Wall clock time and date at job start Tue Mar 31 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.46998 * 2 1 4 4 C 1.34227 * 116.99861 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00255 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00193 * 180.02562 * 4 3 2 7 7 N 1.46899 * 110.01374 * 324.13184 * 6 4 3 8 8 C 1.46897 * 110.99955 * 303.17573 * 7 6 4 9 9 C 1.50701 * 109.47367 * 175.72956 * 8 7 6 10 10 O 1.21297 * 119.99527 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00441 * 180.02562 * 9 8 7 12 12 C 1.37095 * 120.00033 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00411 * 359.97438 * 12 11 9 14 14 C 1.38952 * 119.99667 * 179.97438 * 12 11 9 15 15 N 1.31411 * 120.00139 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47111 * 90.00184 * 16 14 12 18 18 H 1.48498 * 109.46868 * 209.99919 * 16 14 12 19 19 H 1.48499 * 109.47052 * 330.00046 * 16 14 12 20 20 C 1.53873 * 110.03091 * 85.51834 * 6 4 3 21 21 C 1.54376 * 106.54748 * 119.34852 * 20 6 4 22 22 C 1.54892 * 104.21153 * 23.57540 * 21 20 6 23 23 C 1.54268 * 110.03588 * 202.73637 * 6 4 3 24 24 H 1.09001 * 109.46908 * 300.00319 * 1 2 3 25 25 H 1.09003 * 109.47057 * 59.99466 * 1 2 3 26 26 H 1.08997 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47046 * 240.00412 * 2 1 3 28 28 H 1.08995 * 109.47257 * 119.99916 * 2 1 3 29 29 H 1.00896 * 111.00053 * 67.13867 * 7 6 4 30 30 H 1.09004 * 109.47074 * 55.72932 * 8 7 6 31 31 H 1.09001 * 109.47152 * 295.73249 * 8 7 6 32 32 H 0.97000 * 119.99613 * 359.71504 * 11 9 8 33 33 H 0.97001 * 119.99761 * 180.02562 * 15 14 12 34 34 H 1.08996 * 110.03675 * 238.62176 * 20 6 4 35 35 H 1.09005 * 110.03725 * 0.05295 * 20 6 4 36 36 H 1.08998 * 110.46456 * 264.90301 * 21 20 6 37 37 H 1.08994 * 110.60581 * 142.32082 * 21 20 6 38 38 H 1.09005 * 110.75546 * 203.76207 * 22 21 20 39 39 H 1.09003 * 110.75697 * 80.39056 * 22 21 20 40 40 H 1.08994 * 110.48224 * 335.73580 * 23 6 4 41 41 H 1.09003 * 110.48279 * 98.37564 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 7 3.0789 3.8301 -0.8078 8 6 2.9364 3.3215 -2.1785 9 6 1.9849 4.2035 -2.9452 10 8 1.4760 5.1618 -2.4031 11 7 1.6994 3.9275 -4.2331 12 6 0.8342 4.7302 -4.9307 13 1 0.3810 5.5835 -4.4481 14 6 0.5403 4.4459 -6.2587 15 7 1.0921 3.4079 -6.8461 16 14 -0.6391 5.5392 -7.2090 17 1 0.1209 6.6305 -7.8698 18 1 -1.3421 4.7320 -8.2382 19 1 -1.6338 6.1243 -6.2743 20 6 4.0185 3.4668 1.4415 21 6 5.5131 3.7488 1.7059 22 6 6.1156 3.9605 0.2947 23 6 5.3577 2.9152 -0.5608 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.1769 3.9649 -0.3764 30 1 2.5458 2.3042 -2.1498 31 1 3.9094 3.3233 -2.6698 32 1 2.1096 3.1635 -4.6678 33 1 0.8872 3.2097 -7.7733 34 1 3.4414 4.3860 1.5417 35 1 3.6502 2.7161 2.1408 36 1 5.9810 2.8953 2.1963 37 1 5.6327 4.6478 2.3105 38 1 7.1860 3.7549 0.2969 39 1 5.9158 4.9706 -0.0631 40 1 5.8004 1.9271 -0.4364 41 1 5.3617 3.2066 -1.6112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116346582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:28 Heat of formation + Delta-G solvation = -131.504518 kcal Electronic energy + Delta-G solvation = -23383.221734 eV Core-core repulsion = 19876.707488 eV Total energy + Delta-G solvation = -3506.514247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99277 -38.55723 -37.84812 -36.44654 -34.28289 -33.58501 -31.70160 -31.22187 -29.17726 -28.39664 -25.90666 -24.00495 -23.85345 -22.13263 -20.89086 -19.50579 -19.08367 -17.89787 -17.79771 -16.95695 -16.61483 -16.09036 -15.29434 -14.89958 -14.65310 -14.45746 -14.13122 -13.92183 -13.55731 -13.45394 -13.13382 -12.90680 -12.37156 -12.05599 -11.94243 -11.85970 -11.66830 -11.56305 -11.26123 -11.22012 -11.08441 -11.04369 -10.96656 -10.75171 -10.57532 -10.39703 -10.35635 -10.21952 -9.51425 -8.51183 -8.23293 -7.97174 -6.41878 -3.82857 2.16468 2.60334 3.17874 3.26604 3.32328 3.88607 4.01534 4.26737 4.35349 4.46956 4.70238 4.85505 4.91283 5.03121 5.09633 5.17415 5.23912 5.29805 5.39243 5.53892 5.57672 5.62893 5.71279 5.72504 5.77398 5.81913 5.90967 5.94496 5.97983 6.03578 6.13854 6.26277 6.34920 6.45744 7.01143 7.53640 7.55099 7.74285 8.05118 8.59886 9.16956 9.53002 10.03851 10.75797 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.004598 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.432375 B = 6088.267537 C = 7003.214358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.437 3.563 5 O -0.511 6.511 6 C 0.126 3.874 7 N -0.636 5.636 8 C 0.042 3.958 9 C 0.445 3.555 10 O -0.582 6.582 11 N -0.562 5.562 12 C -0.299 4.299 13 H 0.104 0.896 14 C 0.023 3.977 15 N -0.901 5.901 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.112 4.112 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.362 0.638 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.392 0.608 33 H 0.272 0.728 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 -5.787 14.355 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.277 3.723 5 O -0.398 6.398 6 C 0.032 3.968 7 N -0.270 5.270 8 C -0.090 4.090 9 C 0.230 3.770 10 O -0.466 6.466 11 N -0.198 5.198 12 C -0.428 4.428 13 H 0.122 0.878 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.145 4.145 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.150 4.150 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.184 0.816 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.063 -5.108 14.355 16.399 hybrid contribution -0.993 -1.121 -0.808 1.702 sum 5.070 -6.229 13.547 15.749 Atomic orbital electron populations 1.21812 0.92442 1.02854 1.03961 1.23021 0.95640 0.80337 1.02260 1.86588 1.24604 1.32408 1.83520 1.25447 0.80723 0.94360 0.71736 1.90602 1.60400 1.43378 1.45398 1.21953 0.95350 0.82942 0.96550 1.60386 1.21047 1.44251 1.01345 1.21835 1.00480 0.96622 0.90063 1.19618 0.86191 0.87845 0.83342 1.90525 1.55957 1.31076 1.69082 1.41839 1.40994 1.27690 1.09294 1.19706 1.20727 1.09031 0.93379 0.87848 1.25267 0.98527 0.97145 0.96958 1.69618 1.44008 1.27196 1.13430 0.85854 0.80004 0.79357 0.79056 1.20367 1.20958 1.19399 1.22212 0.98560 1.01968 0.91806 1.22336 0.94202 1.01552 0.97668 1.22418 0.98845 0.99746 0.94293 1.22548 0.90733 1.00892 1.00803 0.91509 0.90962 0.90349 0.91272 0.91545 0.81643 0.93729 0.89220 0.77484 0.91861 0.88885 0.91618 0.91647 0.90985 0.91312 0.90316 0.89594 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.16 0.38 -1.21 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.35 -5.28 9.04 -39.25 -0.35 -5.64 16 4 C 0.44 6.65 5.24 36.01 0.19 6.84 16 5 O -0.51 -8.55 15.30 -18.75 -0.29 -8.84 16 6 C 0.13 1.75 0.82 -131.63 -0.11 1.64 16 7 N -0.64 -10.47 5.58 -101.25 -0.56 -11.04 16 8 C 0.04 0.78 5.56 -4.98 -0.03 0.75 16 9 C 0.44 10.57 7.81 -10.99 -0.09 10.48 16 10 O -0.58 -15.65 15.68 5.54 0.09 -15.57 16 11 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 12 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 13 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 16 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.11 -1.23 6.19 -25.56 -0.16 -1.39 16 21 C -0.12 -1.17 6.83 -25.01 -0.17 -1.35 16 22 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 23 C -0.11 -1.45 5.79 -25.07 -0.15 -1.60 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 28 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.36 6.25 8.02 -39.29 -0.32 5.93 16 30 H 0.04 0.81 6.35 -51.93 -0.33 0.48 16 31 H 0.09 1.54 6.34 -51.93 -0.33 1.21 16 32 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 33 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.09 1.05 7.88 -51.93 -0.41 0.64 16 35 H 0.07 0.71 7.67 -51.93 -0.40 0.31 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.14 6.80 -51.93 -0.35 0.79 16 41 H 0.08 1.13 6.06 -51.93 -0.31 0.82 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -31.51 337.35 -6.79 -38.29 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -6.09 Total: 14.18 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.31 Total: 5.78 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.10 Total: -49.29 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.55 Total: -30.04 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.51 -6.79 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116346582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.211 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds