Wall clock time and date at job start Tue Mar 31 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00042 * 2 1 4 4 C 1.53000 * 112.85185 * 294.62720 * 3 2 1 5 5 N 1.46495 * 109.47143 * 288.92302 * 4 3 2 6 6 C 1.34785 * 119.99954 * 175.19621 * 5 4 3 7 7 O 1.21348 * 119.99872 * 359.72255 * 6 5 4 8 8 C 1.49444 * 120.00164 * 179.72317 * 6 5 4 9 9 O 1.21354 * 120.00190 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00236 * 179.97438 * 8 6 5 11 11 C 1.46503 * 120.00360 * 179.97438 * 10 8 6 12 12 C 1.52991 * 109.47241 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47267 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99805 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00305 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00086 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47280 * 59.99821 * 17 15 13 19 19 H 1.48496 * 109.47264 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46984 * 299.99636 * 17 15 13 21 21 C 1.53786 * 113.69104 * 65.90007 * 3 2 1 22 22 C 1.53775 * 87.07875 * 89.12514 * 21 3 2 23 23 C 1.53773 * 87.08499 * 25.43385 * 22 21 3 24 24 H 1.08997 * 109.47055 * 176.26884 * 1 2 3 25 25 H 1.09002 * 109.46695 * 296.26326 * 1 2 3 26 26 H 1.09000 * 109.47054 * 56.26278 * 1 2 3 27 27 H 1.08999 * 109.47141 * 168.92155 * 4 3 2 28 28 H 1.09005 * 109.46951 * 48.92187 * 4 3 2 29 29 H 0.96997 * 120.00547 * 354.92040 * 5 4 3 30 30 H 0.97005 * 119.99754 * 0.02562 * 10 8 6 31 31 H 1.08997 * 109.47361 * 300.00861 * 11 10 8 32 32 H 1.09006 * 109.46862 * 60.00208 * 11 10 8 33 33 H 1.08995 * 109.47600 * 300.00063 * 12 11 10 34 34 H 1.09000 * 109.47356 * 60.00620 * 12 11 10 35 35 H 0.96989 * 120.00150 * 180.02562 * 16 15 13 36 36 H 1.08998 * 113.61110 * 203.67888 * 21 3 2 37 37 H 1.08997 * 113.61126 * 334.57224 * 21 3 2 38 38 H 1.09003 * 113.61666 * 270.88152 * 22 21 3 39 39 H 1.09000 * 113.60921 * 139.98569 * 22 21 3 40 40 H 1.09009 * 113.61380 * 220.01700 * 23 22 21 41 41 H 1.09001 * 113.61640 * 89.11477 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7152 2.0872 -1.2817 5 7 2.4719 1.5061 -2.3933 6 6 2.2950 1.9722 -3.6455 7 8 1.5052 2.8699 -3.8528 8 6 3.0715 1.3836 -4.7786 9 8 3.8610 0.4856 -4.5714 10 7 2.8942 1.8494 -6.0309 11 6 3.6558 1.2727 -7.1416 12 6 3.2694 1.9759 -8.4443 13 6 4.0523 1.3823 -9.5870 14 1 4.7550 0.5831 -9.4025 15 6 3.8717 1.8594 -10.8679 16 7 3.0164 2.8330 -11.0924 17 14 4.8417 1.1231 -12.2843 18 1 4.5345 -0.3255 -12.3945 19 1 4.4676 1.8065 -13.5485 20 1 6.2946 1.3036 -12.0359 21 6 1.7363 2.1038 1.2855 22 6 3.0185 1.4749 1.8556 23 6 3.4946 1.3188 0.4018 24 1 -0.3633 -1.0255 -0.0669 25 1 -0.3633 0.4548 0.9216 26 1 -0.3633 0.5707 -0.8546 27 1 2.0082 3.1285 -1.1477 28 1 0.6488 2.0352 -1.5016 29 1 3.1032 0.7885 -2.2277 30 1 2.2629 2.5669 -6.1966 31 1 4.7221 1.4066 -6.9593 32 1 3.4318 0.2090 -7.2222 33 1 2.2032 1.8423 -8.6269 34 1 3.4938 3.0394 -8.3635 35 1 2.8890 3.1684 -11.9935 36 1 1.8018 3.1835 1.1512 37 1 0.8297 1.7953 1.8062 38 1 2.8504 0.5257 2.3644 39 1 3.6222 2.1687 2.4407 40 1 4.0076 0.3765 0.2091 41 1 4.0409 2.1840 0.0259 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118083988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:29 Heat of formation + Delta-G solvation = -102.265589 kcal Electronic energy + Delta-G solvation = -22067.542984 eV Core-core repulsion = 18562.296632 eV Total energy + Delta-G solvation = -3505.246351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83899 -39.98784 -38.16818 -36.01699 -35.35806 -34.40430 -32.83146 -29.83246 -28.83624 -27.51776 -25.98923 -25.45297 -23.76364 -22.44842 -21.01188 -20.21504 -19.87737 -18.44536 -16.88449 -16.72059 -16.36443 -16.16559 -15.74242 -15.60846 -15.03175 -14.81112 -14.65257 -14.49467 -14.28944 -13.97603 -13.40132 -13.18538 -12.82183 -12.65543 -12.31668 -12.25082 -11.84625 -11.48593 -11.46831 -11.23600 -11.23214 -11.04106 -10.68059 -10.59176 -10.38098 -9.92245 -9.76819 -9.43410 -9.35710 -9.18096 -8.67965 -8.40841 -6.09562 -4.13307 1.63072 2.50546 3.20291 3.31110 3.35212 3.38047 3.45005 3.81585 4.10483 4.17867 4.21511 4.36884 4.41258 4.78302 4.84056 4.95079 4.98800 5.10323 5.22538 5.25352 5.27186 5.33169 5.42296 5.50485 5.59428 5.72862 5.84270 6.09940 6.19461 6.25063 6.61144 6.70686 6.78915 7.07499 7.47596 7.58619 7.68382 7.87745 7.94208 8.22310 8.35718 8.92133 9.51503 11.01947 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042415 B = 0.002553 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.988835 B =10965.532663 C =11091.864508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.074 3.926 4 C 0.104 3.896 5 N -0.698 5.698 6 C 0.507 3.493 7 O -0.523 6.523 8 C 0.497 3.503 9 O -0.532 6.532 10 N -0.686 5.686 11 C 0.119 3.881 12 C 0.011 3.989 13 C -0.524 4.524 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.899 3.101 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.158 4.158 22 C -0.133 4.133 23 C -0.127 4.127 24 H 0.089 0.911 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.415 0.585 30 H 0.410 0.590 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.263 0.737 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.883 -1.501 26.312 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.275 6.275 3 C 0.034 3.966 4 C -0.020 4.020 5 N -0.352 5.352 6 C 0.288 3.712 7 O -0.399 6.399 8 C 0.277 3.723 9 O -0.410 6.410 10 N -0.337 5.337 11 C -0.003 4.003 12 C -0.026 4.026 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.726 3.274 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.196 4.196 22 C -0.170 4.170 23 C -0.164 4.164 24 H 0.108 0.892 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.252 0.748 30 H 0.246 0.754 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.858 -1.551 26.128 26.456 hybrid contribution 0.120 -0.099 -0.877 0.891 sum -3.738 -1.650 25.250 25.579 Atomic orbital electron populations 1.22819 0.80818 1.03140 1.00366 1.87960 1.19971 1.24871 1.94682 1.22867 0.96438 0.84624 0.92704 1.21892 0.97408 0.97504 0.85172 1.45600 1.44143 1.39519 1.05921 1.20489 0.83197 0.83184 0.84319 1.90751 1.35631 1.29181 1.84299 1.19949 0.83833 0.84053 0.84493 1.90735 1.36340 1.29668 1.84253 1.46228 1.42836 1.38188 1.06464 1.21933 0.94848 0.98095 0.85414 1.19348 0.97799 0.96240 0.89233 1.20981 1.23822 1.19654 0.91799 0.92207 1.25003 0.95332 0.94939 0.98997 1.69947 1.34993 1.26596 1.21592 0.86549 0.80363 0.79323 0.81158 1.20092 1.21237 1.20097 1.23488 0.99514 1.00457 0.96140 1.22754 0.96612 1.01403 0.96258 1.23023 0.93306 1.03799 0.96279 0.89228 0.93715 0.93490 0.89959 0.90547 0.74779 0.75416 0.91863 0.91863 0.95680 0.95666 0.92711 0.88744 0.90518 0.89613 0.90916 0.89855 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.63 101.05 1.07 1.26 16 2 O -0.36 -3.37 10.56 -35.23 -0.37 -3.74 16 3 C 0.07 0.59 0.77 -89.80 -0.07 0.53 16 4 C 0.10 1.00 5.12 -4.04 -0.02 0.98 16 5 N -0.70 -8.44 5.41 -60.73 -0.33 -8.77 16 6 C 0.51 7.77 7.89 -11.58 -0.09 7.68 16 7 O -0.52 -8.93 16.47 5.50 0.09 -8.84 16 8 C 0.50 8.75 7.89 -11.59 -0.09 8.66 16 9 O -0.53 -10.28 16.48 5.49 0.09 -10.19 16 10 N -0.69 -12.70 5.55 -60.73 -0.34 -13.04 16 11 C 0.12 2.51 5.61 -4.04 -0.02 2.48 16 12 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 13 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 17 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C -0.16 -0.96 7.21 -25.92 -0.19 -1.15 16 22 C -0.13 -0.80 8.02 -25.93 -0.21 -1.01 16 23 C -0.13 -0.91 6.90 -25.92 -0.18 -1.09 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.26 6.84 -51.93 -0.36 -0.10 16 26 H 0.05 0.36 6.48 -51.93 -0.34 0.02 16 27 H 0.08 0.74 7.95 -51.93 -0.41 0.33 16 28 H 0.08 0.78 6.48 -51.93 -0.34 0.44 16 29 H 0.42 4.86 7.57 -40.82 -0.31 4.55 16 30 H 0.41 7.23 7.94 -40.82 -0.32 6.91 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 36 H 0.09 0.49 7.96 -51.93 -0.41 0.07 16 37 H 0.08 0.43 6.81 -51.93 -0.35 0.08 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -31.76 345.62 -6.46 -38.22 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.18 Total: 5.05 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.35 Total: 5.27 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.07 Total: -47.29 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.19 Total: -22.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.76 -6.46 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118083988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.042 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds