Wall clock time and date at job start Tue Mar 31 2020 06:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86793 * 119.99800 * 2 1 4 4 H 1.48500 * 109.47325 * 269.99926 * 3 2 1 5 5 H 1.48504 * 109.47419 * 30.00234 * 3 2 1 6 6 H 1.48499 * 109.46947 * 150.00243 * 3 2 1 7 7 C 1.38807 * 119.99598 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99501 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00725 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00479 * 180.02562 * 9 7 2 11 11 C 1.53787 * 113.61745 * 154.99632 * 10 9 7 12 12 C 1.53784 * 87.07866 * 89.11636 * 11 10 9 13 13 C 1.53005 * 113.61416 * 139.98338 * 12 11 10 14 14 N 1.46496 * 109.47033 * 175.00103 * 13 12 11 15 15 C 1.34778 * 119.99947 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00098 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00279 * 179.97438 * 15 14 13 18 18 F 1.39900 * 110.67129 * 313.23322 * 17 15 14 19 19 C 1.54891 * 110.75653 * 76.66470 * 17 15 14 20 20 C 1.54267 * 104.19324 * 156.25978 * 19 17 15 21 21 C 1.53876 * 106.59870 * 336.39035 * 20 19 17 22 22 C 1.54261 * 106.59990 * 0.02562 * 21 20 19 23 23 C 1.53781 * 113.61534 * 252.49569 * 10 9 7 24 24 H 0.96993 * 119.99839 * 359.97438 * 1 2 3 25 25 H 0.97008 * 119.99567 * 359.97438 * 9 7 2 26 26 H 1.08999 * 112.84982 * 23.79917 * 10 9 7 27 27 H 1.08995 * 113.61302 * 334.56817 * 11 10 9 28 28 H 1.08995 * 113.61614 * 203.66028 * 11 10 9 29 29 H 1.08999 * 113.61549 * 270.79780 * 12 11 10 30 30 H 1.08996 * 109.47048 * 54.99945 * 13 12 11 31 31 H 1.09001 * 109.46841 * 294.99991 * 13 12 11 32 32 H 0.97000 * 120.00581 * 359.97438 * 14 13 12 33 33 H 1.09004 * 110.48613 * 37.58350 * 19 17 15 34 34 H 1.08994 * 110.48745 * 274.93768 * 19 17 15 35 35 H 1.08995 * 110.03032 * 217.10762 * 20 19 17 36 36 H 1.08998 * 110.03405 * 95.67701 * 20 19 17 37 37 H 1.08998 * 110.02768 * 119.28860 * 21 20 19 38 38 H 1.08994 * 110.03051 * 240.71540 * 21 20 19 39 39 H 1.09000 * 110.48928 * 142.28640 * 22 21 20 40 40 H 1.08999 * 110.48469 * 264.93049 * 22 21 20 41 41 H 1.08998 * 113.61708 * 156.33570 * 23 10 9 42 42 H 1.09001 * 113.61265 * 25.42769 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.2597 -4.8291 0.5928 12 6 0.7211 -5.0787 -0.8258 13 6 0.6205 -6.5611 -1.1911 14 7 -0.0104 -6.6982 -2.5061 15 6 -0.2048 -7.9221 -3.0360 16 8 0.1430 -8.9100 -2.4243 17 6 -0.8543 -8.0633 -4.3885 18 9 -1.9979 -7.2619 -4.4732 19 6 0.1481 -7.7174 -5.5176 20 6 -0.4009 -8.4622 -6.7520 21 6 -1.2576 -9.6241 -6.2193 22 6 -1.1999 -9.5445 -4.6798 23 6 2.0001 -4.4015 -1.3458 24 1 -0.4849 0.8400 0.0004 25 1 0.3556 -2.3880 -0.0016 26 1 3.0653 -3.5640 0.4046 27 1 0.4929 -4.5195 1.3029 28 1 1.8863 -5.6371 0.9704 29 1 -0.1903 -4.5247 -1.0506 30 1 0.0195 -7.0794 -0.4440 31 1 1.6192 -6.9967 -1.2200 32 1 -0.2889 -5.9082 -2.9953 33 1 1.1453 -8.0787 -5.2663 34 1 0.1647 -6.6424 -5.6968 35 1 0.4231 -8.8498 -7.3510 36 1 -1.0147 -7.7898 -7.3513 37 1 -2.2872 -9.5156 -6.5602 38 1 -0.8494 -10.5756 -6.5599 39 1 -2.1667 -9.8031 -4.2479 40 1 -0.4203 -10.2007 -4.2929 41 1 2.8290 -5.0927 -1.4981 42 1 1.8309 -3.7469 -2.2007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100468551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:19 Heat of formation + Delta-G solvation = -89.878041 kcal Electronic energy + Delta-G solvation = -22425.059252 eV Core-core repulsion = 18932.722855 eV Total energy + Delta-G solvation = -3492.336398 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.96621 -41.05807 -39.97459 -37.90035 -36.08692 -35.00857 -32.15197 -30.41528 -29.87535 -28.35021 -26.44939 -25.72539 -23.73149 -22.77824 -21.45981 -21.10907 -19.91296 -19.38219 -18.89524 -17.59928 -17.06203 -16.72557 -16.39941 -16.15027 -16.05996 -15.70815 -15.66543 -15.17764 -14.74196 -14.67933 -14.42746 -13.88711 -13.79505 -13.30558 -13.22238 -12.95140 -12.93664 -12.69154 -12.63949 -12.24000 -12.21411 -12.17211 -12.10078 -11.92372 -11.54759 -11.49203 -11.29828 -11.04122 -10.89107 -10.71205 -10.20008 -9.00779 -7.95775 -5.24309 1.27204 1.48002 1.49103 1.57664 1.92986 2.55561 3.06337 3.22674 3.36432 3.39099 3.63346 3.70920 3.75949 3.86980 4.12102 4.16215 4.28734 4.30974 4.36065 4.38092 4.40044 4.61410 4.68979 4.71393 4.76414 4.91771 4.95529 4.97434 5.00366 5.09136 5.15473 5.20172 5.24343 5.33276 5.37970 5.43862 5.52551 5.65034 6.27842 6.30865 6.93541 7.32738 8.09937 8.31868 9.27563 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026358 B = 0.003068 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.058274 B = 9122.972389 C = 9645.184391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.721 5.721 10 C 0.144 3.856 11 C -0.134 4.134 12 C -0.105 4.105 13 C 0.138 3.862 14 N -0.709 5.709 15 C 0.502 3.498 16 O -0.560 6.560 17 C 0.091 3.909 18 F -0.196 7.196 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.152 4.152 24 H 0.251 0.749 25 H 0.374 0.626 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.411 0.589 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -19.736 -12.325 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.359 5.359 10 C 0.034 3.966 11 C -0.173 4.173 12 C -0.124 4.124 13 C 0.015 3.985 14 N -0.360 5.360 15 C 0.286 3.714 16 O -0.439 6.439 17 C 0.069 3.931 18 F -0.177 7.177 19 C -0.174 4.174 20 C -0.159 4.159 21 C -0.159 4.159 22 C -0.167 4.167 23 C -0.193 4.193 24 H 0.060 0.940 25 H 0.206 0.794 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.126 0.874 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.247 0.753 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.301 -20.259 -11.849 23.471 hybrid contribution -0.510 1.698 0.069 1.774 sum -0.209 -18.560 -11.781 21.984 Atomic orbital electron populations 1.69816 1.06600 1.26079 1.59533 1.25563 0.96381 1.01103 1.03769 0.85145 0.77725 0.79516 0.77413 1.21412 1.22361 1.19389 1.19673 0.91542 0.85159 1.41007 0.90482 1.42323 1.05332 1.00636 1.87617 1.21386 0.95112 0.84862 0.95268 1.23356 0.99972 0.98764 0.95229 1.22506 0.98409 0.93581 0.97871 1.21414 0.98107 0.95806 0.83221 1.46085 1.60630 1.08360 1.20878 1.21004 0.79331 0.83416 0.87610 1.90693 1.52738 1.38257 1.62214 1.22246 0.84000 0.93457 0.93368 1.92886 1.52181 1.75468 1.97120 1.22985 0.98032 1.03088 0.93279 1.22162 1.00296 0.96963 0.96437 1.22174 1.01226 0.99976 0.92515 1.22825 1.03677 0.91756 0.98451 1.23721 0.97172 0.99238 0.99161 0.94030 0.79420 0.92033 0.92462 0.87389 0.90358 0.91704 0.90568 0.75304 0.88902 0.89053 0.89187 0.90613 0.90791 0.89305 0.90408 0.88892 0.88705 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.82 13.06 21.65 0.28 -58.54 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 3 Si 0.97 45.64 29.55 68.60 2.03 47.66 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.24 -13.23 9.97 84.03 0.84 -12.40 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.72 -35.54 5.31 -320.46 -1.70 -37.24 16 10 C 0.14 5.40 4.56 45.52 0.21 5.61 16 11 C -0.13 -4.03 7.39 31.12 0.23 -3.80 16 12 C -0.10 -2.98 3.63 -10.26 -0.04 -3.01 16 13 C 0.14 3.42 5.51 86.38 0.48 3.90 16 14 N -0.71 -17.06 5.53 -463.06 -2.56 -19.62 16 15 C 0.50 12.70 6.90 87.66 0.60 13.31 16 16 O -0.56 -17.31 15.69 -3.03 -0.05 -17.35 16 17 C 0.09 1.85 1.37 -10.26 -0.01 1.84 16 18 F -0.20 -4.53 16.88 44.97 0.76 -3.77 16 19 C -0.14 -2.10 6.07 31.67 0.19 -1.90 16 20 C -0.12 -1.44 6.80 31.32 0.21 -1.22 16 21 C -0.12 -1.51 6.80 31.32 0.21 -1.30 16 22 C -0.13 -2.29 5.80 31.66 0.18 -2.10 16 23 C -0.15 -4.73 7.43 31.12 0.23 -4.50 16 24 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 25 H 0.37 19.81 7.90 -92.70 -0.73 19.08 16 26 H 0.06 2.31 8.10 -2.39 -0.02 2.29 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.11 2.62 8.10 -2.39 -0.02 2.60 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.83 7.84 -2.39 -0.02 1.82 16 32 H 0.41 9.16 8.40 -92.71 -0.78 8.38 16 33 H 0.09 1.38 8.04 -2.38 -0.02 1.36 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.77 7.30 -2.39 -0.02 1.75 16 41 H 0.09 2.46 7.90 -2.39 -0.02 2.45 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -66.04 346.20 2.08 -63.97 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.49 Total: 34.32 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 3.80 Total: -9.44 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -3.98 Total: -115.39 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.05 Total: -17.35 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.76 Total: -3.77 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -66.04 2.08 -63.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100468551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.912 kcal (2) G-P(sol) polarization free energy of solvation -66.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds