Wall clock time and date at job start Tue Mar 31 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.55592 * 2 1 4 4 C 1.54994 * 110.62123 * 237.11816 * 2 1 3 5 5 C 1.54807 * 102.09860 * 204.47570 * 4 2 1 6 6 H 1.09000 * 110.48902 * 139.55378 * 5 4 2 7 7 N 1.46493 * 110.49206 * 262.20631 * 5 4 2 8 8 C 1.34775 * 120.00175 * 201.22088 * 7 5 4 9 9 O 1.21346 * 120.00098 * 359.97438 * 8 7 5 10 10 C 1.49455 * 119.99979 * 179.97438 * 8 7 5 11 11 O 1.21346 * 119.99923 * 359.97438 * 10 8 7 12 12 N 1.34768 * 119.99871 * 179.97438 * 10 8 7 13 13 C 1.46504 * 119.99934 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47023 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47026 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47045 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00197 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99872 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99834 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46930 * 59.99997 * 20 18 16 22 22 H 1.48502 * 109.46847 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47489 * 299.99923 * 20 18 16 24 24 C 1.54105 * 104.18504 * 20.88235 * 5 4 2 25 25 O 1.43746 * 107.42259 * 1.95340 * 24 5 4 26 26 H 1.09000 * 109.46861 * 182.87795 * 1 2 3 27 27 H 1.09003 * 109.46747 * 302.88207 * 1 2 3 28 28 H 1.08994 * 109.46740 * 62.87799 * 1 2 3 29 29 H 1.09007 * 110.90973 * 86.27428 * 4 2 1 30 30 H 1.08999 * 110.90910 * 322.67826 * 4 2 1 31 31 H 0.97001 * 119.99966 * 21.21209 * 7 5 4 32 32 H 0.97002 * 120.00397 * 0.02562 * 12 10 8 33 33 H 1.08996 * 109.47056 * 299.99946 * 13 12 10 34 34 H 1.09003 * 109.47165 * 60.00528 * 13 12 10 35 35 H 1.09003 * 109.47566 * 300.00370 * 14 13 12 36 36 H 1.09009 * 109.46762 * 60.00748 * 14 13 12 37 37 H 1.08996 * 109.47110 * 300.00231 * 15 14 13 38 38 H 1.08997 * 109.46896 * 60.00448 * 15 14 13 39 39 H 0.96996 * 120.00071 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.88076 * 121.45430 * 24 5 4 41 41 H 1.08996 * 109.87584 * 242.45546 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0759 -0.7876 -1.2182 5 6 3.4795 -1.2157 -0.7253 6 1 3.6975 -2.2377 -1.0353 7 7 4.5026 -0.2963 -1.2295 8 6 5.7896 -0.6908 -1.2954 9 8 6.1011 -1.8074 -0.9367 10 6 6.8332 0.2470 -1.8103 11 8 6.5217 1.3634 -2.1695 12 7 8.1203 -0.1474 -1.8757 13 6 9.1432 0.7717 -2.3810 14 6 10.5086 0.0820 -2.3499 15 6 11.5768 1.0416 -2.8782 16 6 12.9216 0.3621 -2.8481 17 1 13.0060 -0.6525 -2.4879 18 6 14.0443 1.0362 -3.2796 19 7 13.9416 2.2718 -3.7178 20 14 15.7114 0.1941 -3.2417 21 1 15.6719 -1.0205 -4.0952 22 1 16.7481 1.1255 -3.7546 23 1 16.0392 -0.1922 -1.8459 24 6 3.3840 -1.1267 0.8102 25 8 2.0397 -0.7353 1.1358 26 1 -0.3633 -1.0264 0.0516 27 1 -0.3633 0.5580 0.8631 28 1 -0.3632 0.4685 -0.9146 29 1 2.1510 -0.1446 -2.0952 30 1 1.4550 -1.6585 -1.4283 31 1 4.2537 0.5963 -1.5160 32 1 8.3693 -1.0400 -1.5890 33 1 8.9024 1.0556 -3.4054 34 1 9.1724 1.6630 -1.7541 35 1 10.7492 -0.2017 -1.3253 36 1 10.4797 -0.8095 -2.9766 37 1 11.3361 1.3249 -3.9028 38 1 11.6059 1.9333 -2.2520 39 1 14.7314 2.7459 -4.0217 40 1 3.6045 -2.0983 1.2522 41 1 4.0873 -0.3820 1.1827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118150731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:10 Heat of formation + Delta-G solvation = -133.869283 kcal Electronic energy + Delta-G solvation = -21639.678927 eV Core-core repulsion = 18133.062137 eV Total energy + Delta-G solvation = -3506.616790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99373 -39.81962 -38.39487 -35.86063 -34.95161 -33.35317 -32.56519 -31.28102 -30.57223 -27.27930 -26.53906 -24.90080 -22.90744 -21.94108 -21.42513 -20.82916 -20.30912 -18.47810 -17.50375 -16.60261 -16.42014 -16.12461 -16.04920 -15.60583 -15.30506 -15.07785 -14.69444 -14.46851 -13.88834 -13.66719 -13.46221 -13.09640 -12.75908 -12.46743 -12.32258 -12.13105 -11.93030 -11.85196 -11.82722 -11.66606 -11.26501 -10.90839 -10.78905 -10.64925 -10.14190 -9.92708 -9.85344 -9.64408 -9.41613 -9.16740 -9.03688 -8.39429 -6.04245 -4.07436 1.31388 2.19953 3.11907 3.31371 3.35502 3.36048 3.38332 3.57981 3.92152 4.19214 4.39194 4.42580 4.45551 4.62660 4.71480 4.87346 5.08770 5.15917 5.26669 5.31621 5.37848 5.43759 5.53882 5.55268 5.65372 5.67664 5.86574 6.04320 6.21237 6.42912 6.50723 6.63595 6.80662 6.92211 7.31501 7.59276 7.61838 7.70930 7.93605 7.97715 8.34918 8.98793 9.56925 11.06960 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.054659 B = 0.002241 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.143658 B =12493.078476 C =12758.312086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.158 4.158 5 C 0.110 3.890 6 H 0.110 0.890 7 N -0.698 5.698 8 C 0.511 3.489 9 O -0.516 6.516 10 C 0.500 3.500 11 O -0.526 6.526 12 N -0.690 5.690 13 C 0.113 3.887 14 C -0.123 4.123 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.037 3.963 25 O -0.371 6.371 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.414 0.586 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.095 0.905 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.360 -5.680 5.828 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.091 0.909 4 C -0.196 4.196 5 C 0.005 3.995 6 H 0.127 0.873 7 N -0.353 5.353 8 C 0.292 3.708 9 O -0.391 6.391 10 C 0.280 3.720 11 O -0.403 6.403 12 N -0.342 5.342 13 C -0.009 4.009 14 C -0.161 4.161 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.041 4.041 25 O -0.290 6.290 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.251 0.749 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.337 -5.579 5.948 27.571 hybrid contribution 1.189 -0.327 -0.203 1.250 sum -25.149 -5.906 5.745 26.464 Atomic orbital electron populations 1.21774 0.92732 1.03169 1.02701 1.23233 0.95625 0.95478 0.84638 0.90883 1.23508 0.94644 1.02135 0.99296 1.22409 0.87401 0.95606 0.94118 0.87252 1.45845 1.06295 1.18455 1.64752 1.20428 0.83880 0.87616 0.78912 1.90768 1.81164 1.20441 1.46739 1.19948 0.84155 0.87403 0.80537 1.90765 1.81262 1.20391 1.47847 1.46080 1.06379 1.19118 1.62583 1.21865 0.86976 0.92501 0.99518 1.21936 0.92370 1.00270 1.01515 1.19027 0.91719 0.94038 0.96511 1.21159 0.92306 0.99795 1.42953 0.92614 1.25028 0.99275 0.94901 0.95256 1.69946 1.29752 1.10580 1.42999 0.86625 0.83486 0.79276 0.78411 1.20226 1.21270 1.20217 1.23650 0.84757 1.01686 0.93994 1.88974 1.27634 1.73587 1.38834 0.91587 0.91665 0.90894 0.88979 0.88560 0.74902 0.75270 0.91035 0.91034 0.92399 0.92411 0.96197 0.96195 0.92845 0.88643 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.66 37.16 0.36 -0.38 16 2 C 0.07 0.44 3.97 -25.68 -0.10 0.34 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.16 -0.88 6.22 -24.73 -0.15 -1.03 16 5 C 0.11 0.86 3.34 -66.41 -0.22 0.64 16 6 H 0.11 0.91 7.67 -51.93 -0.40 0.51 16 7 N -0.70 -6.46 5.01 -52.76 -0.26 -6.72 16 8 C 0.51 6.27 7.88 -11.58 -0.09 6.17 16 9 O -0.52 -7.23 16.19 5.50 0.09 -7.14 16 10 C 0.50 7.14 7.89 -11.59 -0.09 7.05 16 11 O -0.53 -8.57 16.48 5.50 0.09 -8.48 16 12 N -0.69 -10.00 5.55 -60.73 -0.34 -10.34 16 13 C 0.11 1.90 5.67 -4.04 -0.02 1.88 16 14 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.04 0.32 7.49 37.73 0.28 0.61 16 25 O -0.37 -3.45 11.24 -35.23 -0.40 -3.85 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.41 7.96 -51.93 -0.41 0.00 16 30 H 0.10 0.45 8.06 -51.93 -0.42 0.03 16 31 H 0.41 3.39 8.00 -40.82 -0.33 3.06 16 32 H 0.41 5.43 7.94 -40.82 -0.32 5.10 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -32.07 348.73 -7.06 -39.13 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.48 Total: 1.59 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.73 Total: -0.03 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.14 Total: -42.86 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.22 Total: -19.46 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.07 -7.06 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118150731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.741 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds