Wall clock time and date at job start Tue Mar 31 2020 06:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48497 * 109.46976 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46795 * 299.99416 * 3 2 1 6 6 H 1.48493 * 109.47557 * 59.99178 * 3 2 1 7 7 C 1.38812 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00476 * 179.97438 * 9 7 2 11 11 C 1.53776 * 113.61566 * 205.00152 * 10 9 7 12 12 C 1.53787 * 87.07971 * 219.93186 * 11 10 9 13 13 C 1.53000 * 113.61228 * 139.97805 * 12 11 10 14 14 N 1.46499 * 109.46840 * 174.99997 * 13 12 11 15 15 C 1.34779 * 119.99872 * 180.02562 * 14 13 12 16 16 O 1.21278 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99944 * 180.02562 * 15 14 13 18 18 C 1.52996 * 112.85014 * 48.80451 * 17 15 14 19 19 F 1.39898 * 109.47291 * 189.66805 * 18 17 15 20 20 C 1.53778 * 113.61229 * 277.49920 * 17 15 14 21 21 C 1.53781 * 87.08237 * 220.02009 * 20 17 15 22 22 C 1.53781 * 113.61229 * 180.02562 * 17 15 14 23 23 C 1.53781 * 113.69047 * 107.45923 * 10 9 7 24 24 H 0.97000 * 120.00415 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99551 * 359.97438 * 9 7 2 26 26 H 1.09004 * 112.84406 * 336.19717 * 10 9 7 27 27 H 1.08999 * 113.61671 * 105.38832 * 11 10 9 28 28 H 1.08993 * 113.61590 * 334.47649 * 11 10 9 29 29 H 1.08992 * 113.61688 * 270.80015 * 12 11 10 30 30 H 1.09002 * 109.47398 * 295.00323 * 13 12 11 31 31 H 1.09001 * 109.47194 * 55.00504 * 13 12 11 32 32 H 0.97000 * 120.00420 * 0.02562 * 14 13 12 33 33 H 1.09002 * 109.47250 * 309.66597 * 18 17 15 34 34 H 1.09006 * 109.47461 * 69.66749 * 18 17 15 35 35 H 1.09003 * 113.61860 * 334.56222 * 20 17 15 36 36 H 1.09001 * 113.61664 * 105.47216 * 20 17 15 37 37 H 1.09007 * 113.61482 * 270.88678 * 21 20 17 38 38 H 1.08992 * 113.61967 * 139.98194 * 21 20 17 39 39 H 1.09001 * 113.61235 * 254.52831 * 22 17 15 40 40 H 1.08994 * 113.61480 * 25.43152 * 22 17 15 41 41 H 1.08998 * 113.61029 * 25.45404 * 23 10 9 42 42 H 1.08997 * 113.61702 * 254.54562 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3966 1.2123 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.2601 -4.8288 -0.5950 12 6 1.8497 -5.6982 0.5282 13 6 0.8478 -6.6867 1.1281 14 7 1.5306 -7.5451 2.0993 15 6 0.8418 -8.4984 2.7575 16 8 -0.3434 -8.6453 2.5461 17 6 1.5440 -9.3810 3.7570 18 6 2.3944 -8.5905 4.7534 19 9 3.1806 -9.4746 5.5000 20 6 2.2844 -10.5676 3.1178 21 6 1.7833 -11.4152 4.2990 22 6 0.6206 -10.4165 4.4201 23 6 2.0010 -4.4032 1.3439 24 1 -0.4851 0.8400 -0.0004 25 1 0.3556 -2.3880 0.0005 26 1 3.0656 -3.5638 -0.4049 27 1 1.5907 -5.1203 -1.5919 28 1 0.1799 -4.7009 -0.5266 29 1 2.7995 -6.1644 0.2666 30 1 0.0494 -6.1373 1.6269 31 1 0.4245 -7.3019 0.3341 32 1 2.4784 -7.4273 2.2687 33 1 3.0399 -7.8990 4.2119 34 1 1.7422 -8.0299 5.4233 35 1 1.8722 -10.8725 2.1558 36 1 3.3674 -10.4460 3.0960 37 1 2.4556 -11.4091 5.1570 38 1 1.4686 -12.4189 4.0138 39 1 0.3599 -10.1729 5.4501 40 1 -0.2462 -10.6800 3.8141 41 1 1.1232 -4.1590 1.9421 42 1 2.9297 -4.3511 1.9121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100692234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:08 Heat of formation + Delta-G solvation = -64.302687 kcal Electronic energy + Delta-G solvation = -22283.093356 eV Core-core repulsion = 18791.865989 eV Total energy + Delta-G solvation = -3491.227367 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.76004 -41.50066 -40.04193 -38.47591 -36.08836 -35.05199 -32.25896 -30.62028 -28.40268 -26.70038 -26.45247 -25.92960 -25.06135 -22.56583 -22.02238 -20.62485 -19.87572 -19.07559 -18.67204 -17.41943 -17.01370 -16.84077 -16.62814 -16.36854 -16.18254 -15.78104 -15.55807 -15.16319 -14.88260 -14.54643 -14.39221 -13.51768 -13.41122 -13.37809 -13.23000 -13.14108 -13.01462 -12.92340 -12.66957 -12.21784 -12.15802 -12.05685 -11.96875 -11.59630 -11.54576 -11.30373 -11.18158 -11.10362 -10.84474 -10.68895 -10.12059 -8.97524 -7.94660 -5.22926 1.47719 1.48138 1.48356 1.58264 2.10913 2.56803 3.19005 3.36620 3.39666 3.41079 3.64347 3.73909 3.76361 3.83625 3.92207 4.10956 4.26097 4.28500 4.35157 4.41792 4.49770 4.55417 4.58690 4.74236 4.77933 4.83015 4.96548 4.98300 4.99519 5.05613 5.06125 5.16531 5.22891 5.34280 5.41887 5.46205 5.53454 5.73862 6.27981 6.49758 7.17194 7.33344 8.11946 8.33205 9.29158 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031729 B = 0.002803 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.253147 B = 9985.971543 C =10327.983087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.142 3.858 11 C -0.138 4.138 12 C -0.095 4.095 13 C 0.137 3.863 14 N -0.709 5.709 15 C 0.529 3.471 16 O -0.580 6.580 17 C -0.143 4.143 18 C 0.089 3.911 19 F -0.210 7.210 20 C -0.110 4.110 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.153 4.153 24 H 0.250 0.750 25 H 0.371 0.629 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.123 0.877 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.415 0.585 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.664 -23.381 7.825 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.033 3.967 11 C -0.178 4.178 12 C -0.114 4.114 13 C 0.013 3.987 14 N -0.361 5.361 15 C 0.315 3.685 16 O -0.460 6.460 17 C -0.147 4.147 18 C 0.034 3.966 19 F -0.191 7.191 20 C -0.148 4.148 21 C -0.174 4.174 22 C -0.157 4.157 23 C -0.193 4.193 24 H 0.059 0.941 25 H 0.203 0.797 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.141 0.859 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.252 0.748 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.015 -23.341 7.661 25.840 hybrid contribution -0.226 1.365 -0.003 1.383 sum 7.789 -21.976 7.658 24.541 Atomic orbital electron populations 1.69829 1.06740 1.25926 1.59898 1.25597 0.96360 1.01260 1.04050 0.85081 0.78402 0.79863 0.76487 1.18688 1.22255 1.22321 1.19770 0.91615 0.85337 1.40417 0.90215 1.42659 1.05371 1.01302 1.87506 1.21971 0.95624 0.83801 0.95336 1.23338 0.99892 0.96003 0.98543 1.22471 0.99436 0.92949 0.96494 1.21250 0.94865 0.91519 0.91077 1.45972 1.13916 1.34117 1.42102 1.20496 0.86547 0.80033 0.81410 1.90696 1.17320 1.70792 1.67167 1.22865 0.99786 0.95352 0.96687 1.21708 0.92865 0.89493 0.92502 1.92734 1.76368 1.71468 1.78513 1.22840 1.00992 0.92418 0.98512 1.22972 0.97274 0.98149 0.99004 1.22859 0.97281 0.94718 1.00798 1.23723 1.01174 0.95948 0.98488 0.94135 0.79694 0.90076 0.90347 0.91612 0.85895 0.93448 0.91734 0.74763 0.87850 0.89315 0.89790 0.88693 0.88200 0.90328 0.90613 0.90213 0.92612 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.94 13.06 21.65 0.28 -59.66 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.24 -13.08 9.97 84.03 0.84 -12.24 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.73 -36.27 5.40 -320.45 -1.73 -38.00 16 10 C 0.14 5.17 4.48 45.52 0.20 5.38 16 11 C -0.14 -4.06 7.39 31.12 0.23 -3.83 16 12 C -0.09 -2.13 3.76 -10.26 -0.04 -2.16 16 13 C 0.14 3.19 5.51 86.38 0.48 3.66 16 14 N -0.71 -13.15 5.44 -463.05 -2.52 -15.67 16 15 C 0.53 11.77 6.93 87.66 0.61 12.38 16 16 O -0.58 -18.44 15.90 -3.02 -0.05 -18.49 16 17 C -0.14 -2.28 1.26 -52.40 -0.07 -2.34 16 18 C 0.09 1.11 6.96 71.98 0.50 1.61 16 19 F -0.21 -3.08 14.57 44.97 0.66 -2.42 16 20 C -0.11 -1.43 6.96 31.12 0.22 -1.21 16 21 C -0.14 -1.79 7.56 31.11 0.24 -1.55 16 22 C -0.12 -2.03 6.97 31.11 0.22 -1.81 16 23 C -0.15 -4.55 7.43 31.12 0.23 -4.32 16 24 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 25 H 0.37 20.13 7.92 -92.71 -0.73 19.40 16 26 H 0.08 2.85 8.10 -2.38 -0.02 2.83 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 28 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 29 H 0.12 2.04 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.36 7.84 -2.39 -0.02 1.34 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.42 5.05 7.38 -92.71 -0.68 4.36 16 33 H 0.10 0.85 7.04 -2.39 -0.02 0.83 16 34 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 36 H 0.09 0.95 8.06 -2.39 -0.02 0.93 16 37 H 0.10 1.27 6.44 -2.38 -0.02 1.25 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 40 H 0.08 1.67 7.43 -2.39 -0.02 1.65 16 41 H 0.06 1.94 7.90 -2.39 -0.02 1.92 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -70.01 343.29 2.39 -67.62 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.39 Total: 29.38 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.12 Total: -10.60 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -3.97 Total: -113.33 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.49 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.66 Total: -2.42 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -70.01 2.39 -67.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100692234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.315 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds