Wall clock time and date at job start Tue Mar 31 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99739 * 2 1 4 4 C 1.52997 * 113.28377 * 313.06885 * 3 2 1 5 5 C 1.53503 * 114.20806 * 179.97438 * 3 2 1 6 6 N 1.47070 * 87.98412 * 220.34790 * 5 3 2 7 7 C 1.34777 * 136.05208 * 207.08772 * 6 5 3 8 8 O 1.21343 * 120.00423 * 359.97438 * 7 6 5 9 9 C 1.49452 * 119.99621 * 179.97438 * 7 6 5 10 10 O 1.21343 * 119.99953 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99622 * 179.97438 * 9 7 6 12 12 C 1.46499 * 119.99665 * 179.72283 * 11 9 7 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00298 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47136 * 89.99860 * 19 17 15 21 21 H 1.48503 * 109.47098 * 209.99926 * 19 17 15 22 22 H 1.48504 * 109.46915 * 329.99781 * 19 17 15 23 23 C 1.47062 * 87.88678 * 27.34287 * 6 5 3 24 24 H 1.08995 * 109.47213 * 59.99954 * 1 2 3 25 25 H 1.09008 * 109.46492 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47301 * 299.99613 * 1 2 3 27 27 H 1.09000 * 109.47110 * 286.93128 * 4 3 2 28 28 H 1.08995 * 109.47337 * 46.93126 * 4 3 2 29 29 H 1.08997 * 109.47239 * 166.93681 * 4 3 2 30 30 H 1.08996 * 113.46602 * 105.56687 * 5 3 2 31 31 H 1.09004 * 113.46458 * 335.12466 * 5 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 11 9 7 33 33 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 34 34 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 35 35 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 36 36 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 37 37 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 38 38 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 39 39 H 0.96997 * 120.00401 * 179.97438 * 18 17 15 40 40 H 1.08998 * 113.46736 * 87.43864 * 23 6 5 41 41 H 1.08998 * 113.46585 * 217.88283 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.3793 2.2483 -1.0267 5 6 3.5451 1.3111 0.0006 6 7 3.4889 2.4313 0.9520 7 6 4.2831 3.4714 1.2743 8 8 5.3411 3.6275 0.7010 9 6 3.8605 4.4326 2.3379 10 8 2.8023 4.2767 2.9109 11 7 4.6549 5.4724 2.6606 12 6 4.2380 6.4181 3.6990 13 6 5.3084 7.4988 3.8642 14 6 4.8726 8.4867 4.9481 15 6 5.9272 9.5508 5.1113 16 1 6.8188 9.5252 4.5025 17 6 5.7538 10.5570 6.0379 18 7 6.6738 11.4859 6.1799 19 14 4.2119 10.6008 7.0915 20 1 4.4432 9.8303 8.3397 21 1 3.8850 12.0088 7.4322 22 1 3.0816 9.9982 6.3400 23 6 2.1879 1.9133 1.4012 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7001 1.9618 -2.0282 28 1 0.2933 2.1834 -0.9605 29 1 1.6953 3.2713 -0.8228 30 1 3.9786 1.5809 -0.9624 31 1 3.9823 0.4057 0.4216 32 1 5.5007 5.5972 2.2024 33 1 3.2947 6.8821 3.4103 34 1 4.1083 5.8879 4.6424 35 1 6.2515 7.0348 4.1528 36 1 5.4380 8.0291 2.9207 37 1 3.9296 8.9506 4.6591 38 1 4.7427 7.9567 5.8918 39 1 6.5517 12.1939 6.8315 40 1 2.2674 1.1666 2.1913 41 1 1.4651 2.6960 1.6312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117265515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:30 Heat of formation + Delta-G solvation = -75.331104 kcal Electronic energy + Delta-G solvation = -21995.427669 eV Core-core repulsion = 18491.349285 eV Total energy + Delta-G solvation = -3504.078384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38408 -39.87857 -38.27709 -36.88700 -35.70093 -33.37349 -31.50452 -31.08824 -28.64282 -27.65753 -26.91051 -26.51764 -24.13727 -22.24459 -20.83796 -20.38363 -19.30453 -18.12406 -17.51649 -17.05365 -16.73860 -16.03781 -15.88572 -15.81334 -15.42553 -14.87679 -14.55930 -14.15161 -14.02320 -13.90728 -13.49063 -13.41331 -12.78353 -12.74013 -12.55742 -12.31002 -12.10482 -11.99996 -11.97125 -11.61812 -11.13452 -11.01719 -10.93603 -10.26585 -10.12043 -9.97347 -9.79305 -9.51240 -9.25718 -9.24646 -9.08593 -8.57538 -6.07800 -4.06895 1.31325 1.91921 3.05064 3.17141 3.29282 3.31136 3.36999 3.40214 3.74939 4.09772 4.29751 4.42266 4.46174 4.84221 4.90913 4.93696 5.05011 5.09240 5.15249 5.24246 5.25761 5.29565 5.32661 5.37873 5.41249 5.54178 5.60122 5.90423 6.12713 6.36651 6.52368 6.62686 6.71899 7.04555 7.15566 7.18888 7.31576 7.58444 7.73253 7.95310 8.48476 8.96255 9.53885 11.05398 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037147 B = 0.002616 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.584875 B =10701.157942 C =11199.170652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.364 6.364 3 C 0.069 3.931 4 C -0.158 4.158 5 C 0.122 3.878 6 N -0.619 5.619 7 C 0.541 3.459 8 O -0.515 6.515 9 C 0.507 3.493 10 O -0.522 6.522 11 N -0.691 5.691 12 C 0.113 3.887 13 C -0.115 4.115 14 C -0.010 4.010 15 C -0.523 4.523 16 H 0.073 0.927 17 C 0.066 3.934 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.086 3.914 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.264 0.736 40 H 0.097 0.903 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.839 -23.417 -14.020 30.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.282 6.282 3 C 0.029 3.971 4 C -0.215 4.215 5 C -0.001 4.001 6 N -0.357 5.357 7 C 0.326 3.674 8 O -0.390 6.390 9 C 0.286 3.714 10 O -0.399 6.399 11 N -0.343 5.343 12 C -0.010 4.010 13 C -0.153 4.153 14 C -0.048 4.048 15 C -0.561 4.561 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.037 4.037 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.720 -23.227 -13.741 29.835 hybrid contribution -0.476 0.384 0.555 0.826 sum -13.196 -22.843 -13.187 29.493 Atomic orbital electron populations 1.22848 0.80493 1.03093 1.00681 1.87944 1.20358 1.25195 1.94709 1.23185 0.93958 0.84660 0.95344 1.21996 1.01558 0.99412 0.98511 1.23098 0.93539 0.89141 0.94291 1.48797 1.22480 1.24560 1.39836 1.19835 0.82973 0.81027 0.83588 1.90785 1.21854 1.73594 1.52797 1.19821 0.85092 0.82620 0.83849 1.90734 1.22602 1.73717 1.52807 1.46017 1.23221 1.25698 1.39399 1.21853 0.99635 0.89880 0.89586 1.21747 0.96840 0.95297 1.01448 1.19502 0.97545 0.94361 0.93400 1.21087 1.05368 1.08300 1.21331 0.90927 1.25034 0.96354 0.95271 0.96849 1.69910 1.34280 1.14204 1.35680 0.86769 0.84217 0.77221 0.81032 1.20246 1.21359 1.18925 1.23841 0.84320 0.98319 0.97220 0.93242 0.89254 0.93495 0.90770 0.90863 0.90631 0.89052 0.88194 0.75121 0.91108 0.91100 0.91780 0.91766 0.96246 0.96681 0.92667 0.88508 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.36 101.05 1.05 1.17 16 2 O -0.36 -2.72 10.71 -35.23 -0.38 -3.10 16 3 C 0.07 0.52 1.56 -89.96 -0.14 0.38 16 4 C -0.16 -1.00 8.97 37.16 0.33 -0.67 16 5 C 0.12 1.02 8.04 -8.50 -0.07 0.95 16 6 N -0.62 -6.84 3.50 -185.53 -0.65 -7.49 16 7 C 0.54 7.42 8.14 -11.58 -0.09 7.33 16 8 O -0.52 -8.04 17.25 5.50 0.09 -7.94 16 9 C 0.51 7.47 7.89 -11.58 -0.09 7.38 16 10 O -0.52 -8.49 15.19 5.50 0.08 -8.41 16 11 N -0.69 -10.03 5.55 -60.73 -0.34 -10.37 16 12 C 0.11 1.80 5.67 -4.04 -0.02 1.78 16 13 C -0.12 -2.13 5.27 -26.73 -0.14 -2.27 16 14 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 15 C -0.52 -14.65 9.66 -34.44 -0.33 -14.99 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 19 Si 0.88 21.51 27.47 -169.99 -4.67 16.85 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 23 C 0.09 0.78 7.03 -8.37 -0.06 0.72 16 24 H 0.05 0.20 6.36 -51.93 -0.33 -0.13 16 25 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 26 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.37 6.12 -51.93 -0.32 0.05 16 29 H 0.07 0.57 7.94 -51.93 -0.41 0.16 16 30 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.41 5.53 7.94 -40.82 -0.32 5.21 16 33 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.92 7.36 -51.93 -0.38 0.54 16 LS Contribution 344.65 15.07 5.19 5.19 Total: -1.00 -33.09 344.65 -6.01 -39.10 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.35 Total: -0.20 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 0.22 Total: 3.26 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.21 Total: -44.75 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.20 Total: -19.45 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.09 -6.01 -39.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117265515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.233 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds