Wall clock time and date at job start Tue Mar 31 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.46998 * 2 1 4 4 C 1.34227 * 116.99861 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00255 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00193 * 180.02562 * 4 3 2 7 7 N 1.46899 * 110.01374 * 324.13184 * 6 4 3 8 8 C 1.46897 * 110.99955 * 303.17573 * 7 6 4 9 9 C 1.50701 * 109.47367 * 175.72956 * 8 7 6 10 10 O 1.21297 * 119.99527 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00441 * 180.02562 * 9 8 7 12 12 C 1.37095 * 120.00033 * 180.02562 * 11 9 8 13 13 H 1.07998 * 120.00411 * 359.97438 * 12 11 9 14 14 C 1.38952 * 119.99667 * 179.97438 * 12 11 9 15 15 N 1.31411 * 120.00139 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47111 * 90.00184 * 16 14 12 18 18 H 1.48498 * 109.46868 * 209.99919 * 16 14 12 19 19 H 1.48499 * 109.47052 * 330.00046 * 16 14 12 20 20 C 1.53873 * 110.03091 * 85.51834 * 6 4 3 21 21 C 1.54376 * 106.54748 * 119.34852 * 20 6 4 22 22 C 1.54892 * 104.21153 * 23.57540 * 21 20 6 23 23 C 1.54268 * 110.03588 * 202.73637 * 6 4 3 24 24 H 1.09001 * 109.46908 * 300.00319 * 1 2 3 25 25 H 1.09003 * 109.47057 * 59.99466 * 1 2 3 26 26 H 1.08997 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47046 * 240.00412 * 2 1 3 28 28 H 1.08995 * 109.47257 * 119.99916 * 2 1 3 29 29 H 1.00896 * 111.00053 * 67.13867 * 7 6 4 30 30 H 1.09004 * 109.47074 * 55.72932 * 8 7 6 31 31 H 1.09001 * 109.47152 * 295.73249 * 8 7 6 32 32 H 0.97000 * 119.99613 * 359.71504 * 11 9 8 33 33 H 0.97001 * 119.99761 * 180.02562 * 15 14 12 34 34 H 1.08996 * 110.03675 * 238.62176 * 20 6 4 35 35 H 1.09005 * 110.03725 * 0.05295 * 20 6 4 36 36 H 1.08998 * 110.46456 * 264.90301 * 21 20 6 37 37 H 1.08994 * 110.60581 * 142.32082 * 21 20 6 38 38 H 1.09005 * 110.75546 * 203.76207 * 22 21 20 39 39 H 1.09003 * 110.75697 * 80.39056 * 22 21 20 40 40 H 1.08994 * 110.48224 * 335.73580 * 23 6 4 41 41 H 1.09003 * 110.48279 * 98.37564 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 7 3.0789 3.8301 -0.8078 8 6 2.9364 3.3215 -2.1785 9 6 1.9849 4.2035 -2.9452 10 8 1.4760 5.1618 -2.4031 11 7 1.6994 3.9275 -4.2331 12 6 0.8342 4.7302 -4.9307 13 1 0.3810 5.5835 -4.4481 14 6 0.5403 4.4459 -6.2587 15 7 1.0921 3.4079 -6.8461 16 14 -0.6391 5.5392 -7.2090 17 1 0.1209 6.6305 -7.8698 18 1 -1.3421 4.7320 -8.2382 19 1 -1.6338 6.1243 -6.2743 20 6 4.0185 3.4668 1.4415 21 6 5.5131 3.7488 1.7059 22 6 6.1156 3.9605 0.2947 23 6 5.3577 2.9152 -0.5608 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.1769 3.9649 -0.3764 30 1 2.5458 2.3042 -2.1498 31 1 3.9094 3.3233 -2.6698 32 1 2.1096 3.1635 -4.6678 33 1 0.8872 3.2097 -7.7733 34 1 3.4414 4.3860 1.5417 35 1 3.6502 2.7161 2.1408 36 1 5.9810 2.8953 2.1963 37 1 5.6327 4.6478 2.3105 38 1 7.1860 3.7549 0.2969 39 1 5.9158 4.9706 -0.0631 40 1 5.8004 1.9271 -0.4364 41 1 5.3617 3.2066 -1.6112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116346582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:28 Heat of formation + Delta-G solvation = -152.876185 kcal Electronic energy + Delta-G solvation = -23384.148479 eV Core-core repulsion = 19876.707488 eV Total energy + Delta-G solvation = -3507.440992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.16689 -40.20179 -39.19042 -37.65187 -36.09232 -35.06620 -33.28831 -32.66487 -30.27620 -29.51922 -27.57088 -25.65963 -24.93533 -23.16535 -21.90764 -21.03391 -20.45166 -19.89186 -19.07220 -18.15377 -17.80792 -17.52888 -16.87111 -16.30704 -16.18452 -15.88616 -15.57919 -15.24975 -15.07366 -14.62687 -14.19982 -14.09678 -13.71936 -13.55510 -13.45560 -13.08654 -12.98981 -12.89402 -12.62604 -12.44135 -12.33263 -12.11807 -12.10875 -12.03468 -11.90715 -11.82867 -11.62316 -11.51880 -11.32444 -10.40173 -10.04321 -9.65724 -8.47559 -5.96860 0.97217 1.38095 1.42421 1.52334 1.55457 1.99799 2.27531 2.73511 3.18739 3.31100 3.42657 3.47921 3.70586 3.90907 3.97797 4.10763 4.20568 4.25794 4.28114 4.35810 4.40204 4.51903 4.59677 4.73209 4.75725 4.82861 4.87074 4.97717 5.04482 5.06784 5.19977 5.23049 5.35791 5.40321 5.52191 5.67735 5.99083 6.16878 6.55435 6.57338 7.09839 7.51321 8.05298 8.69914 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.004598 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.432375 B = 6088.267537 C = 7003.214358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.437 3.563 5 O -0.529 6.529 6 C 0.124 3.876 7 N -0.637 5.637 8 C 0.059 3.941 9 C 0.444 3.556 10 O -0.615 6.615 11 N -0.571 5.571 12 C -0.333 4.333 13 H 0.082 0.918 14 C -0.012 4.012 15 N -0.921 5.921 16 Si 0.995 3.005 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.271 1.271 20 C -0.107 4.107 21 C -0.114 4.114 22 C -0.112 4.112 23 C -0.114 4.114 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.356 0.644 30 H 0.049 0.951 31 H 0.105 0.895 32 H 0.394 0.606 33 H 0.278 0.722 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -5.958 15.001 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.283 6.283 4 C 0.278 3.722 5 O -0.417 6.417 6 C 0.031 3.969 7 N -0.271 5.271 8 C -0.073 4.073 9 C 0.231 3.769 10 O -0.501 6.501 11 N -0.207 5.207 12 C -0.462 4.462 13 H 0.100 0.900 14 C -0.212 4.212 15 N -0.562 5.562 16 Si 0.818 3.182 17 H -0.196 1.196 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.145 4.145 21 C -0.151 4.151 22 C -0.149 4.149 23 C -0.152 4.152 24 H 0.091 0.909 25 H 0.072 0.928 26 H 0.123 0.877 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.177 0.823 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.228 0.772 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.444 -5.299 15.006 17.169 hybrid contribution -1.105 -1.120 -0.971 1.849 sum 5.339 -6.420 14.035 16.331 Atomic orbital electron populations 1.21826 0.90941 1.04412 1.03299 1.23275 0.96855 0.79296 1.02575 1.86592 1.24488 1.33949 1.83274 1.25649 0.80749 0.94589 0.71188 1.90589 1.60745 1.43965 1.46386 1.22175 0.95051 0.81968 0.97752 1.60412 1.20994 1.45087 1.00567 1.21632 0.99539 0.95328 0.90792 1.20453 0.85872 0.87688 0.82876 1.90494 1.57244 1.32730 1.69677 1.41906 1.41130 1.27699 1.09992 1.19696 1.22476 1.09601 0.94461 0.89958 1.26074 0.99649 0.98297 0.97188 1.69684 1.44551 1.28002 1.13951 0.84901 0.77864 0.77779 0.77640 1.19584 1.19628 1.19555 1.22271 1.00106 1.02038 0.90040 1.22350 0.92596 1.02851 0.97345 1.22421 0.99770 0.98449 0.94273 1.22583 0.90397 1.01567 1.00650 0.90858 0.92827 0.87701 0.91933 0.90253 0.82271 0.93333 0.87692 0.77203 0.91273 0.88786 0.90917 0.90667 0.89152 0.89407 0.91045 0.89814 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 10.29 71.98 0.74 -2.18 16 2 C 0.05 1.28 6.19 71.98 0.45 1.73 16 3 O -0.37 -10.77 9.04 -51.39 -0.46 -11.24 16 4 C 0.44 13.00 5.24 71.24 0.37 13.37 16 5 O -0.53 -17.29 15.30 21.95 0.34 -16.95 16 6 C 0.12 3.33 0.82 3.51 0.00 3.34 16 7 N -0.64 -20.80 5.58 -474.25 -2.65 -23.45 16 8 C 0.06 2.19 5.56 85.56 0.48 2.67 16 9 C 0.44 21.49 7.81 87.66 0.68 22.17 16 10 O -0.62 -33.83 15.68 -3.08 -0.05 -33.88 16 11 N -0.57 -29.75 5.29 -306.98 -1.62 -31.38 16 12 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 13 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 14 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 15 N -0.92 -50.01 13.05 21.66 0.28 -49.72 16 16 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 C -0.11 -2.26 6.19 31.36 0.19 -2.07 16 21 C -0.11 -1.93 6.83 31.71 0.22 -1.72 16 22 C -0.11 -2.16 6.91 31.89 0.22 -1.94 16 23 C -0.11 -2.83 5.79 31.67 0.18 -2.64 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 28 H 0.08 1.69 8.13 -2.39 -0.02 1.67 16 29 H 0.36 12.35 8.02 -89.70 -0.72 11.63 16 30 H 0.05 1.77 6.35 -2.39 -0.02 1.76 16 31 H 0.11 3.58 6.34 -2.39 -0.02 3.57 16 32 H 0.39 19.82 7.90 -92.71 -0.73 19.09 16 33 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.09 1.99 7.88 -2.39 -0.02 1.97 16 35 H 0.07 1.44 7.67 -2.38 -0.02 1.42 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 2.12 6.80 -2.39 -0.02 2.11 16 41 H 0.07 1.92 6.06 -2.39 -0.01 1.91 16 Total: -1.00 -67.37 337.35 2.29 -65.08 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -0.40 Total: 42.30 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 4.82 Total: 14.41 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -3.99 Total: -104.55 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -0.18 Total: -62.07 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -67.37 2.29 -65.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116346582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.794 kcal (2) G-P(sol) polarization free energy of solvation -67.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds