Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.55592 * 2 1 4 4 C 1.54994 * 110.62123 * 237.11816 * 2 1 3 5 5 C 1.54807 * 102.09860 * 204.47570 * 4 2 1 6 6 H 1.09000 * 110.48902 * 139.55378 * 5 4 2 7 7 N 1.46493 * 110.49206 * 262.20631 * 5 4 2 8 8 C 1.34775 * 120.00175 * 201.22088 * 7 5 4 9 9 O 1.21346 * 120.00098 * 359.97438 * 8 7 5 10 10 C 1.49455 * 119.99979 * 179.97438 * 8 7 5 11 11 O 1.21346 * 119.99923 * 359.97438 * 10 8 7 12 12 N 1.34768 * 119.99871 * 179.97438 * 10 8 7 13 13 C 1.46504 * 119.99934 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47023 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47026 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47045 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00197 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99872 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99834 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46930 * 59.99997 * 20 18 16 22 22 H 1.48502 * 109.46847 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47489 * 299.99923 * 20 18 16 24 24 C 1.54105 * 104.18504 * 20.88235 * 5 4 2 25 25 O 1.43746 * 107.42259 * 1.95340 * 24 5 4 26 26 H 1.09000 * 109.46861 * 182.87795 * 1 2 3 27 27 H 1.09003 * 109.46747 * 302.88207 * 1 2 3 28 28 H 1.08994 * 109.46740 * 62.87799 * 1 2 3 29 29 H 1.09007 * 110.90973 * 86.27428 * 4 2 1 30 30 H 1.08999 * 110.90910 * 322.67826 * 4 2 1 31 31 H 0.97001 * 119.99966 * 21.21209 * 7 5 4 32 32 H 0.97002 * 120.00397 * 0.02562 * 12 10 8 33 33 H 1.08996 * 109.47056 * 299.99946 * 13 12 10 34 34 H 1.09003 * 109.47165 * 60.00528 * 13 12 10 35 35 H 1.09003 * 109.47566 * 300.00370 * 14 13 12 36 36 H 1.09009 * 109.46762 * 60.00748 * 14 13 12 37 37 H 1.08996 * 109.47110 * 300.00231 * 15 14 13 38 38 H 1.08997 * 109.46896 * 60.00448 * 15 14 13 39 39 H 0.96996 * 120.00071 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.88076 * 121.45430 * 24 5 4 41 41 H 1.08996 * 109.87584 * 242.45546 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0759 -0.7876 -1.2182 5 6 3.4795 -1.2157 -0.7253 6 1 3.6975 -2.2377 -1.0353 7 7 4.5026 -0.2963 -1.2295 8 6 5.7896 -0.6908 -1.2954 9 8 6.1011 -1.8074 -0.9367 10 6 6.8332 0.2470 -1.8103 11 8 6.5217 1.3634 -2.1695 12 7 8.1203 -0.1474 -1.8757 13 6 9.1432 0.7717 -2.3810 14 6 10.5086 0.0820 -2.3499 15 6 11.5768 1.0416 -2.8782 16 6 12.9216 0.3621 -2.8481 17 1 13.0060 -0.6525 -2.4879 18 6 14.0443 1.0362 -3.2796 19 7 13.9416 2.2718 -3.7178 20 14 15.7114 0.1941 -3.2417 21 1 15.6719 -1.0205 -4.0952 22 1 16.7481 1.1255 -3.7546 23 1 16.0392 -0.1922 -1.8459 24 6 3.3840 -1.1267 0.8102 25 8 2.0397 -0.7353 1.1358 26 1 -0.3633 -1.0264 0.0516 27 1 -0.3633 0.5580 0.8631 28 1 -0.3632 0.4685 -0.9146 29 1 2.1510 -0.1446 -2.0952 30 1 1.4550 -1.6585 -1.4283 31 1 4.2537 0.5963 -1.5160 32 1 8.3693 -1.0400 -1.5890 33 1 8.9024 1.0556 -3.4054 34 1 9.1724 1.6630 -1.7541 35 1 10.7492 -0.2017 -1.3253 36 1 10.4797 -0.8095 -2.9766 37 1 11.3361 1.3249 -3.9028 38 1 11.6059 1.9333 -2.2520 39 1 14.7314 2.7459 -4.0217 40 1 3.6045 -2.0983 1.2522 41 1 4.0873 -0.3820 1.1827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118150731.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = -157.853105 kcal Electronic energy + Delta-G solvation = -21640.718944 eV Core-core repulsion = 18133.062137 eV Total energy + Delta-G solvation = -3507.656807 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.94146 -40.64978 -39.42222 -37.21852 -35.95050 -35.15028 -33.09879 -33.03531 -31.27606 -28.96303 -27.07785 -26.29240 -24.42895 -22.58642 -22.37626 -22.07010 -21.47096 -19.60616 -18.53700 -18.27443 -17.46548 -17.22435 -16.80167 -16.57295 -16.45106 -16.17594 -15.97017 -15.90114 -15.06273 -14.86130 -14.27032 -14.02976 -13.79010 -13.65158 -13.51556 -13.27069 -13.02359 -12.91288 -12.73168 -12.64640 -12.55326 -12.43941 -12.24429 -11.78410 -11.69896 -11.56069 -11.25453 -10.79408 -10.72283 -10.54337 -10.45958 -10.30714 -8.19424 -6.30359 0.24726 1.19941 1.42211 1.44659 1.52560 2.04451 2.41163 2.52929 2.85814 3.14363 3.30421 3.40992 3.67122 3.84606 4.07263 4.08449 4.15671 4.17770 4.40507 4.52068 4.61630 4.64317 4.70936 4.84985 4.85816 4.91198 4.92221 5.07841 5.13627 5.14897 5.21802 5.30355 5.51302 5.70618 5.82344 5.84329 5.84817 6.22260 6.27960 6.64300 6.85786 6.86586 7.38906 8.92175 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.054659 B = 0.002241 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.143658 B =12493.078476 C =12758.312086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 H 0.075 0.925 4 C -0.147 4.147 5 C 0.108 3.892 6 H 0.109 0.891 7 N -0.682 5.682 8 C 0.518 3.482 9 O -0.534 6.534 10 C 0.501 3.499 11 O -0.547 6.547 12 N -0.686 5.686 13 C 0.127 3.873 14 C -0.106 4.106 15 C 0.025 3.975 16 C -0.543 4.543 17 H 0.064 0.936 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.267 1.267 24 C 0.037 3.963 25 O -0.390 6.390 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.421 0.579 32 H 0.420 0.580 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.067 0.933 37 H -0.003 1.003 38 H -0.004 1.004 39 H 0.263 0.737 40 H 0.097 0.903 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.274 -6.958 5.873 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.002 3.998 3 H 0.092 0.908 4 C -0.185 4.185 5 C 0.004 3.996 6 H 0.127 0.873 7 N -0.336 5.336 8 C 0.298 3.702 9 O -0.411 6.411 10 C 0.282 3.718 11 O -0.425 6.425 12 N -0.338 5.338 13 C 0.004 3.996 14 C -0.144 4.144 15 C -0.013 4.013 16 C -0.581 4.581 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.790 3.210 21 H -0.192 1.192 22 H -0.211 1.211 23 H -0.192 1.192 24 C -0.041 4.041 25 O -0.310 6.310 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.259 0.741 32 H 0.257 0.743 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.294 -6.869 6.005 28.779 hybrid contribution 1.390 0.117 -0.199 1.409 sum -25.904 -6.752 5.806 27.392 Atomic orbital electron populations 1.21790 0.91540 1.03322 1.03484 1.23454 0.96626 0.95433 0.84241 0.90754 1.23513 0.92888 1.02816 0.99259 1.22536 0.88079 0.95264 0.93706 0.87301 1.45826 1.05487 1.18955 1.63368 1.19974 0.84302 0.86860 0.79042 1.90769 1.81477 1.20898 1.47944 1.20296 0.84287 0.87405 0.79833 1.90756 1.81609 1.21421 1.48713 1.45886 1.06223 1.19108 1.62569 1.21484 0.86517 0.92359 0.99236 1.21646 0.91839 0.99152 1.01774 1.18931 0.93018 0.94373 0.94971 1.21652 0.93587 1.00328 1.42556 0.91763 1.25987 1.03598 0.95549 0.94865 1.70084 1.30910 1.12198 1.44080 0.85497 0.78335 0.78286 0.78897 1.19154 1.21087 1.19183 1.23603 0.84567 1.01391 0.94494 1.88964 1.27715 1.74016 1.40317 0.91597 0.92177 0.88991 0.87398 0.87138 0.74107 0.74296 0.91621 0.91729 0.91474 0.91411 0.98502 0.98558 0.92788 0.88530 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.66 71.98 0.70 -0.49 16 2 C 0.06 0.68 3.97 31.28 0.12 0.80 16 3 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.15 -1.27 6.22 31.89 0.20 -1.08 16 5 C 0.11 1.52 3.34 45.98 0.15 1.67 16 6 H 0.11 1.61 7.67 -2.39 -0.02 1.59 16 7 N -0.68 -11.56 5.01 -439.19 -2.20 -13.76 16 8 C 0.52 12.06 7.88 87.27 0.69 12.75 16 9 O -0.53 -14.28 16.19 -3.23 -0.05 -14.33 16 10 C 0.50 13.84 7.89 87.27 0.69 14.53 16 11 O -0.55 -17.41 16.48 -3.23 -0.05 -17.47 16 12 N -0.69 -19.21 5.55 -464.41 -2.58 -21.79 16 13 C 0.13 4.22 5.67 86.38 0.49 4.71 16 14 C -0.11 -4.01 5.27 30.60 0.16 -3.85 16 15 C 0.02 1.26 4.97 29.85 0.15 1.41 16 16 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 17 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 18 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 19 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 20 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 C 0.04 0.62 7.49 72.36 0.54 1.16 16 25 O -0.39 -6.88 11.24 -148.98 -1.68 -8.56 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.11 0.63 7.96 -2.38 -0.02 0.62 16 30 H 0.11 0.71 8.06 -2.39 -0.02 0.69 16 31 H 0.42 6.16 8.00 -92.71 -0.74 5.42 16 32 H 0.42 10.49 7.94 -92.71 -0.74 9.76 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.01 7.93 -2.39 -0.02 0.99 16 Total: -1.00 -68.48 348.73 -0.10 -68.58 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -0.44 Total: 15.50 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 4.59 Total: 2.11 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -4.49 Total: -91.52 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.78 Total: -40.36 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -68.48 -0.10 -68.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118150731.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.276 kcal (2) G-P(sol) polarization free energy of solvation -68.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds