Wall clock time and date at job start Tue Mar 31 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99565 * 2 1 4 4 H 1.48500 * 109.47517 * 240.00298 * 3 2 1 5 5 H 1.48501 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46906 * 120.00031 * 3 2 1 7 7 C 1.38805 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99808 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99577 * 180.02562 * 9 7 2 11 11 C 1.53783 * 113.61094 * 155.00064 * 10 9 7 12 12 C 1.53777 * 87.08433 * 89.11213 * 11 10 9 13 13 C 1.53005 * 113.61577 * 139.97622 * 12 11 10 14 14 N 1.46498 * 109.47122 * 175.00095 * 13 12 11 15 15 C 1.34775 * 120.00078 * 179.72654 * 14 13 12 16 16 O 1.21280 * 120.00028 * 355.30752 * 15 14 13 17 17 C 1.50704 * 120.00048 * 175.30149 * 15 14 13 18 18 C 1.53001 * 115.55026 * 303.27780 * 17 15 14 19 19 C 1.52999 * 109.46827 * 294.75036 * 18 17 15 20 20 F 1.39906 * 109.46671 * 175.87999 * 19 18 17 21 21 C 1.52994 * 117.49543 * 157.60938 * 17 15 14 22 22 C 1.52999 * 117.49751 * 88.94848 * 17 15 14 23 23 C 1.53786 * 113.61048 * 252.49278 * 10 9 7 24 24 H 0.96995 * 120.00500 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00577 * 0.02562 * 9 7 2 26 26 H 1.08996 * 112.85545 * 23.80311 * 10 9 7 27 27 H 1.08996 * 113.61498 * 334.56296 * 11 10 9 28 28 H 1.09005 * 113.61101 * 203.66010 * 11 10 9 29 29 H 1.08999 * 113.61558 * 270.79927 * 12 11 10 30 30 H 1.09003 * 109.46362 * 55.00704 * 13 12 11 31 31 H 1.08994 * 109.47056 * 295.00308 * 13 12 11 32 32 H 0.97001 * 119.99852 * 0.02562 * 14 13 12 33 33 H 1.09000 * 109.46817 * 54.75067 * 18 17 15 34 34 H 1.08998 * 109.46782 * 174.74801 * 18 17 15 35 35 H 1.08994 * 109.47465 * 295.87515 * 19 18 17 36 36 H 1.08997 * 109.47347 * 55.88128 * 19 18 17 37 37 H 1.09000 * 117.50557 * 359.97438 * 21 17 15 38 38 H 1.09004 * 117.50042 * 145.02163 * 21 17 15 39 39 H 1.09000 * 117.50084 * 214.97846 * 22 17 15 40 40 H 1.09002 * 117.49513 * 359.97438 * 22 17 15 41 41 H 1.09000 * 113.61015 * 156.33800 * 23 10 9 42 42 H 1.09000 * 113.61655 * 25.43903 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6967 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0005 11 6 1.2605 -4.8287 0.5950 12 6 0.7207 -5.0791 -0.8230 13 6 0.6200 -6.5617 -1.1876 14 7 -0.0119 -6.6994 -2.5021 15 6 -0.2011 -7.9233 -3.0340 16 8 0.2275 -8.9047 -2.4647 17 6 -0.9453 -8.0723 -4.3359 18 6 -2.3578 -7.4847 -4.3596 19 6 -3.2485 -8.2587 -3.3857 20 9 -4.5136 -7.6634 -3.3371 21 6 -0.6947 -9.3423 -5.1514 22 6 -0.1292 -8.0021 -5.6282 23 6 1.9993 -4.4021 -1.3444 24 1 -0.4850 0.8400 0.0004 25 1 0.3557 -2.3881 -0.0005 26 1 3.0659 -3.5637 0.4048 27 1 0.4942 -4.5190 1.3055 28 1 1.8875 -5.6366 0.9724 29 1 -0.1908 -4.5252 -1.0474 30 1 0.0196 -7.0796 -0.4398 31 1 1.6187 -6.9972 -1.2172 32 1 -0.2903 -5.9096 -2.9916 33 1 -2.3202 -6.4365 -4.0630 34 1 -2.7669 -7.5628 -5.3668 35 1 -3.3452 -9.2905 -3.7234 36 1 -2.8007 -8.2421 -2.3921 37 1 0.0087 -10.0698 -4.7466 38 1 -1.5361 -9.7590 -5.7052 39 1 -0.5987 -7.5376 -6.4953 40 1 0.9459 -7.8477 -5.5366 41 1 2.8282 -5.0932 -1.4970 42 1 1.8295 -3.7478 -2.1995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100530932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:48 Heat of formation + Delta-G solvation = -45.585025 kcal Electronic energy + Delta-G solvation = -22216.877967 eV Core-core repulsion = 18726.462259 eV Total energy + Delta-G solvation = -3490.415708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.81271 -40.39269 -38.73478 -37.07304 -34.72161 -33.22475 -31.54256 -30.21255 -27.71543 -25.09792 -24.62323 -23.73520 -23.02488 -22.56740 -21.60533 -19.71554 -18.32604 -17.49382 -17.15100 -16.51407 -16.14177 -16.00791 -15.29881 -15.24282 -14.92903 -14.70456 -14.25501 -14.04520 -13.78441 -13.21747 -13.07167 -12.90167 -12.60452 -12.30175 -11.95543 -11.91093 -11.86161 -11.42775 -11.11504 -11.07066 -10.85581 -10.83738 -10.54663 -10.38468 -10.22720 -10.11131 -9.79249 -9.71471 -9.49131 -9.05290 -8.90440 -7.02945 -5.82967 -3.12309 2.39646 3.00631 3.34418 3.40791 3.45448 3.46297 4.04221 4.34304 4.39631 4.49583 4.53630 4.63685 4.79444 4.86050 5.00863 5.02579 5.10499 5.20344 5.27816 5.42467 5.42790 5.50290 5.57720 5.59030 5.68036 5.70866 5.78741 5.83207 5.91705 6.07328 6.17854 6.34135 6.36788 6.55727 6.71203 6.86502 7.01030 7.44343 7.66136 8.11670 8.36109 9.46757 10.04003 10.38270 11.39346 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.003197 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.123679 B = 8756.025140 C = 9205.944392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.167 3.833 11 C -0.148 4.148 12 C -0.120 4.120 13 C 0.130 3.870 14 N -0.717 5.717 15 C 0.545 3.455 16 O -0.542 6.542 17 C -0.164 4.164 18 C -0.109 4.109 19 C 0.063 3.937 20 F -0.217 7.217 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.168 4.168 24 H 0.257 0.743 25 H 0.385 0.615 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.404 0.596 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 -17.772 -10.087 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.188 4.188 12 C -0.138 4.138 13 C 0.007 3.993 14 N -0.368 5.368 15 C 0.331 3.669 16 O -0.419 6.419 17 C -0.168 4.168 18 C -0.147 4.147 19 C 0.008 3.992 20 F -0.198 7.198 21 C -0.181 4.181 22 C -0.187 4.187 23 C -0.209 4.209 24 H 0.066 0.934 25 H 0.219 0.781 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.238 0.762 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.725 -18.263 -9.615 20.818 hybrid contribution -0.103 1.360 -0.270 1.391 sum -2.827 -16.903 -9.885 19.784 Atomic orbital electron populations 1.69646 1.05141 1.25947 1.57316 1.24758 0.95529 0.97778 1.02691 0.86248 0.78530 0.83375 0.77904 1.21204 1.21658 1.21188 1.19246 0.91099 0.83989 1.43211 0.91046 1.42160 1.05667 0.99415 1.87158 1.21056 0.95119 0.85604 0.92732 1.23448 1.00511 0.99716 0.95097 1.22714 0.99619 0.92834 0.98674 1.21518 0.97694 0.97175 0.82906 1.46029 1.61774 1.08038 1.20930 1.19440 0.79175 0.83300 0.85014 1.90697 1.50540 1.38304 1.62365 1.21370 0.96768 1.06359 0.92256 1.21655 0.91151 1.00693 1.01214 1.21931 0.79139 0.96928 1.01202 1.92781 1.43004 1.86140 1.97889 1.23047 1.03624 0.90746 1.00720 1.23101 0.99967 1.00692 0.94979 1.23889 0.95611 0.99615 1.01794 0.93356 0.78109 0.91953 0.91295 0.90469 0.88863 0.91847 0.91485 0.76163 0.89606 0.89581 0.90470 0.90817 0.87454 0.87822 0.87542 0.88028 0.91439 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.15 5.31 -52.63 -0.28 -17.43 16 10 C 0.17 3.20 4.56 -67.11 -0.31 2.90 16 11 C -0.15 -2.33 7.39 -25.92 -0.19 -2.52 16 12 C -0.12 -1.74 3.63 -89.80 -0.33 -2.06 16 13 C 0.13 1.69 5.52 -4.04 -0.02 1.67 16 14 N -0.72 -8.40 5.53 -60.29 -0.33 -8.74 16 15 C 0.55 6.69 6.46 -10.98 -0.07 6.61 16 16 O -0.54 -8.54 16.50 5.56 0.09 -8.45 16 17 C -0.16 -1.47 1.91 -155.66 -0.30 -1.77 16 18 C -0.11 -0.87 5.53 -26.73 -0.15 -1.02 16 19 C 0.06 0.57 7.47 37.16 0.28 0.85 16 20 F -0.22 -2.50 17.36 2.25 0.04 -2.46 16 21 C -0.14 -1.12 9.76 -26.69 -0.26 -1.38 16 22 C -0.15 -1.11 9.93 -26.69 -0.26 -1.37 16 23 C -0.17 -2.73 7.43 -25.91 -0.19 -2.92 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.38 9.90 7.90 -40.82 -0.32 9.57 16 26 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 32 H 0.40 4.20 8.31 -40.82 -0.34 3.86 16 33 H 0.09 0.70 7.97 -51.93 -0.41 0.29 16 34 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.74 7.59 -51.93 -0.39 0.34 16 37 H 0.11 0.97 7.85 -51.93 -0.41 0.57 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -31.33 354.62 -8.37 -39.70 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.88 Total: 10.16 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.05 Total: -8.23 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.11 Total: -53.04 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.33 -8.37 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100530932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.885 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds