Wall clock time and date at job start Tue Mar 31 2020 06:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48497 * 109.46976 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46795 * 299.99416 * 3 2 1 6 6 H 1.48493 * 109.47557 * 59.99178 * 3 2 1 7 7 C 1.38812 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00476 * 179.97438 * 9 7 2 11 11 C 1.53776 * 113.61566 * 205.00152 * 10 9 7 12 12 C 1.53787 * 87.07971 * 219.93186 * 11 10 9 13 13 C 1.53000 * 113.61228 * 139.97805 * 12 11 10 14 14 N 1.46499 * 109.46840 * 174.99997 * 13 12 11 15 15 C 1.34779 * 119.99872 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99944 * 180.02562 * 15 14 13 18 18 C 1.52996 * 112.85014 * 48.80451 * 17 15 14 19 19 F 1.39898 * 109.47291 * 189.66805 * 18 17 15 20 20 C 1.53778 * 113.61229 * 277.49920 * 17 15 14 21 21 C 1.53781 * 87.08237 * 220.02009 * 20 17 15 22 22 C 1.53781 * 113.61229 * 180.02562 * 17 15 14 23 23 C 1.53781 * 113.69047 * 107.45923 * 10 9 7 24 24 H 0.97000 * 120.00415 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99551 * 359.97438 * 9 7 2 26 26 H 1.09004 * 112.84406 * 336.19717 * 10 9 7 27 27 H 1.08999 * 113.61671 * 105.38832 * 11 10 9 28 28 H 1.08993 * 113.61590 * 334.47649 * 11 10 9 29 29 H 1.08992 * 113.61688 * 270.80015 * 12 11 10 30 30 H 1.09002 * 109.47398 * 295.00323 * 13 12 11 31 31 H 1.09001 * 109.47194 * 55.00504 * 13 12 11 32 32 H 0.97000 * 120.00420 * 0.02562 * 14 13 12 33 33 H 1.09002 * 109.47250 * 309.66597 * 18 17 15 34 34 H 1.09006 * 109.47461 * 69.66749 * 18 17 15 35 35 H 1.09003 * 113.61860 * 334.56222 * 20 17 15 36 36 H 1.09001 * 113.61664 * 105.47216 * 20 17 15 37 37 H 1.09007 * 113.61482 * 270.88678 * 21 20 17 38 38 H 1.08992 * 113.61967 * 139.98194 * 21 20 17 39 39 H 1.09001 * 113.61235 * 254.52831 * 22 17 15 40 40 H 1.08994 * 113.61480 * 25.43152 * 22 17 15 41 41 H 1.08998 * 113.61029 * 25.45404 * 23 10 9 42 42 H 1.08997 * 113.61702 * 254.54562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3966 1.2123 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.2601 -4.8288 -0.5950 12 6 1.8497 -5.6982 0.5282 13 6 0.8478 -6.6867 1.1281 14 7 1.5306 -7.5451 2.0993 15 6 0.8418 -8.4984 2.7575 16 8 -0.3434 -8.6453 2.5461 17 6 1.5440 -9.3810 3.7570 18 6 2.3944 -8.5905 4.7534 19 9 3.1806 -9.4746 5.5000 20 6 2.2844 -10.5676 3.1178 21 6 1.7833 -11.4152 4.2990 22 6 0.6206 -10.4165 4.4201 23 6 2.0010 -4.4032 1.3439 24 1 -0.4851 0.8400 -0.0004 25 1 0.3556 -2.3880 0.0005 26 1 3.0656 -3.5638 -0.4049 27 1 1.5907 -5.1203 -1.5919 28 1 0.1799 -4.7009 -0.5266 29 1 2.7995 -6.1644 0.2666 30 1 0.0494 -6.1373 1.6269 31 1 0.4245 -7.3019 0.3341 32 1 2.4784 -7.4273 2.2687 33 1 3.0399 -7.8990 4.2119 34 1 1.7422 -8.0299 5.4233 35 1 1.8722 -10.8725 2.1558 36 1 3.3674 -10.4460 3.0960 37 1 2.4556 -11.4091 5.1570 38 1 1.4686 -12.4189 4.0138 39 1 0.3599 -10.1729 5.4501 40 1 -0.2462 -10.6800 3.8141 41 1 1.1232 -4.1590 1.9421 42 1 2.9297 -4.3511 1.9121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100692234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:09 Heat of formation + Delta-G solvation = -43.802213 kcal Electronic energy + Delta-G solvation = -22282.204389 eV Core-core repulsion = 18791.865989 eV Total energy + Delta-G solvation = -3490.338400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.13548 -40.62465 -38.80522 -37.58506 -34.79636 -33.34294 -30.54404 -29.67979 -27.26742 -26.02109 -25.13907 -24.60726 -23.75891 -21.31365 -21.06427 -19.41319 -18.95161 -17.92016 -17.06771 -16.54092 -16.35591 -15.85563 -15.64439 -15.27966 -14.89162 -14.61380 -14.33950 -13.84909 -13.59582 -13.40330 -13.03208 -12.80206 -12.64046 -12.43499 -11.95897 -11.86928 -11.47193 -11.45742 -11.36710 -11.26845 -10.87855 -10.66756 -10.56482 -10.55302 -10.28569 -10.13571 -9.86816 -9.81561 -9.50651 -9.11723 -8.90359 -6.99470 -5.81166 -3.10222 2.39567 3.01050 3.40389 3.45965 3.48378 3.86146 4.06816 4.07690 4.35159 4.45389 4.55686 4.69808 4.84285 4.93162 4.93821 5.10822 5.17419 5.21551 5.37006 5.43437 5.45965 5.46553 5.59047 5.65509 5.76891 5.80020 5.81208 5.89115 6.05595 6.07930 6.19734 6.26901 6.31432 6.39032 6.54563 6.78233 7.07048 7.35057 7.66731 8.05524 8.37331 9.48481 10.06546 10.40605 11.41256 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031729 B = 0.002803 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.253147 B = 9985.971543 C =10327.983087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.128 4.128 13 C 0.131 3.869 14 N -0.722 5.722 15 C 0.529 3.471 16 O -0.534 6.534 17 C -0.148 4.148 18 C 0.090 3.910 19 F -0.206 7.206 20 C -0.115 4.115 21 C -0.145 4.145 22 C -0.110 4.110 23 C -0.161 4.161 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.399 0.601 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 -22.069 7.528 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.147 4.147 13 C 0.008 3.992 14 N -0.373 5.373 15 C 0.314 3.686 16 O -0.410 6.410 17 C -0.151 4.151 18 C 0.034 3.966 19 F -0.187 7.187 20 C -0.153 4.153 21 C -0.182 4.182 22 C -0.148 4.148 23 C -0.202 4.202 24 H 0.065 0.935 25 H 0.219 0.781 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.233 0.767 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.285 -21.979 7.355 23.772 hybrid contribution 0.591 1.044 0.093 1.203 sum 5.876 -20.935 7.448 22.985 Atomic orbital electron populations 1.69669 1.05150 1.25676 1.57480 1.24778 0.95529 0.97824 1.02819 0.86119 0.78782 0.84076 0.77217 1.20525 1.21821 1.21841 1.19343 0.91088 0.84223 1.42874 0.91045 1.42425 1.05783 0.99902 1.86975 1.21513 0.95323 0.85051 0.92739 1.23451 1.01055 0.97004 0.96713 1.22647 0.98374 0.94389 0.99285 1.21481 0.95335 0.91550 0.90879 1.46128 1.13236 1.35015 1.42962 1.20006 0.87060 0.80120 0.81415 1.90710 1.15167 1.69479 1.65669 1.22846 0.99660 0.95636 0.96992 1.21625 0.92651 0.89668 0.92620 1.92741 1.76332 1.71192 1.78401 1.22830 1.00240 0.93442 0.98784 1.23012 0.98194 0.98094 0.98937 1.22842 0.97232 0.93698 1.01004 1.23956 1.01334 0.94940 1.00004 0.93467 0.78060 0.90669 0.91976 0.90091 0.89375 0.91089 0.91702 0.76665 0.89984 0.89585 0.89367 0.90318 0.88602 0.91113 0.90830 0.88367 0.90334 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.55 5.40 -52.64 -0.28 -17.84 16 10 C 0.17 3.12 4.48 -67.12 -0.30 2.82 16 11 C -0.14 -2.20 7.39 -25.92 -0.19 -2.39 16 12 C -0.13 -1.61 3.76 -89.80 -0.34 -1.95 16 13 C 0.13 1.63 5.51 -4.04 -0.02 1.60 16 14 N -0.72 -7.54 5.44 -60.29 -0.33 -7.87 16 15 C 0.53 6.22 6.93 -10.98 -0.08 6.14 16 16 O -0.53 -8.45 15.90 5.56 0.09 -8.36 16 17 C -0.15 -1.31 1.26 -154.85 -0.19 -1.50 16 18 C 0.09 0.67 6.96 37.16 0.26 0.93 16 19 F -0.21 -1.79 14.57 2.25 0.03 -1.75 16 20 C -0.12 -0.88 6.96 -25.92 -0.18 -1.07 16 21 C -0.15 -1.09 7.56 -25.94 -0.20 -1.28 16 22 C -0.11 -0.98 6.97 -25.94 -0.18 -1.17 16 23 C -0.16 -2.55 7.43 -25.92 -0.19 -2.74 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.39 10.13 7.92 -40.82 -0.32 9.81 16 26 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.40 3.18 7.38 -40.82 -0.30 2.88 16 33 H 0.08 0.49 7.04 -51.93 -0.37 0.12 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 36 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 37 H 0.10 0.72 6.44 -51.93 -0.33 0.39 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 40 H 0.10 1.01 7.43 -51.93 -0.39 0.62 16 41 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -31.74 343.29 -8.19 -39.93 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.71 Total: 8.77 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.86 Total: -7.90 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.11 Total: -52.97 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.03 Total: -1.75 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.74 -8.19 -39.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100692234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.872 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds