Wall clock time and date at job start Tue Mar 31 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99739 * 2 1 4 4 C 1.52997 * 113.28377 * 313.06885 * 3 2 1 5 5 C 1.53503 * 114.20806 * 179.97438 * 3 2 1 6 6 N 1.47070 * 87.98412 * 220.34790 * 5 3 2 7 7 C 1.34777 * 136.05208 * 207.08772 * 6 5 3 8 8 O 1.21343 * 120.00423 * 359.97438 * 7 6 5 9 9 C 1.49452 * 119.99621 * 179.97438 * 7 6 5 10 10 O 1.21343 * 119.99953 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99622 * 179.97438 * 9 7 6 12 12 C 1.46499 * 119.99665 * 179.72283 * 11 9 7 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00298 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47136 * 89.99860 * 19 17 15 21 21 H 1.48503 * 109.47098 * 209.99926 * 19 17 15 22 22 H 1.48504 * 109.46915 * 329.99781 * 19 17 15 23 23 C 1.47062 * 87.88678 * 27.34287 * 6 5 3 24 24 H 1.08995 * 109.47213 * 59.99954 * 1 2 3 25 25 H 1.09008 * 109.46492 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47301 * 299.99613 * 1 2 3 27 27 H 1.09000 * 109.47110 * 286.93128 * 4 3 2 28 28 H 1.08995 * 109.47337 * 46.93126 * 4 3 2 29 29 H 1.08997 * 109.47239 * 166.93681 * 4 3 2 30 30 H 1.08996 * 113.46602 * 105.56687 * 5 3 2 31 31 H 1.09004 * 113.46458 * 335.12466 * 5 3 2 32 32 H 0.97001 * 120.00485 * 0.02562 * 11 9 7 33 33 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 34 34 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 35 35 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 36 36 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 37 37 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 38 38 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 39 39 H 0.96997 * 120.00401 * 179.97438 * 18 17 15 40 40 H 1.08998 * 113.46736 * 87.43864 * 23 6 5 41 41 H 1.08998 * 113.46585 * 217.88283 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.3793 2.2483 -1.0267 5 6 3.5451 1.3111 0.0006 6 7 3.4889 2.4313 0.9520 7 6 4.2831 3.4714 1.2743 8 8 5.3411 3.6275 0.7010 9 6 3.8605 4.4326 2.3379 10 8 2.8023 4.2767 2.9109 11 7 4.6549 5.4724 2.6606 12 6 4.2380 6.4181 3.6990 13 6 5.3084 7.4988 3.8642 14 6 4.8726 8.4867 4.9481 15 6 5.9272 9.5508 5.1113 16 1 6.8188 9.5252 4.5025 17 6 5.7538 10.5570 6.0379 18 7 6.6738 11.4859 6.1799 19 14 4.2119 10.6008 7.0915 20 1 4.4432 9.8303 8.3397 21 1 3.8850 12.0088 7.4322 22 1 3.0816 9.9982 6.3400 23 6 2.1879 1.9133 1.4012 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.7001 1.9618 -2.0282 28 1 0.2933 2.1834 -0.9605 29 1 1.6953 3.2713 -0.8228 30 1 3.9786 1.5809 -0.9624 31 1 3.9823 0.4057 0.4216 32 1 5.5007 5.5972 2.2024 33 1 3.2947 6.8821 3.4103 34 1 4.1083 5.8879 4.6424 35 1 6.2515 7.0348 4.1528 36 1 5.4380 8.0291 2.9207 37 1 3.9296 8.9506 4.6591 38 1 4.7427 7.9567 5.8918 39 1 6.5517 12.1939 6.8315 40 1 2.2674 1.1666 2.1913 41 1 1.4651 2.6960 1.6312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117265515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:30 Heat of formation + Delta-G solvation = -100.271445 kcal Electronic energy + Delta-G solvation = -21996.509164 eV Core-core repulsion = 18491.349285 eV Total energy + Delta-G solvation = -3505.159879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24120 -40.86603 -39.31810 -37.61105 -37.06847 -35.20266 -33.32981 -31.81637 -29.55556 -28.97654 -27.57123 -27.24486 -25.53040 -23.59287 -22.30687 -21.37501 -20.28107 -19.15567 -18.79225 -18.39750 -17.91684 -17.09506 -16.89349 -16.52643 -16.29531 -16.11342 -16.01638 -15.45336 -15.11563 -14.78373 -14.52028 -14.42872 -14.30890 -13.82890 -13.65698 -13.33745 -13.10234 -13.04841 -12.79284 -12.72670 -12.69645 -12.30624 -11.92030 -11.79244 -11.61800 -11.56766 -11.34452 -10.92025 -10.75926 -10.53535 -10.34368 -10.06193 -8.28744 -6.33372 0.21259 0.96217 1.38288 1.39788 1.51635 1.99888 2.20943 2.37184 2.66238 3.06884 3.09767 3.20863 3.53688 3.86445 3.99362 4.14869 4.15391 4.41373 4.43158 4.46014 4.50685 4.55035 4.62785 4.66040 4.72385 4.77410 4.79167 4.84597 4.93485 5.00436 5.14402 5.14866 5.45035 5.54240 5.64475 5.98573 6.12759 6.18692 6.27497 6.51583 6.74954 6.82393 7.31333 8.87822 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037147 B = 0.002616 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.584875 B =10701.157942 C =11199.170652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.375 6.375 3 C 0.085 3.915 4 C -0.157 4.157 5 C 0.116 3.884 6 N -0.619 5.619 7 C 0.541 3.459 8 O -0.542 6.542 9 C 0.508 3.492 10 O -0.538 6.538 11 N -0.688 5.688 12 C 0.126 3.874 13 C -0.105 4.105 14 C -0.010 4.010 15 C -0.533 4.533 16 H 0.034 0.966 17 C 0.001 3.999 18 N -0.952 5.952 19 Si 0.951 3.049 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.243 1.243 23 C 0.082 3.918 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.418 0.582 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.024 0.976 39 H 0.266 0.734 40 H 0.104 0.896 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.177 -25.263 -14.319 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.293 6.293 3 C 0.043 3.957 4 C -0.214 4.214 5 C -0.005 4.005 6 N -0.355 5.355 7 C 0.325 3.675 8 O -0.419 6.419 9 C 0.288 3.712 10 O -0.415 6.415 11 N -0.341 5.341 12 C 0.003 3.997 13 C -0.143 4.143 14 C -0.048 4.048 15 C -0.571 4.571 16 H 0.052 0.948 17 C -0.195 4.195 18 N -0.593 5.593 19 Si 0.775 3.225 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.166 1.166 23 C -0.041 4.041 24 H 0.079 0.921 25 H 0.121 0.879 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.255 0.745 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.084 -25.121 -14.065 32.502 hybrid contribution 0.272 0.890 0.586 1.100 sum -14.812 -24.231 -13.479 31.436 Atomic orbital electron populations 1.23059 0.79086 1.04291 1.01408 1.87933 1.21885 1.24794 1.94702 1.22998 0.93343 0.84970 0.94339 1.22007 1.02488 0.98232 0.98631 1.23335 0.94684 0.88450 0.94071 1.48893 1.22605 1.24142 1.39831 1.19535 0.82986 0.81592 0.83345 1.90772 1.22925 1.74469 1.53765 1.20018 0.84702 0.82576 0.83865 1.90722 1.23212 1.74149 1.53455 1.45896 1.23527 1.25527 1.39107 1.21561 0.98533 0.89385 0.90207 1.21527 0.97592 0.95188 0.99965 1.19456 0.96069 0.93965 0.95332 1.21474 1.05414 1.09792 1.20411 0.94770 1.26046 1.00084 0.94828 0.98558 1.70070 1.36851 1.15333 1.37005 0.85641 0.80158 0.77475 0.79275 1.19224 1.21203 1.16636 1.24017 0.83146 0.98254 0.98654 0.92107 0.87933 0.93171 0.89749 0.89388 0.91985 0.88405 0.87086 0.74489 0.90808 0.90851 0.91857 0.91803 0.95584 0.95771 0.92525 0.87828 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.36 113.37 1.17 1.30 16 2 O -0.38 -4.74 10.71 -148.98 -1.60 -6.34 16 3 C 0.08 1.10 1.56 -10.37 -0.02 1.08 16 4 C -0.16 -1.67 8.97 71.98 0.65 -1.02 16 5 C 0.12 1.75 8.04 83.18 0.67 2.42 16 6 N -0.62 -12.94 3.50 -859.73 -3.01 -15.95 16 7 C 0.54 14.43 8.14 87.27 0.71 15.14 16 8 O -0.54 -16.64 17.25 -3.22 -0.06 -16.69 16 9 C 0.51 14.47 7.89 87.27 0.69 15.16 16 10 O -0.54 -16.80 15.19 -3.23 -0.05 -16.85 16 11 N -0.69 -19.22 5.55 -464.40 -2.58 -21.80 16 12 C 0.13 3.82 5.67 86.38 0.49 4.31 16 13 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 14 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 15 C -0.53 -30.25 9.66 25.60 0.25 -30.00 16 16 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 17 C 0.00 0.09 5.47 84.65 0.46 0.55 16 18 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 19 Si 0.95 43.78 27.47 68.60 1.88 45.67 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.24 -10.26 6.54 99.48 0.65 -9.60 16 23 C 0.08 1.36 7.03 83.27 0.59 1.94 16 24 H 0.06 0.31 6.36 -2.39 -0.02 0.30 16 25 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 0.67 6.12 -2.39 -0.01 0.66 16 29 H 0.06 0.85 7.94 -2.39 -0.02 0.83 16 30 H 0.10 1.37 8.12 -2.39 -0.02 1.35 16 31 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.42 10.89 7.94 -92.71 -0.74 10.16 16 33 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.03 1.13 7.20 -2.39 -0.02 1.12 16 38 H 0.02 1.04 7.57 -2.38 -0.02 1.02 16 39 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 1.61 7.36 -2.39 -0.02 1.60 16 Total: -1.00 -71.16 344.65 1.08 -70.08 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.24 Total: 14.35 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.94 Total: 6.93 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -5.28 Total: -97.14 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -1.70 Total: -39.89 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.67 kcal Total: -71.16 1.08 -70.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117265515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.188 kcal (2) G-P(sol) polarization free energy of solvation -71.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds