Wall clock time and date at job start Tue Mar 31 2020 06:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86793 * 119.99800 * 2 1 4 4 H 1.48500 * 109.47325 * 269.99926 * 3 2 1 5 5 H 1.48504 * 109.47419 * 30.00234 * 3 2 1 6 6 H 1.48499 * 109.46947 * 150.00243 * 3 2 1 7 7 C 1.38807 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99501 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00725 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00479 * 180.02562 * 9 7 2 11 11 C 1.53787 * 113.61745 * 154.99632 * 10 9 7 12 12 C 1.53784 * 87.07866 * 89.11636 * 11 10 9 13 13 C 1.53005 * 113.61416 * 139.98338 * 12 11 10 14 14 N 1.46496 * 109.47033 * 175.00103 * 13 12 11 15 15 C 1.34778 * 119.99947 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00098 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00279 * 179.97438 * 15 14 13 18 18 F 1.39900 * 110.67129 * 313.23322 * 17 15 14 19 19 C 1.54891 * 110.75653 * 76.66470 * 17 15 14 20 20 C 1.54267 * 104.19324 * 156.25978 * 19 17 15 21 21 C 1.53876 * 106.59870 * 336.39035 * 20 19 17 22 22 C 1.54261 * 106.59990 * 0.02562 * 21 20 19 23 23 C 1.53781 * 113.61534 * 252.49569 * 10 9 7 24 24 H 0.96993 * 119.99839 * 359.97438 * 1 2 3 25 25 H 0.97008 * 119.99567 * 359.97438 * 9 7 2 26 26 H 1.08999 * 112.84982 * 23.79917 * 10 9 7 27 27 H 1.08995 * 113.61302 * 334.56817 * 11 10 9 28 28 H 1.08995 * 113.61614 * 203.66028 * 11 10 9 29 29 H 1.08999 * 113.61549 * 270.79780 * 12 11 10 30 30 H 1.08996 * 109.47048 * 54.99945 * 13 12 11 31 31 H 1.09001 * 109.46841 * 294.99991 * 13 12 11 32 32 H 0.97000 * 120.00581 * 359.97438 * 14 13 12 33 33 H 1.09004 * 110.48613 * 37.58350 * 19 17 15 34 34 H 1.08994 * 110.48745 * 274.93768 * 19 17 15 35 35 H 1.08995 * 110.03032 * 217.10762 * 20 19 17 36 36 H 1.08998 * 110.03405 * 95.67701 * 20 19 17 37 37 H 1.08998 * 110.02768 * 119.28860 * 21 20 19 38 38 H 1.08994 * 110.03051 * 240.71540 * 21 20 19 39 39 H 1.09000 * 110.48928 * 142.28640 * 22 21 20 40 40 H 1.08999 * 110.48469 * 264.93049 * 22 21 20 41 41 H 1.08998 * 113.61708 * 156.33570 * 23 10 9 42 42 H 1.09001 * 113.61265 * 25.42769 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.2597 -4.8291 0.5928 12 6 0.7211 -5.0787 -0.8258 13 6 0.6205 -6.5611 -1.1911 14 7 -0.0104 -6.6982 -2.5061 15 6 -0.2048 -7.9221 -3.0360 16 8 0.1430 -8.9100 -2.4243 17 6 -0.8543 -8.0633 -4.3885 18 9 -1.9979 -7.2619 -4.4732 19 6 0.1481 -7.7174 -5.5176 20 6 -0.4009 -8.4622 -6.7520 21 6 -1.2576 -9.6241 -6.2193 22 6 -1.1999 -9.5445 -4.6798 23 6 2.0001 -4.4015 -1.3458 24 1 -0.4849 0.8400 0.0004 25 1 0.3556 -2.3880 -0.0016 26 1 3.0653 -3.5640 0.4046 27 1 0.4929 -4.5195 1.3029 28 1 1.8863 -5.6371 0.9704 29 1 -0.1903 -4.5247 -1.0506 30 1 0.0195 -7.0794 -0.4440 31 1 1.6192 -6.9967 -1.2200 32 1 -0.2889 -5.9082 -2.9953 33 1 1.1453 -8.0787 -5.2663 34 1 0.1647 -6.6424 -5.6968 35 1 0.4231 -8.8498 -7.3510 36 1 -1.0147 -7.7898 -7.3513 37 1 -2.2872 -9.5156 -6.5602 38 1 -0.8494 -10.5756 -6.5599 39 1 -2.1667 -9.8031 -4.2479 40 1 -0.4203 -10.2007 -4.2929 41 1 2.8290 -5.0927 -1.4981 42 1 1.8309 -3.7469 -2.2007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100468551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:19 Heat of formation + Delta-G solvation = -70.763370 kcal Electronic energy + Delta-G solvation = -22424.230378 eV Core-core repulsion = 18932.722855 eV Total energy + Delta-G solvation = -3491.507523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.06546 -39.97562 -38.64093 -37.15314 -34.76682 -33.23751 -30.38967 -29.41411 -29.20412 -27.14063 -25.09226 -23.83518 -22.58496 -21.60496 -20.83844 -20.14141 -18.60490 -17.95959 -17.25772 -16.67973 -16.06663 -15.59790 -15.22893 -15.06183 -14.85838 -14.59417 -14.12853 -13.87225 -13.70461 -13.24610 -13.14268 -12.92041 -12.40721 -12.28405 -12.01457 -11.95248 -11.63902 -11.58601 -11.44749 -11.16570 -11.05619 -10.85866 -10.72493 -10.52229 -10.21177 -10.11823 -9.78603 -9.71554 -9.49079 -9.10562 -8.90881 -7.02697 -5.82803 -3.12137 2.29638 2.91672 3.40336 3.45741 3.47409 3.84605 3.96014 4.25105 4.37768 4.53746 4.85432 4.92189 4.96799 5.01310 5.03668 5.05365 5.20039 5.21683 5.42724 5.42923 5.54007 5.57940 5.62009 5.65176 5.77323 5.81684 5.86498 5.91150 5.95241 6.06306 6.17342 6.30815 6.34326 6.55243 6.71185 6.85995 7.01124 7.33517 7.66733 7.96364 8.36294 9.46919 10.04249 10.38374 11.39596 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026358 B = 0.003068 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.058274 B = 9122.972389 C = 9645.184391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.148 4.148 12 C -0.121 4.121 13 C 0.129 3.871 14 N -0.712 5.712 15 C 0.504 3.496 16 O -0.531 6.531 17 C 0.095 3.905 18 F -0.188 7.188 19 C -0.138 4.138 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.169 4.169 24 H 0.256 0.744 25 H 0.385 0.615 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.406 0.594 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.171 -18.586 -11.285 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.187 4.187 12 C -0.139 4.139 13 C 0.006 3.994 14 N -0.362 5.362 15 C 0.287 3.713 16 O -0.408 6.408 17 C 0.073 3.927 18 F -0.168 7.168 19 C -0.176 4.176 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.166 4.166 23 C -0.210 4.210 24 H 0.066 0.934 25 H 0.219 0.781 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.241 0.759 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.827 -19.076 -10.798 21.936 hybrid contribution -0.207 1.419 -0.289 1.463 sum -1.034 -17.657 -11.087 20.875 Atomic orbital electron populations 1.69664 1.05139 1.25824 1.57394 1.24771 0.95549 0.97813 1.02743 0.86165 0.78666 0.83662 0.77540 1.21668 1.21738 1.20690 1.19285 0.91115 0.83960 1.43046 0.90992 1.42177 1.05702 0.99442 1.87125 1.21046 0.95117 0.85592 0.92703 1.23450 1.00516 0.99721 0.95052 1.22729 0.99702 0.92761 0.98742 1.21567 0.97636 0.97364 0.82837 1.46088 1.60922 1.08070 1.21103 1.20578 0.79824 0.83936 0.86974 1.90710 1.51369 1.37435 1.61247 1.22108 0.83859 0.92624 0.94108 1.92903 1.51654 1.75118 1.97155 1.22940 0.98524 1.02538 0.93564 1.22132 0.99739 0.97155 0.97038 1.22162 1.00709 0.99018 0.94392 1.22797 1.04180 0.92925 0.96698 1.23900 0.95572 0.99648 1.01864 0.93409 0.78094 0.91925 0.91263 0.90434 0.88786 0.91601 0.91303 0.75879 0.89200 0.89407 0.90850 0.90981 0.91184 0.90895 0.89990 0.88257 0.91392 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.71 -17.25 5.31 -52.64 -0.28 -17.53 16 10 C 0.17 3.22 4.56 -67.12 -0.31 2.92 16 11 C -0.15 -2.33 7.39 -25.91 -0.19 -2.53 16 12 C -0.12 -1.79 3.63 -89.80 -0.33 -2.11 16 13 C 0.13 1.71 5.51 -4.04 -0.02 1.69 16 14 N -0.71 -8.97 5.53 -60.29 -0.33 -9.30 16 15 C 0.50 6.62 6.90 -10.98 -0.08 6.54 16 16 O -0.53 -8.42 15.69 5.56 0.09 -8.34 16 17 C 0.09 1.02 1.37 -89.79 -0.12 0.89 16 18 F -0.19 -2.25 16.88 2.25 0.04 -2.21 16 19 C -0.14 -1.18 6.07 -25.07 -0.15 -1.34 16 20 C -0.12 -0.88 6.80 -25.61 -0.17 -1.05 16 21 C -0.13 -0.91 6.80 -25.61 -0.17 -1.08 16 22 C -0.13 -1.21 5.80 -25.09 -0.15 -1.35 16 23 C -0.17 -2.75 7.43 -25.92 -0.19 -2.94 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.39 9.97 7.90 -40.82 -0.32 9.64 16 26 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 32 H 0.41 4.71 8.40 -40.82 -0.34 4.37 16 33 H 0.09 0.75 8.04 -51.93 -0.42 0.33 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.99 7.30 -51.93 -0.38 0.61 16 41 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -30.77 346.20 -8.59 -39.37 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.89 Total: 10.33 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.13 Total: -7.59 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 0.11 Total: -53.82 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.77 -8.59 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100468551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.396 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds