Wall clock time and date at job start Tue Mar 31 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99565 * 2 1 4 4 H 1.48500 * 109.47517 * 240.00298 * 3 2 1 5 5 H 1.48501 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46906 * 120.00031 * 3 2 1 7 7 C 1.38805 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99808 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99928 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99577 * 180.02562 * 9 7 2 11 11 C 1.53783 * 113.61094 * 155.00064 * 10 9 7 12 12 C 1.53777 * 87.08433 * 89.11213 * 11 10 9 13 13 C 1.53005 * 113.61577 * 139.97622 * 12 11 10 14 14 N 1.46498 * 109.47122 * 175.00095 * 13 12 11 15 15 C 1.34775 * 120.00078 * 179.72654 * 14 13 12 16 16 O 1.21280 * 120.00028 * 355.30752 * 15 14 13 17 17 C 1.50704 * 120.00048 * 175.30149 * 15 14 13 18 18 C 1.53001 * 115.55026 * 303.27780 * 17 15 14 19 19 C 1.52999 * 109.46827 * 294.75036 * 18 17 15 20 20 F 1.39906 * 109.46671 * 175.87999 * 19 18 17 21 21 C 1.52994 * 117.49543 * 157.60938 * 17 15 14 22 22 C 1.52999 * 117.49751 * 88.94848 * 17 15 14 23 23 C 1.53786 * 113.61048 * 252.49278 * 10 9 7 24 24 H 0.96995 * 120.00500 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00577 * 0.02562 * 9 7 2 26 26 H 1.08996 * 112.85545 * 23.80311 * 10 9 7 27 27 H 1.08996 * 113.61498 * 334.56296 * 11 10 9 28 28 H 1.09005 * 113.61101 * 203.66010 * 11 10 9 29 29 H 1.08999 * 113.61558 * 270.79927 * 12 11 10 30 30 H 1.09003 * 109.46362 * 55.00704 * 13 12 11 31 31 H 1.08994 * 109.47056 * 295.00308 * 13 12 11 32 32 H 0.97001 * 119.99852 * 0.02562 * 14 13 12 33 33 H 1.09000 * 109.46817 * 54.75067 * 18 17 15 34 34 H 1.08998 * 109.46782 * 174.74801 * 18 17 15 35 35 H 1.08994 * 109.47465 * 295.87515 * 19 18 17 36 36 H 1.08997 * 109.47347 * 55.88128 * 19 18 17 37 37 H 1.09000 * 117.50557 * 359.97438 * 21 17 15 38 38 H 1.09004 * 117.50042 * 145.02163 * 21 17 15 39 39 H 1.09000 * 117.50084 * 214.97846 * 22 17 15 40 40 H 1.09002 * 117.49513 * 359.97438 * 22 17 15 41 41 H 1.09000 * 113.61015 * 156.33800 * 23 10 9 42 42 H 1.09000 * 113.61655 * 25.43903 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6967 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0584 -3.6567 -0.0005 11 6 1.2605 -4.8287 0.5950 12 6 0.7207 -5.0791 -0.8230 13 6 0.6200 -6.5617 -1.1876 14 7 -0.0119 -6.6994 -2.5021 15 6 -0.2011 -7.9233 -3.0340 16 8 0.2275 -8.9047 -2.4647 17 6 -0.9453 -8.0723 -4.3359 18 6 -2.3578 -7.4847 -4.3596 19 6 -3.2485 -8.2587 -3.3857 20 9 -4.5136 -7.6634 -3.3371 21 6 -0.6947 -9.3423 -5.1514 22 6 -0.1292 -8.0021 -5.6282 23 6 1.9993 -4.4021 -1.3444 24 1 -0.4850 0.8400 0.0004 25 1 0.3557 -2.3881 -0.0005 26 1 3.0659 -3.5637 0.4048 27 1 0.4942 -4.5190 1.3055 28 1 1.8875 -5.6366 0.9724 29 1 -0.1908 -4.5252 -1.0474 30 1 0.0196 -7.0796 -0.4398 31 1 1.6187 -6.9972 -1.2172 32 1 -0.2903 -5.9096 -2.9916 33 1 -2.3202 -6.4365 -4.0630 34 1 -2.7669 -7.5628 -5.3668 35 1 -3.3452 -9.2905 -3.7234 36 1 -2.8007 -8.2421 -2.3921 37 1 0.0087 -10.0698 -4.7466 38 1 -1.5361 -9.7590 -5.7052 39 1 -0.5987 -7.5376 -6.4953 40 1 0.9459 -7.8477 -5.5366 41 1 2.8282 -5.0932 -1.4970 42 1 1.8295 -3.7478 -2.1995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100530932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:48 Heat of formation + Delta-G solvation = -65.202037 kcal Electronic energy + Delta-G solvation = -22217.728625 eV Core-core repulsion = 18726.462259 eV Total energy + Delta-G solvation = -3491.266366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.62973 -41.32169 -40.06314 -37.90177 -36.02640 -34.96041 -32.27305 -31.99625 -29.00563 -26.44986 -25.95063 -25.09361 -23.93558 -23.28243 -22.79406 -20.72542 -19.66415 -19.30378 -18.12604 -17.33197 -17.12482 -16.87066 -16.67095 -16.25285 -16.11363 -15.75063 -15.70245 -15.27495 -14.91552 -14.68852 -14.48191 -13.78732 -13.69489 -13.40298 -13.28559 -12.93647 -12.92076 -12.65090 -12.58280 -12.42884 -12.20296 -12.08552 -11.83353 -11.56689 -11.51574 -11.46021 -11.09022 -10.95337 -10.87113 -10.68832 -10.09270 -9.00356 -7.95320 -5.23840 1.47982 1.48258 1.50592 1.56765 2.11466 2.55926 2.67096 3.37075 3.39104 3.62091 3.69279 3.73782 3.76776 3.77496 3.91005 3.97601 4.13316 4.14304 4.17704 4.31657 4.39298 4.48032 4.70221 4.72953 4.73928 4.81022 4.91327 4.92894 4.98003 4.98470 5.06853 5.10836 5.21455 5.27076 5.33901 5.47680 5.53911 5.65174 6.28049 6.49946 7.16738 7.33242 8.10191 8.32620 9.27695 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.003197 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.123679 B = 8756.025140 C = 9205.944392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.143 3.857 11 C -0.135 4.135 12 C -0.102 4.102 13 C 0.139 3.861 14 N -0.714 5.714 15 C 0.543 3.457 16 O -0.581 6.581 17 C -0.173 4.173 18 C -0.102 4.102 19 C 0.059 3.941 20 F -0.231 7.231 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.152 4.152 24 H 0.251 0.749 25 H 0.374 0.626 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.411 0.589 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 -18.701 -11.432 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 C -0.174 4.174 12 C -0.121 4.121 13 C 0.016 3.984 14 N -0.364 5.364 15 C 0.331 3.669 16 O -0.461 6.461 17 C -0.176 4.176 18 C -0.140 4.140 19 C 0.004 3.996 20 F -0.213 7.213 21 C -0.178 4.178 22 C -0.175 4.175 23 C -0.192 4.192 24 H 0.060 0.940 25 H 0.206 0.794 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.247 0.753 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.166 -19.219 -10.973 22.237 hybrid contribution -0.203 1.558 0.174 1.580 sum -2.368 -17.662 -10.799 20.837 Atomic orbital electron populations 1.69800 1.06567 1.26171 1.59373 1.25534 0.96348 1.01008 1.03634 0.85233 0.77214 0.79256 0.78184 1.20355 1.22247 1.20487 1.19640 0.91532 0.85226 1.41326 0.90589 1.42288 1.05300 1.00533 1.87658 1.21390 0.95068 0.84935 0.95292 1.23353 0.99975 0.98686 0.95425 1.22485 0.98334 0.93665 0.97584 1.21315 0.97875 0.95556 0.83668 1.46002 1.61419 1.08505 1.20514 1.20001 0.78585 0.82564 0.85798 1.90675 1.52279 1.39400 1.63719 1.21284 0.97105 1.08092 0.91139 1.21620 0.90219 1.00073 1.02054 1.22064 0.78496 0.98085 1.00950 1.92751 1.44085 1.86504 1.97938 1.23132 1.04100 0.90340 1.00192 1.23215 0.99559 1.00195 0.94484 1.23701 0.97236 0.99175 0.99133 0.93997 0.79367 0.92220 0.92420 0.87665 0.90091 0.91913 0.91444 0.75330 0.90002 0.87289 0.88706 0.92315 0.89099 0.85376 0.85127 0.88734 0.89100 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 3 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.25 -13.41 9.97 84.03 0.84 -12.58 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -35.35 5.31 -320.43 -1.70 -37.05 16 10 C 0.14 5.40 4.56 45.52 0.21 5.61 16 11 C -0.14 -4.08 7.39 31.12 0.23 -3.85 16 12 C -0.10 -2.85 3.63 -10.27 -0.04 -2.89 16 13 C 0.14 3.43 5.52 86.38 0.48 3.91 16 14 N -0.71 -15.96 5.53 -463.06 -2.56 -18.52 16 15 C 0.54 12.77 6.46 87.66 0.57 13.34 16 16 O -0.58 -18.01 16.50 -3.03 -0.05 -18.06 16 17 C -0.17 -2.76 1.91 -52.93 -0.10 -2.86 16 18 C -0.10 -1.41 5.53 30.59 0.17 -1.24 16 19 C 0.06 1.00 7.47 71.98 0.54 1.53 16 20 F -0.23 -5.11 17.36 44.97 0.78 -4.33 16 21 C -0.14 -1.86 9.76 30.62 0.30 -1.56 16 22 C -0.14 -1.66 9.93 30.62 0.30 -1.36 16 23 C -0.15 -4.74 7.43 31.12 0.23 -4.51 16 24 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 25 H 0.37 19.69 7.90 -92.71 -0.73 18.96 16 26 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.11 2.61 8.10 -2.38 -0.02 2.59 16 29 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.70 7.84 -2.39 -0.02 1.68 16 32 H 0.41 8.08 8.31 -92.71 -0.77 7.31 16 33 H 0.08 1.20 7.97 -2.39 -0.02 1.18 16 34 H 0.11 1.05 8.09 -2.39 -0.02 1.03 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.16 7.59 -2.39 -0.02 1.14 16 37 H 0.09 1.54 7.85 -2.39 -0.02 1.52 16 38 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 2.44 7.90 -2.39 -0.02 2.42 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -67.94 354.62 2.48 -65.46 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: -0.48 Total: 33.25 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 4.19 Total: -10.13 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -3.98 Total: -113.66 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.05 Total: -18.06 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.78 Total: -4.33 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -67.94 2.48 -65.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100530932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.258 kcal (2) G-P(sol) polarization free energy of solvation -67.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds