Wall clock time and date at job start Tue Mar 31 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00042 * 2 1 4 4 C 1.53000 * 112.85185 * 294.62720 * 3 2 1 5 5 N 1.46495 * 109.47143 * 288.92302 * 4 3 2 6 6 C 1.34785 * 119.99954 * 175.19621 * 5 4 3 7 7 O 1.21348 * 119.99872 * 359.72255 * 6 5 4 8 8 C 1.49444 * 120.00164 * 179.72317 * 6 5 4 9 9 O 1.21354 * 120.00190 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00236 * 179.97438 * 8 6 5 11 11 C 1.46503 * 120.00360 * 179.97438 * 10 8 6 12 12 C 1.52991 * 109.47241 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47267 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99805 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00305 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99974 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00086 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47280 * 59.99821 * 17 15 13 19 19 H 1.48496 * 109.47264 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46984 * 299.99636 * 17 15 13 21 21 C 1.53786 * 113.69104 * 65.90007 * 3 2 1 22 22 C 1.53775 * 87.07875 * 89.12514 * 21 3 2 23 23 C 1.53773 * 87.08499 * 25.43385 * 22 21 3 24 24 H 1.08997 * 109.47055 * 176.26884 * 1 2 3 25 25 H 1.09002 * 109.46695 * 296.26326 * 1 2 3 26 26 H 1.09000 * 109.47054 * 56.26278 * 1 2 3 27 27 H 1.08999 * 109.47141 * 168.92155 * 4 3 2 28 28 H 1.09005 * 109.46951 * 48.92187 * 4 3 2 29 29 H 0.96997 * 120.00547 * 354.92040 * 5 4 3 30 30 H 0.97005 * 119.99754 * 0.02562 * 10 8 6 31 31 H 1.08997 * 109.47361 * 300.00861 * 11 10 8 32 32 H 1.09006 * 109.46862 * 60.00208 * 11 10 8 33 33 H 1.08995 * 109.47600 * 300.00063 * 12 11 10 34 34 H 1.09000 * 109.47356 * 60.00620 * 12 11 10 35 35 H 0.96989 * 120.00150 * 180.02562 * 16 15 13 36 36 H 1.08998 * 113.61110 * 203.67888 * 21 3 2 37 37 H 1.08997 * 113.61126 * 334.57224 * 21 3 2 38 38 H 1.09003 * 113.61666 * 270.88152 * 22 21 3 39 39 H 1.09000 * 113.60921 * 139.98569 * 22 21 3 40 40 H 1.09009 * 113.61380 * 220.01700 * 23 22 21 41 41 H 1.09001 * 113.61640 * 89.11477 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7152 2.0872 -1.2817 5 7 2.4719 1.5061 -2.3933 6 6 2.2950 1.9722 -3.6455 7 8 1.5052 2.8699 -3.8528 8 6 3.0715 1.3836 -4.7786 9 8 3.8610 0.4856 -4.5714 10 7 2.8942 1.8494 -6.0309 11 6 3.6558 1.2727 -7.1416 12 6 3.2694 1.9759 -8.4443 13 6 4.0523 1.3823 -9.5870 14 1 4.7550 0.5831 -9.4025 15 6 3.8717 1.8594 -10.8679 16 7 3.0164 2.8330 -11.0924 17 14 4.8417 1.1231 -12.2843 18 1 4.5345 -0.3255 -12.3945 19 1 4.4676 1.8065 -13.5485 20 1 6.2946 1.3036 -12.0359 21 6 1.7363 2.1038 1.2855 22 6 3.0185 1.4749 1.8556 23 6 3.4946 1.3188 0.4018 24 1 -0.3633 -1.0255 -0.0669 25 1 -0.3633 0.4548 0.9216 26 1 -0.3633 0.5707 -0.8546 27 1 2.0082 3.1285 -1.1477 28 1 0.6488 2.0352 -1.5016 29 1 3.1032 0.7885 -2.2277 30 1 2.2629 2.5669 -6.1966 31 1 4.7221 1.4066 -6.9593 32 1 3.4318 0.2090 -7.2222 33 1 2.2032 1.8423 -8.6269 34 1 3.4938 3.0394 -8.3635 35 1 2.8890 3.1684 -11.9935 36 1 1.8018 3.1835 1.1512 37 1 0.8297 1.7953 1.8062 38 1 2.8504 0.5257 2.3644 39 1 3.6222 2.1687 2.4407 40 1 4.0076 0.3765 0.2091 41 1 4.0409 2.1840 0.0259 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118083988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:28 Heat of formation + Delta-G solvation = -126.062618 kcal Electronic energy + Delta-G solvation = -22068.574900 eV Core-core repulsion = 18562.296632 eV Total energy + Delta-G solvation = -3506.278268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.86341 -40.95230 -39.51304 -36.93341 -36.60758 -35.66100 -34.77069 -31.70760 -29.75839 -28.08901 -27.31529 -26.42276 -25.10499 -23.39165 -22.75649 -21.48813 -20.51919 -19.72829 -18.58720 -17.88985 -17.44291 -17.21781 -16.89153 -16.53840 -16.48495 -16.13111 -15.92307 -15.65728 -15.11973 -14.99164 -14.72270 -14.53320 -14.30384 -13.71567 -13.30957 -13.27084 -12.93579 -12.92897 -12.75478 -12.54830 -12.38802 -12.27696 -12.01992 -11.70983 -11.69274 -11.46395 -11.15600 -10.81285 -10.61378 -10.42389 -10.39698 -10.21077 -8.23673 -6.35087 0.29307 1.27546 1.43479 1.45595 1.53743 2.09314 2.39102 2.54533 2.72554 3.11192 3.37718 3.49292 3.56046 3.61007 3.87179 4.27263 4.36465 4.38041 4.41086 4.44304 4.46853 4.58611 4.76679 4.80320 4.81341 4.88035 5.00226 5.06480 5.06773 5.10206 5.19064 5.37504 5.41504 5.54214 5.74690 5.89031 6.12430 6.18963 6.33034 6.67170 6.78730 6.90402 7.34466 8.88254 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042415 B = 0.002553 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.988835 B =10965.532663 C =11091.864508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.376 6.376 3 C 0.069 3.931 4 C 0.101 3.899 5 N -0.681 5.681 6 C 0.514 3.486 7 O -0.542 6.542 8 C 0.500 3.500 9 O -0.549 6.549 10 N -0.688 5.688 11 C 0.138 3.862 12 C 0.019 3.981 13 C -0.546 4.546 14 H 0.065 0.935 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.968 3.032 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.149 4.149 22 C -0.128 4.128 23 C -0.131 4.131 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.419 0.581 30 H 0.414 0.586 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.007 0.993 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.458 -1.785 27.546 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.295 6.295 3 C 0.029 3.971 4 C -0.022 4.022 5 N -0.333 5.333 6 C 0.294 3.706 7 O -0.420 6.420 8 C 0.280 3.720 9 O -0.427 6.427 10 N -0.339 5.339 11 C 0.015 3.985 12 C -0.018 4.018 13 C -0.584 4.584 14 H 0.083 0.917 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.187 4.187 22 C -0.165 4.165 23 C -0.168 4.168 24 H 0.114 0.886 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.256 0.744 30 H 0.251 0.749 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.433 -1.849 27.413 27.689 hybrid contribution -0.038 -0.024 -1.179 1.180 sum -3.471 -1.873 26.234 26.529 Atomic orbital electron populations 1.22940 0.79977 1.03709 1.00953 1.87937 1.21039 1.25753 1.94774 1.22987 0.97132 0.84424 0.92548 1.22154 0.96867 0.98340 0.84865 1.45618 1.43540 1.38782 1.05399 1.19968 0.82908 0.83125 0.84593 1.90752 1.36539 1.30156 1.84541 1.20329 0.83505 0.83518 0.84633 1.90724 1.37087 1.30376 1.84549 1.46065 1.42903 1.38475 1.06459 1.21486 0.94934 0.97430 0.84654 1.19168 0.96404 0.95460 0.90808 1.21428 1.24176 1.19924 0.92919 0.91692 1.25926 0.96302 0.95275 1.01891 1.70068 1.36473 1.27922 1.22346 0.85451 0.79057 0.78706 0.77551 1.19189 1.20832 1.19150 1.23496 0.99827 1.00916 0.94490 1.22725 0.96629 1.01572 0.95576 1.23096 0.92738 1.03679 0.97293 0.88620 0.92027 0.94133 0.88785 0.90851 0.74405 0.74917 0.91952 0.92078 0.97451 0.97363 0.92540 0.87455 0.89896 0.90011 0.89558 0.90726 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.63 113.37 1.21 1.47 16 2 O -0.38 -6.64 10.56 -148.98 -1.57 -8.22 16 3 C 0.07 1.00 0.77 -10.27 -0.01 0.99 16 4 C 0.10 1.79 5.12 86.38 0.44 2.23 16 5 N -0.68 -15.72 5.41 -464.41 -2.51 -18.24 16 6 C 0.51 15.37 7.89 87.27 0.69 16.06 16 7 O -0.54 -18.16 16.47 -3.24 -0.05 -18.21 16 8 C 0.50 17.37 7.89 87.27 0.69 18.06 16 9 O -0.55 -20.89 16.48 -3.26 -0.05 -20.94 16 10 N -0.69 -25.51 5.55 -464.42 -2.58 -28.09 16 11 C 0.14 5.84 5.61 86.38 0.48 6.33 16 12 C 0.02 0.97 5.09 29.85 0.15 1.12 16 13 C -0.55 -30.30 9.11 25.60 0.23 -30.07 16 14 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 15 C 0.00 0.27 5.46 84.65 0.46 0.73 16 16 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 17 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 21 C -0.15 -1.45 7.21 31.12 0.22 -1.23 16 22 C -0.13 -1.26 8.02 31.12 0.25 -1.01 16 23 C -0.13 -1.66 6.90 31.12 0.21 -1.45 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 0.60 6.84 -2.39 -0.02 0.58 16 26 H 0.04 0.58 6.48 -2.39 -0.02 0.57 16 27 H 0.09 1.50 7.95 -2.39 -0.02 1.48 16 28 H 0.07 1.40 6.48 -2.38 -0.02 1.38 16 29 H 0.42 9.35 7.57 -92.71 -0.70 8.65 16 30 H 0.41 14.78 7.94 -92.70 -0.74 14.04 16 31 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.27 14.86 8.31 -92.72 -0.77 14.08 16 36 H 0.11 0.78 7.96 -2.39 -0.02 0.77 16 37 H 0.08 0.72 6.81 -2.39 -0.02 0.71 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.11 1.19 8.10 -2.39 -0.02 1.17 16 Total: -1.00 -66.84 345.62 0.19 -66.64 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -0.39 Total: 23.12 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 5.04 Total: 13.24 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -4.81 Total: -101.13 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -1.68 Total: -47.37 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.84 0.19 -66.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118083988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.419 kcal (2) G-P(sol) polarization free energy of solvation -66.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds