36243 * 7 2 1 10 10 C 1.46923 * 120.62709 * 27.66119 * 9 7 2 11 11 C 1.53191 * 108.77072 * 126.41500 * 10 9 7 12 12 C 1.53041 * 109.33945 * 54.62338 * 11 10 9 13 13 C 1.53043 * 109.53584 * 298.67933 * 12 11 10 14 14 H 1.09000 * 109.49891 * 301.35053 * 13 12 11 15 15 N 1.46504 * 109.49701 * 181.28717 * 13 12 11 16 16 C 1.34773 * 120.00107 * 155.06607 * 15 13 12 17 17 O 1.21286 * 119.99891 * 359.97438 * 16 15 13 18 18 C 1.50694 * 120.00426 * 179.97438 * 16 15 13 19 19 F 1.39903 * 110.01455 * 311.39510 * 18 16 15 20 20 C 1.53866 * 110.03837 * 189.99919 * 18 16 15 21 21 C 1.54269 * 106.64296 * 240.64521 * 20 18 16 22 22 C 1.54960 * 104.15615 * 336.44245 * 21 20 18 23 23 C 1.54270 * 110.07213 * 72.80707 * 18 16 15 24 24 C 1.46921 * 120.62971 * 207.68893 * 9 7 2 25 25 H 0.96999 * 119.99831 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.59008 * 246.20082 * 10 9 7 27 27 H 1.08997 * 109.58688 * 6.63309 * 10 9 7 28 28 H 1.09008 * 109.49937 * 174.58249 * 11 10 9 29 29 H 1.08994 * 109.50044 * 294.65211 * 11 10 9 30 30 H 1.08996 * 109.48455 * 178.64624 * 12 11 10 31 31 H 1.08994 * 109.43381 * 58.68405 * 12 11 10 32 32 H 0.96993 * 119.99654 * 335.05875 * 15 13 12 33 33 H 1.09002 * 110.03137 * 359.95046 * 20 18 16 34 34 H 1.09000 * 110.03604 * 121.33357 * 20 18 16 35 35 H 1.08998 * 110.48613 * 95.09197 * 21 20 18 36 36 H 1.09002 * 110.48202 * 217.73235 * 21 20 18 37 37 H 1.08998 * 110.72263 * 279.57245 * 22 21 20 38 38 H 1.09000 * 110.92215 * 156.29809 * 22 21 20 39 39 H 1.09000 * 110.48508 * 261.60368 * 23 18 16 40 40 H 1.09001 * 110.48381 * 24.10684 * 23 18 16 41 41 H 1.09008 * 109.58795 * 113.79758 * 24 9 7 42 42 H 1.08997 * 109.70777 * 353.44136 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2786 9 7 1.3723 -2.3610 -0.3549 10 6 0.2277 -2.3338 -1.2756 11 6 0.5005 -3.3033 -2.4300 12 6 0.8187 -4.6890 -1.8636 13 6 2.0741 -4.6095 -0.9918 14 1 2.9082 -4.2395 -1.5880 15 7 2.3956 -5.9421 -0.4750 16 6 3.6622 -6.2418 -0.1253 17 8 4.5360 -5.4083 -0.2389 18 6 3.9929 -7.6123 0.4069 19 9 3.0855 -7.9680 1.4106 20 6 5.4275 -7.6299 0.9629 21 6 6.2074 -8.6762 0.1401 22 6 5.1094 -9.6221 -0.4084 23 6 3.9502 -8.6483 -0.7354 24 6 1.8192 -3.6548 0.1788 25 1 -0.4850 0.8400 0.0004 26 1 -0.6745 -2.6405 -0.7463 27 1 0.0985 -1.3253 -1.6683 28 1 -0.3805 -3.3652 -3.0691 29 1 1.3487 -2.9451 -3.0132 30 1 0.9896 -5.3864 -2.6836 31 1 -0.0205 -5.0359 -1.2609 32 1 1.6968 -6.6087 -0.3844 33 1 5.8849 -6.6474 0.8470 34 1 5.4168 -7.9148 2.0150 35 1 6.7414 -8.1958 -0.6798 36 1 6.9002 -9.2243 0.7786 37 1 4.8061 -10.3424 0.3514 38 1 5.4502 -10.1332 -1.3088 39 1 2.9968 -9.1765 -0.7359 40 1 4.1168 -8.1629 -1.6970 41 1 1.0468 -4.0692 0.8268 42 1 2.7394 -3.5199 0.7472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007710970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:26 Heat of formation + Delta-G solvation = -99.631444 kcal Electronic energy + Delta-G solvation = -23443.839480 eV Core-core repulsion = 19951.080143 eV Total energy + Delta-G solvation = -3492.759337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.97287 -41.16933 -39.23796 -37.76386 -36.03227 -34.21366 -32.38262 -30.98997 -29.85594 -29.16524 -27.29539 -24.45281 -23.90903 -22.62158 -21.83143 -21.33082 -20.58302 -19.05730 -18.75230 -17.55246 -17.10537 -16.71784 -16.42972 -16.11868 -15.76514 -15.59153 -15.20524 -15.17405 -14.84750 -14.58063 -14.27632 -14.11610 -14.05472 -13.48342 -13.08899 -13.04628 -12.75286 -12.62034 -12.54677 -12.19499 -12.16208 -12.13428 -12.00191 -11.90177 -11.76497 -11.60164 -11.48231 -11.36166 -10.80623 -10.64546 -10.22763 -8.73856 -7.93559 -5.39455 1.30846 1.43268 1.45280 1.53014 1.90269 2.47895 3.10469 3.20562 3.26521 3.42531 3.59999 3.72148 3.84144 4.05823 4.20446 4.21705 4.27818 4.37177 4.41426 4.43404 4.51553 4.66689 4.75327 4.81819 4.87564 4.95759 4.98182 5.07237 5.08892 5.10338 5.16960 5.20485 5.23191 5.38678 5.39616 5.50586 5.59702 5.73174 6.32883 6.38433 7.03412 7.09972 7.78338 8.28667 9.12155 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.004108 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.703757 B = 6813.682413 C = 7372.436286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.042 4.042 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.273 4.273 8 H 0.053 0.947 9 N -0.607 5.607 10 C 0.171 3.829 11 C -0.129 4.129 12 C -0.104 4.104 13 C 0.140 3.860 14 H 0.063 0.937 15 N -0.699 5.699 16 C 0.494 3.506 17 O -0.563 6.563 18 C 0.103 3.897 19 F -0.198 7.198 20 C -0.148 4.148 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.135 4.135 24 C 0.144 3.856 25 H 0.253 0.747 26 H 0.004 0.996 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.415 0.585 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.018 0.982 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.795 -21.945 -3.988 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.238 4.238 3 Si 0.794 3.206 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.403 4.403 8 H 0.070 0.930 9 N -0.330 5.330 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.142 4.142 13 C 0.034 3.966 14 H 0.081 0.919 15 N -0.349 5.349 16 C 0.279 3.721 17 O -0.441 6.441 18 C 0.081 3.919 19 F -0.178 7.178 20 C -0.187 4.187 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.173 4.173 24 C 0.017 3.983 25 H 0.062 0.938 26 H 0.022 0.978 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.252 0.748 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.035 0.965 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.261 -21.205 -4.030 22.475 hybrid contribution -0.141 1.276 0.616 1.425 sum 6.120 -19.929 -3.413 21.125 Atomic orbital electron populations 1.70163 1.06418 1.26189 1.54618 1.25733 0.96125 1.01250 1.00674 0.85359 0.77732 0.79189 0.78284 1.20389 1.21090 1.20496 1.19373 0.92631 0.86407 1.41928 0.92954 1.44220 1.36087 1.01381 1.51361 1.20744 0.87410 0.98326 0.88966 1.22016 1.01541 0.95082 0.98218 1.21620 0.95628 0.97882 0.99089 1.21347 0.98365 0.81560 0.95359 0.91919 1.45930 1.09486 1.15096 1.64424 1.21336 0.82912 0.90005 0.77884 1.90720 1.48080 1.50261 1.55082 1.21960 0.89971 0.91686 0.88239 1.92900 1.69356 1.92702 1.62857 1.22792 0.91654 1.02617 1.01590 1.22373 0.97960 0.95734 0.99501 1.22551 0.93384 0.96821 1.02582 1.23013 1.03030 0.95499 0.95787 1.21195 0.96306 0.86722 0.94083 0.93753 0.97778 0.92534 0.89483 0.93226 0.89056 0.90726 0.74775 0.90625 0.89288 0.91281 0.89039 0.89776 0.88581 0.87513 0.89507 0.96457 0.95398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 11.19 21.65 0.24 -55.47 16 2 C -0.04 -2.42 4.91 84.86 0.42 -2.00 16 3 Si 0.97 46.60 29.59 68.60 2.03 48.63 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.27 -16.16 9.59 84.03 0.81 -15.35 16 8 H 0.05 3.15 7.89 -2.91 -0.02 3.13 16 9 N -0.61 -32.32 2.99 -699.11 -2.09 -34.42 16 10 C 0.17 8.25 5.31 86.36 0.46 8.71 16 11 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 12 C -0.10 -3.09 5.36 30.62 0.16 -2.93 16 13 C 0.14 5.03 2.60 45.07 0.12 5.14 16 14 H 0.06 2.61 7.58 -2.39 -0.02 2.59 16 15 N -0.70 -20.06 5.05 -442.16 -2.23 -22.29 16 16 C 0.49 15.35 6.67 87.66 0.58 15.93 16 17 O -0.56 -22.59 14.93 -3.05 -0.05 -22.63 16 18 C 0.10 2.37 1.49 -10.82 -0.02 2.35 16 19 F -0.20 -4.79 16.71 44.97 0.75 -4.04 16 20 C -0.15 -3.26 6.23 31.32 0.20 -3.07 16 21 C -0.12 -1.78 6.84 31.69 0.22 -1.56 16 22 C -0.12 -1.36 6.91 31.91 0.22 -1.14 16 23 C -0.14 -2.07 6.14 31.67 0.19 -1.88 16 24 C 0.14 6.63 6.09 86.36 0.53 7.16 16 25 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.06 3.09 6.04 -2.39 -0.01 3.08 16 28 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.42 9.09 8.55 -92.71 -0.79 8.30 16 33 H 0.08 2.11 6.45 -2.39 -0.02 2.09 16 34 H 0.09 1.80 8.02 -2.39 -0.02 1.78 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.11 1.25 8.11 -2.39 -0.02 1.23 16 40 H 0.09 1.37 7.85 -2.39 -0.02 1.35 16 41 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.03 1.40 7.94 -2.39 -0.02 1.39 16 Total: -1.00 -71.84 334.13 2.94 -68.91 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.22 Total: 14.39 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 4.07 Total: 6.93 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -4.09 Total: -112.18 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.75 Total: -4.04 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -71.84 2.94 -68.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007710970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.722 kcal (2) G-P(sol) polarization free energy of solvation -71.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds