Wall clock time and date at job start Tue Mar 31 2020 05:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99962 * 2 1 4 4 H 1.48510 * 109.47092 * 239.99867 * 3 2 1 5 5 H 1.48505 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47406 * 119.99921 * 3 2 1 7 7 C 1.37880 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00003 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46753 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46738 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46982 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46995 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99937 * 359.97438 * 13 12 11 15 15 N 1.34770 * 119.99787 * 180.02562 * 13 12 11 16 16 C 1.47156 * 120.98466 * 359.97438 * 15 13 12 17 17 C 1.53296 * 108.38233 * 230.26449 * 16 15 13 18 18 O 1.42957 * 109.22402 * 307.69209 * 17 16 15 19 19 C 1.42962 * 114.16142 * 62.58700 * 18 17 16 20 20 H 1.09001 * 109.51757 * 57.34281 * 19 18 17 21 21 C 1.50709 * 109.50998 * 177.44165 * 19 18 17 22 22 N 1.34775 * 120.00030 * 185.00023 * 21 19 18 23 23 O 1.21276 * 119.99668 * 4.99826 * 21 19 18 24 24 C 1.47151 * 120.98286 * 179.71529 * 15 13 12 25 25 H 0.97002 * 120.00141 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46910 * 59.99915 * 9 7 2 27 27 H 1.08992 * 109.47045 * 299.99714 * 9 7 2 28 28 H 1.09002 * 109.47140 * 60.00474 * 10 9 7 29 29 H 1.08998 * 109.47710 * 300.00247 * 10 9 7 30 30 H 1.09002 * 109.47499 * 60.00512 * 11 10 9 31 31 H 1.09007 * 109.47437 * 299.99958 * 11 10 9 32 32 H 1.09002 * 109.47341 * 60.00069 * 12 11 10 33 33 H 1.09001 * 109.46422 * 299.99664 * 12 11 10 34 34 H 1.09002 * 109.67563 * 349.98862 * 16 15 13 35 35 H 1.08998 * 109.67968 * 110.50341 * 16 15 13 36 36 H 1.09004 * 109.51110 * 67.62426 * 17 16 15 37 37 H 1.09002 * 109.50509 * 187.76878 * 17 16 15 38 38 H 0.97003 * 120.00176 * 359.97438 * 22 21 19 39 39 H 0.97001 * 120.00055 * 180.02562 * 22 21 19 40 40 H 1.08998 * 109.68184 * 249.46000 * 24 15 13 41 41 H 1.09003 * 109.67897 * 10.00956 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4745 -6.1501 0.0005 13 6 1.7210 -7.4552 -0.0007 14 8 0.5082 -7.4551 -0.0016 15 7 2.3949 -8.6223 0.0001 16 6 3.8662 -8.6476 0.0017 17 6 4.3348 -9.5858 -1.1165 18 8 3.6781 -10.8480 -0.9779 19 6 2.2562 -10.7858 -1.1127 20 1 2.0007 -10.3551 -2.0809 21 6 1.6798 -12.1746 -1.0118 22 7 0.3618 -12.3734 -1.2113 23 8 2.4020 -13.1134 -0.7511 24 6 1.6811 -9.9091 0.0051 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6044 0.8906 29 1 2.8720 -3.6044 -0.8894 30 1 0.8539 -5.0447 -0.8904 31 1 0.8532 -5.0451 0.8897 32 1 3.1006 -6.0924 0.8910 33 1 3.1017 -6.0922 -0.8891 34 1 4.2507 -7.6433 -0.1765 35 1 4.2260 -9.0132 0.9634 36 1 4.0869 -9.1506 -2.0846 37 1 5.4133 -9.7267 -1.0452 38 1 -0.2159 -11.6225 -1.4195 39 1 -0.0092 -13.2672 -1.1460 40 1 1.8207 -10.4025 0.9670 41 1 0.6187 -9.7403 -0.1706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117409262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:03 Heat of formation + Delta-G solvation = -133.382810 kcal Electronic energy + Delta-G solvation = -22146.287971 eV Core-core repulsion = 18639.692276 eV Total energy + Delta-G solvation = -3506.595695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.97117 -39.65089 -38.29505 -35.16722 -34.96536 -34.24315 -32.74196 -31.94616 -29.89843 -28.34014 -26.16923 -24.82806 -23.30633 -22.06036 -20.97266 -20.09031 -19.34386 -18.21374 -17.59634 -17.10463 -16.51256 -16.28968 -16.14414 -15.94325 -15.60281 -15.02166 -14.57881 -14.51540 -14.41833 -13.99623 -13.45899 -13.23442 -12.83081 -12.49569 -12.29126 -12.08891 -11.68914 -11.61772 -11.35970 -11.00436 -10.67423 -10.58265 -10.56598 -10.44699 -10.36233 -10.16794 -9.90116 -9.65451 -9.26801 -9.02761 -8.94813 -8.32694 -5.97574 -4.00298 2.05500 2.49175 2.54371 2.57100 3.33507 3.38128 3.40139 3.63234 4.12089 4.31371 4.32086 4.46117 4.49763 4.54586 4.69946 4.82684 5.02696 5.14638 5.21622 5.25549 5.28064 5.37780 5.40338 5.74155 5.97948 6.06607 6.23522 6.24666 6.48286 6.49160 6.77971 6.83370 6.93787 7.04895 7.16748 7.70818 7.76984 7.86513 7.99273 8.03499 8.44972 9.07158 9.63447 11.13721 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041983 B = 0.002525 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.780900 B =11085.761139 C =11583.879033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.518 3.482 14 O -0.530 6.530 15 N -0.624 5.624 16 C 0.070 3.930 17 C 0.046 3.954 18 O -0.352 6.352 19 C 0.059 3.941 20 H 0.091 0.909 21 C 0.529 3.471 22 N -0.850 5.850 23 O -0.518 6.518 24 C 0.090 3.910 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.405 0.595 39 H 0.408 0.592 40 H 0.080 0.920 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 -23.368 -2.715 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.177 4.177 13 C 0.308 3.692 14 O -0.405 6.405 15 N -0.360 5.360 16 C -0.053 4.053 17 C -0.031 4.031 18 O -0.269 6.269 19 C -0.003 4.003 20 H 0.109 0.891 21 C 0.311 3.689 22 N -0.416 5.416 23 O -0.392 6.392 24 C -0.034 4.034 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.234 0.766 39 H 0.240 0.760 40 H 0.098 0.902 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.363 -23.879 -2.496 24.601 hybrid contribution -0.050 1.195 -0.127 1.203 sum 5.312 -22.684 -2.623 23.445 Atomic orbital electron populations 1.69960 1.06061 1.26664 1.50794 1.25040 0.94844 0.99240 0.95422 0.86669 0.79579 0.83230 0.78560 1.20279 1.21312 1.20268 1.21241 0.92937 0.91196 1.50611 0.92805 1.19088 0.94039 0.91248 0.97307 1.21649 0.99097 0.93927 1.00097 1.21480 0.96999 0.92674 1.03020 1.21846 1.00220 0.91663 1.03984 1.21211 0.88245 0.85153 0.74551 1.90701 1.14059 1.87043 1.48736 1.48235 1.06813 1.05446 1.75552 1.22526 0.79902 1.02366 1.00554 1.23126 0.98376 0.83917 0.97722 1.88088 1.16070 1.29547 1.93210 1.22274 0.84312 0.93526 1.00202 0.89109 1.19941 0.82540 0.89960 0.76419 1.43750 1.08725 1.14189 1.74944 1.90788 1.59083 1.43383 1.45964 1.22052 0.98799 0.83945 0.98608 0.92961 0.96609 0.96589 0.93430 0.93456 0.91753 0.91732 0.88905 0.88996 0.87741 0.90052 0.92032 0.86672 0.76621 0.76040 0.90207 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.18 5.15 -26.73 -0.14 -2.32 16 11 C -0.10 -1.76 4.50 -26.73 -0.12 -1.88 16 12 C -0.14 -1.68 4.07 -27.88 -0.11 -1.79 16 13 C 0.52 6.68 7.71 -10.99 -0.08 6.60 16 14 O -0.53 -8.78 15.45 5.56 0.09 -8.69 16 15 N -0.62 -6.16 3.02 -172.29 -0.52 -6.68 16 16 C 0.07 0.49 6.54 -3.53 -0.02 0.47 16 17 C 0.05 0.31 6.98 37.31 0.26 0.57 16 18 O -0.35 -3.56 9.92 -55.06 -0.55 -4.10 16 19 C 0.06 0.51 3.19 -27.74 -0.09 0.42 16 20 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 21 C 0.53 4.94 7.45 -10.98 -0.08 4.86 16 22 N -0.85 -4.40 8.84 31.22 0.28 -4.12 16 23 O -0.52 -7.19 17.35 -14.27 -0.25 -7.44 16 24 C 0.09 0.81 5.89 -3.55 -0.02 0.79 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.09 0.98 8.02 -51.93 -0.42 0.56 16 33 H 0.09 0.93 7.65 -51.93 -0.40 0.53 16 34 H 0.10 0.58 6.06 -51.93 -0.31 0.26 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.40 1.19 8.83 -40.82 -0.36 0.83 16 39 H 0.41 1.64 8.93 -40.82 -0.36 1.27 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.11 0.95 7.08 -51.93 -0.37 0.58 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -37.22 341.85 -7.45 -44.67 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -6.41 Total: -3.41 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -0.96 Total: -5.50 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.49 Total: -37.30 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.71 Total: -20.24 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.22 -7.45 -44.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117409262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.709 kcal (2) G-P(sol) polarization free energy of solvation -37.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds