Wall clock time and date at job start Tue Mar 31 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.55735 * 2 1 4 4 C 1.54993 * 110.62281 * 123.05463 * 2 1 3 5 5 C 1.54805 * 102.09570 * 155.52306 * 4 2 1 6 6 H 1.08997 * 110.60335 * 97.85710 * 5 4 2 7 7 N 1.46505 * 110.48766 * 220.44528 * 5 4 2 8 8 C 1.34780 * 119.99795 * 201.22472 * 7 5 4 9 9 O 1.21347 * 120.00101 * 359.97438 * 8 7 5 10 10 C 1.49457 * 119.99667 * 179.97438 * 8 7 5 11 11 O 1.21348 * 119.99763 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99493 * 179.97438 * 10 8 7 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00113 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47375 * 89.99678 * 20 18 16 22 22 H 1.48508 * 109.47196 * 209.99673 * 20 18 16 23 23 H 1.48504 * 109.47051 * 329.99297 * 20 18 16 24 24 C 1.54095 * 104.18917 * 339.11969 * 5 4 2 25 25 O 1.43747 * 107.29294 * 357.96964 * 24 5 4 26 26 H 1.09004 * 109.46778 * 181.41795 * 1 2 3 27 27 H 1.09000 * 109.46941 * 301.42588 * 1 2 3 28 28 H 1.09004 * 109.46823 * 61.42113 * 1 2 3 29 29 H 1.09008 * 110.90573 * 37.32326 * 4 2 1 30 30 H 1.09004 * 110.90512 * 273.72630 * 4 2 1 31 31 H 0.96995 * 120.00194 * 21.21778 * 7 5 4 32 32 H 0.96996 * 120.00772 * 359.97438 * 12 10 8 33 33 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 34 34 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 35 35 H 1.09002 * 109.47153 * 300.00008 * 14 13 12 36 36 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 37 37 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 38 38 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 39 39 H 0.97008 * 120.00167 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.87690 * 117.39578 * 24 5 4 41 41 H 1.08998 * 109.88184 * 238.39578 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0759 -0.7912 1.2158 5 6 3.4795 -1.2178 0.7215 6 1 4.2423 -0.5367 1.0986 7 7 3.7725 -2.5927 1.1341 8 6 5.0493 -3.0197 1.1975 9 8 5.9561 -2.2654 0.9124 10 6 5.3482 -4.4221 1.6189 11 8 4.4413 -5.1761 1.9044 12 7 6.6249 -4.8491 1.6817 13 6 6.9178 -6.2240 2.0943 14 6 8.4311 -6.4492 2.0805 15 6 8.7371 -7.8847 2.5119 16 6 10.2276 -8.1067 2.4978 17 1 10.8904 -7.3039 2.2102 18 6 10.7453 -9.3343 2.8529 19 7 12.0460 -9.5281 2.8400 20 14 9.5990 -10.7226 3.3510 21 1 9.2208 -11.5078 2.1486 22 1 10.2876 -11.6081 4.3241 23 1 8.3772 -10.1555 3.9763 24 6 3.3839 -1.1242 -0.8136 25 8 2.0384 -0.7335 -1.1349 26 1 -0.3633 -1.0274 0.0254 27 1 -0.3633 0.5358 0.8769 28 1 -0.3633 0.4916 -0.9025 29 1 1.4550 -1.6628 1.4233 30 1 2.1509 -0.1508 2.0947 31 1 3.0476 -3.1957 1.3617 32 1 7.3498 -4.2465 1.4532 33 1 6.5345 -6.3908 3.1010 34 1 6.4410 -6.9200 1.4040 35 1 8.8141 -6.2825 1.0737 36 1 8.9083 -5.7533 2.7705 37 1 8.3542 -8.0510 3.5189 38 1 8.2600 -8.5810 1.8222 39 1 12.4102 -10.3917 3.0902 40 1 4.0854 -0.3764 -1.1837 41 1 3.6071 -2.0938 -1.2587 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118150735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:16 Heat of formation + Delta-G solvation = -130.076151 kcal Electronic energy + Delta-G solvation = -21646.791823 eV Core-core repulsion = 18140.339515 eV Total energy + Delta-G solvation = -3506.452308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.00774 -39.87308 -38.46020 -35.96073 -35.03150 -33.35319 -32.61633 -31.50916 -30.59522 -27.69704 -26.56584 -25.01048 -22.80921 -21.86834 -21.51520 -20.76915 -20.14662 -18.57369 -17.45395 -16.99492 -16.72523 -16.27490 -16.01195 -15.90529 -15.38306 -14.86865 -14.61395 -14.16970 -13.98683 -13.73505 -13.65525 -13.02640 -12.96162 -12.74260 -12.35166 -12.13967 -12.06134 -11.99367 -11.92827 -11.65901 -11.42593 -11.13999 -10.93881 -10.25468 -10.20694 -10.01116 -9.81176 -9.59626 -9.56362 -9.25854 -9.11987 -8.57774 -6.08069 -4.07184 1.26977 2.15775 3.06855 3.29288 3.32348 3.37022 3.40254 3.51005 3.89741 4.21305 4.35698 4.42121 4.42605 4.52929 4.69317 4.82529 5.06023 5.13986 5.22331 5.25530 5.29504 5.40240 5.40484 5.49421 5.53531 5.65340 5.88849 5.89932 6.11045 6.35984 6.39444 6.49935 6.71271 6.76444 7.17760 7.26130 7.31234 7.57348 7.72984 7.91593 8.48078 8.95878 9.53634 11.05076 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.050684 B = 0.002330 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.314118 B =12012.485718 C =12314.034181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.075 0.925 4 C -0.158 4.158 5 C 0.111 3.889 6 H 0.108 0.892 7 N -0.696 5.696 8 C 0.510 3.490 9 O -0.516 6.516 10 C 0.501 3.499 11 O -0.526 6.526 12 N -0.690 5.690 13 C 0.111 3.889 14 C -0.115 4.115 15 C -0.010 4.010 16 C -0.523 4.523 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.037 3.963 25 O -0.372 6.372 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.415 0.585 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.264 0.736 40 H 0.071 0.929 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.783 19.959 -3.972 30.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.093 0.907 4 C -0.196 4.196 5 C 0.005 3.995 6 H 0.126 0.874 7 N -0.351 5.351 8 C 0.291 3.709 9 O -0.391 6.391 10 C 0.281 3.719 11 O -0.403 6.403 12 N -0.342 5.342 13 C -0.011 4.011 14 C -0.153 4.153 15 C -0.048 4.048 16 C -0.561 4.561 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.540 5.540 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.041 4.041 25 O -0.291 6.291 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.252 0.748 32 H 0.249 0.751 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.725 19.763 -4.125 30.398 hybrid contribution -0.215 -0.806 0.451 0.948 sum -22.941 18.957 -3.674 29.985 Atomic orbital electron populations 1.21783 0.92678 1.03209 1.02757 1.23126 0.95668 0.95410 0.84368 0.90682 1.23505 0.94736 1.01856 0.99474 1.22480 0.98359 0.83612 0.95000 0.87371 1.45826 1.08020 1.13573 1.67681 1.20402 0.83481 0.88650 0.78404 1.90775 1.44959 1.56194 1.47171 1.19955 0.84340 0.87655 0.79965 1.90764 1.45016 1.56155 1.48333 1.46022 1.07061 1.15589 1.65524 1.21865 0.98815 0.79907 1.00515 1.21743 0.90619 1.00844 1.02121 1.19503 0.97968 0.91056 0.96313 1.21085 0.90096 0.98908 1.46022 0.90934 1.25035 0.94968 0.98612 0.94903 1.69912 1.11241 1.24148 1.48747 0.86770 0.81417 0.82228 0.78822 1.20237 1.21357 1.18928 1.23635 0.84625 1.01735 0.94137 1.88938 1.27653 1.73690 1.38786 0.91605 0.90897 0.91549 0.89271 0.88922 0.74774 0.75106 0.91055 0.91056 0.91787 0.91780 0.96236 0.96664 0.92669 0.91043 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.66 37.16 0.36 -0.34 16 2 C 0.07 0.43 3.98 -25.68 -0.10 0.33 16 3 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.16 -0.84 6.30 -24.73 -0.16 -1.00 16 5 C 0.11 0.84 3.35 -66.40 -0.22 0.62 16 6 H 0.11 0.85 7.66 -51.93 -0.40 0.45 16 7 N -0.70 -6.37 5.04 -52.75 -0.27 -6.63 16 8 C 0.51 6.11 7.88 -11.58 -0.09 6.02 16 9 O -0.52 -7.08 16.19 5.50 0.09 -7.00 16 10 C 0.50 6.92 7.89 -11.58 -0.09 6.83 16 11 O -0.53 -8.29 16.48 5.50 0.09 -8.19 16 12 N -0.69 -9.58 5.55 -60.73 -0.34 -9.92 16 13 C 0.11 1.75 5.67 -4.04 -0.02 1.72 16 14 C -0.12 -2.10 5.27 -26.74 -0.14 -2.24 16 15 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 16 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 17 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 20 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 24 C 0.04 0.31 7.50 37.73 0.28 0.59 16 25 O -0.37 -3.37 11.22 -35.23 -0.40 -3.77 16 26 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.45 7.65 -51.92 -0.40 0.05 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.42 3.42 7.82 -40.82 -0.32 3.10 16 32 H 0.41 5.25 7.94 -40.82 -0.32 4.92 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 38 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.84 7.93 -51.93 -0.41 0.43 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -32.73 344.82 -6.68 -39.41 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.43 Total: 1.86 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -0.73 Total: -0.96 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.17 Total: -43.36 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.22 Total: -18.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.73 -6.68 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118150735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.670 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds