Wall clock time and date at job start Tue Mar 31 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99962 * 2 1 4 4 H 1.48510 * 109.47092 * 239.99867 * 3 2 1 5 5 H 1.48505 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47406 * 119.99921 * 3 2 1 7 7 C 1.37880 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00003 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46753 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46738 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46982 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46995 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99937 * 359.97438 * 13 12 11 15 15 N 1.34770 * 119.99787 * 180.02562 * 13 12 11 16 16 C 1.47156 * 120.98466 * 359.97438 * 15 13 12 17 17 C 1.53296 * 108.38233 * 230.26449 * 16 15 13 18 18 O 1.42957 * 109.22402 * 307.69209 * 17 16 15 19 19 C 1.42962 * 114.16142 * 62.58700 * 18 17 16 20 20 H 1.09001 * 109.51757 * 57.34281 * 19 18 17 21 21 C 1.50709 * 109.50998 * 177.44165 * 19 18 17 22 22 N 1.34775 * 120.00030 * 185.00023 * 21 19 18 23 23 O 1.21276 * 119.99668 * 4.99826 * 21 19 18 24 24 C 1.47151 * 120.98286 * 179.71529 * 15 13 12 25 25 H 0.97002 * 120.00141 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46910 * 59.99915 * 9 7 2 27 27 H 1.08992 * 109.47045 * 299.99714 * 9 7 2 28 28 H 1.09002 * 109.47140 * 60.00474 * 10 9 7 29 29 H 1.08998 * 109.47710 * 300.00247 * 10 9 7 30 30 H 1.09002 * 109.47499 * 60.00512 * 11 10 9 31 31 H 1.09007 * 109.47437 * 299.99958 * 11 10 9 32 32 H 1.09002 * 109.47341 * 60.00069 * 12 11 10 33 33 H 1.09001 * 109.46422 * 299.99664 * 12 11 10 34 34 H 1.09002 * 109.67563 * 349.98862 * 16 15 13 35 35 H 1.08998 * 109.67968 * 110.50341 * 16 15 13 36 36 H 1.09004 * 109.51110 * 67.62426 * 17 16 15 37 37 H 1.09002 * 109.50509 * 187.76878 * 17 16 15 38 38 H 0.97003 * 120.00176 * 359.97438 * 22 21 19 39 39 H 0.97001 * 120.00055 * 180.02562 * 22 21 19 40 40 H 1.08998 * 109.68184 * 249.46000 * 24 15 13 41 41 H 1.09003 * 109.67897 * 10.00956 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4745 -6.1501 0.0005 13 6 1.7210 -7.4552 -0.0007 14 8 0.5082 -7.4551 -0.0016 15 7 2.3949 -8.6223 0.0001 16 6 3.8662 -8.6476 0.0017 17 6 4.3348 -9.5858 -1.1165 18 8 3.6781 -10.8480 -0.9779 19 6 2.2562 -10.7858 -1.1127 20 1 2.0007 -10.3551 -2.0809 21 6 1.6798 -12.1746 -1.0118 22 7 0.3618 -12.3734 -1.2113 23 8 2.4020 -13.1134 -0.7511 24 6 1.6811 -9.9091 0.0051 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6044 0.8906 29 1 2.8720 -3.6044 -0.8894 30 1 0.8539 -5.0447 -0.8904 31 1 0.8532 -5.0451 0.8897 32 1 3.1006 -6.0924 0.8910 33 1 3.1017 -6.0922 -0.8891 34 1 4.2507 -7.6433 -0.1765 35 1 4.2260 -9.0132 0.9634 36 1 4.0869 -9.1506 -2.0846 37 1 5.4133 -9.7267 -1.0452 38 1 -0.2159 -11.6225 -1.4195 39 1 -0.0092 -13.2672 -1.1460 40 1 1.8207 -10.4025 0.9670 41 1 0.6187 -9.7403 -0.1706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117409262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:02 Heat of formation + Delta-G solvation = -161.738519 kcal Electronic energy + Delta-G solvation = -22147.517567 eV Core-core repulsion = 18639.692276 eV Total energy + Delta-G solvation = -3507.825291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73997 -40.51998 -39.08455 -36.65656 -35.91640 -34.96256 -34.59532 -32.70995 -31.41589 -29.19400 -27.59313 -25.91874 -24.30758 -23.38279 -21.77347 -21.61762 -20.18276 -18.89554 -18.41598 -18.32603 -17.85997 -17.26164 -17.07176 -16.75701 -16.54016 -16.35764 -15.80796 -15.60916 -15.26834 -14.87781 -14.54953 -14.51321 -13.98190 -13.66058 -13.60230 -13.45566 -13.01577 -12.79572 -12.71407 -12.36107 -12.12497 -12.11881 -11.94575 -11.44035 -11.34804 -11.29751 -11.16183 -11.10196 -10.79335 -10.73159 -10.52856 -9.72973 -8.17393 -6.29292 1.31553 1.41646 1.45215 1.53012 1.54636 1.79092 1.96128 2.43059 3.05166 3.15498 3.42474 3.55222 3.72710 3.84241 3.95585 4.01629 4.13304 4.20454 4.27888 4.34436 4.54534 4.61862 4.69093 4.78633 4.83236 4.87739 4.91714 5.20546 5.25082 5.36003 5.39972 5.58684 5.72649 5.80694 5.90238 5.93833 6.20307 6.27103 6.30256 6.89440 7.05404 7.17826 7.40357 8.94592 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041983 B = 0.002525 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.780900 B =11085.761139 C =11583.879033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.096 4.096 12 C -0.128 4.128 13 C 0.518 3.482 14 O -0.578 6.578 15 N -0.617 5.617 16 C 0.064 3.936 17 C 0.043 3.957 18 O -0.377 6.377 19 C 0.065 3.935 20 H 0.106 0.894 21 C 0.528 3.472 22 N -0.828 5.828 23 O -0.570 6.570 24 C 0.090 3.910 25 H 0.263 0.737 26 H -0.015 1.015 27 H -0.016 1.016 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.418 0.582 39 H 0.415 0.585 40 H 0.077 0.923 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 -23.218 -3.081 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.134 4.134 12 C -0.167 4.167 13 C 0.308 3.692 14 O -0.457 6.457 15 N -0.351 5.351 16 C -0.057 4.057 17 C -0.034 4.034 18 O -0.295 6.295 19 C 0.003 3.997 20 H 0.124 0.876 21 C 0.311 3.689 22 N -0.394 5.394 23 O -0.448 6.448 24 C -0.033 4.033 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.002 0.998 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.155 0.845 38 H 0.250 0.750 39 H 0.249 0.751 40 H 0.095 0.905 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.697 -23.747 -2.873 25.128 hybrid contribution -0.825 1.118 -0.016 1.390 sum 6.872 -22.628 -2.889 23.825 Atomic orbital electron populations 1.70120 1.08050 1.27782 1.51916 1.26077 0.95760 1.03686 0.94855 0.85464 0.78189 0.77818 0.79348 1.18875 1.21214 1.18955 1.21742 0.93763 0.92248 1.50188 0.91535 1.19056 0.94719 0.93782 0.94315 1.21442 0.97795 0.92661 1.01392 1.21259 0.97471 0.93519 1.01150 1.21732 0.99093 0.89139 1.06732 1.21267 0.87651 0.86104 0.74142 1.90691 1.16021 1.87722 1.51239 1.48230 1.08150 1.04784 1.73954 1.22809 0.77835 1.03857 1.01234 1.23353 0.99374 0.82706 0.97934 1.88073 1.16601 1.31503 1.93356 1.22256 0.84012 0.92859 1.00564 0.87602 1.20159 0.83244 0.89741 0.75761 1.43614 1.07629 1.15256 1.72914 1.90763 1.60511 1.44791 1.48782 1.22070 0.98848 0.83634 0.98788 0.92884 0.99641 0.99787 0.92108 0.91881 0.93585 0.93924 0.86332 0.85891 0.85520 0.89316 0.91195 0.84489 0.75050 0.75145 0.90459 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.29 21.45 0.28 -58.03 16 2 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -30.72 9.11 25.60 0.23 -30.49 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 0.98 4.97 29.85 0.15 1.13 16 10 C -0.10 -3.68 5.15 30.59 0.16 -3.52 16 11 C -0.10 -3.20 4.50 30.60 0.14 -3.07 16 12 C -0.13 -2.76 4.07 29.85 0.12 -2.64 16 13 C 0.52 12.52 7.71 87.66 0.68 13.19 16 14 O -0.58 -19.11 15.45 -3.04 -0.05 -19.16 16 15 N -0.62 -10.86 3.02 -817.41 -2.47 -13.33 16 16 C 0.06 0.70 6.54 86.35 0.56 1.27 16 17 C 0.04 0.46 6.98 72.08 0.50 0.96 16 18 O -0.38 -7.03 9.92 -130.02 -1.29 -8.32 16 19 C 0.07 1.04 3.19 29.94 0.10 1.14 16 20 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 21 C 0.53 9.53 7.45 87.66 0.65 10.18 16 22 N -0.83 -7.72 8.84 -173.53 -1.53 -9.25 16 23 O -0.57 -15.91 17.35 15.95 0.28 -15.63 16 24 C 0.09 1.52 5.89 86.34 0.51 2.03 16 25 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 26 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 27 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 31 H 0.04 1.59 8.10 -2.38 -0.02 1.57 16 32 H 0.12 2.01 8.02 -2.39 -0.02 2.00 16 33 H 0.12 1.95 7.65 -2.39 -0.02 1.93 16 34 H 0.13 0.82 6.06 -2.39 -0.01 0.81 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.64 8.14 -2.38 -0.02 0.63 16 37 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.42 1.88 8.83 -92.71 -0.82 1.06 16 39 H 0.42 2.92 8.93 -92.71 -0.83 2.10 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 1.81 7.08 -2.39 -0.02 1.79 16 Total: -1.00 -83.44 341.85 0.91 -82.53 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -0.60 Total: 4.86 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 4.26 Total: -9.74 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -3.72 Total: -80.61 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.06 Total: -43.11 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -83.44 0.91 -82.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117409262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.211 kcal (2) G-P(sol) polarization free energy of solvation -83.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds