Wall clock time and date at job start Tue Mar 31 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.55735 * 2 1 4 4 C 1.54993 * 110.62281 * 123.05463 * 2 1 3 5 5 C 1.54805 * 102.09570 * 155.52306 * 4 2 1 6 6 H 1.08997 * 110.60335 * 97.85710 * 5 4 2 7 7 N 1.46505 * 110.48766 * 220.44528 * 5 4 2 8 8 C 1.34780 * 119.99795 * 201.22472 * 7 5 4 9 9 O 1.21347 * 120.00101 * 359.97438 * 8 7 5 10 10 C 1.49457 * 119.99667 * 179.97438 * 8 7 5 11 11 O 1.21348 * 119.99763 * 359.97438 * 10 8 7 12 12 N 1.34771 * 119.99493 * 179.97438 * 10 8 7 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00113 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47375 * 89.99678 * 20 18 16 22 22 H 1.48508 * 109.47196 * 209.99673 * 20 18 16 23 23 H 1.48504 * 109.47051 * 329.99297 * 20 18 16 24 24 C 1.54095 * 104.18917 * 339.11969 * 5 4 2 25 25 O 1.43747 * 107.29294 * 357.96964 * 24 5 4 26 26 H 1.09004 * 109.46778 * 181.41795 * 1 2 3 27 27 H 1.09000 * 109.46941 * 301.42588 * 1 2 3 28 28 H 1.09004 * 109.46823 * 61.42113 * 1 2 3 29 29 H 1.09008 * 110.90573 * 37.32326 * 4 2 1 30 30 H 1.09004 * 110.90512 * 273.72630 * 4 2 1 31 31 H 0.96995 * 120.00194 * 21.21778 * 7 5 4 32 32 H 0.96996 * 120.00772 * 359.97438 * 12 10 8 33 33 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 34 34 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 35 35 H 1.09002 * 109.47153 * 300.00008 * 14 13 12 36 36 H 1.08998 * 109.47533 * 59.99637 * 14 13 12 37 37 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 38 38 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 39 39 H 0.97008 * 120.00167 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.87690 * 117.39578 * 24 5 4 41 41 H 1.08998 * 109.88184 * 238.39578 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0759 -0.7912 1.2158 5 6 3.4795 -1.2178 0.7215 6 1 4.2423 -0.5367 1.0986 7 7 3.7725 -2.5927 1.1341 8 6 5.0493 -3.0197 1.1975 9 8 5.9561 -2.2654 0.9124 10 6 5.3482 -4.4221 1.6189 11 8 4.4413 -5.1761 1.9044 12 7 6.6249 -4.8491 1.6817 13 6 6.9178 -6.2240 2.0943 14 6 8.4311 -6.4492 2.0805 15 6 8.7371 -7.8847 2.5119 16 6 10.2276 -8.1067 2.4978 17 1 10.8904 -7.3039 2.2102 18 6 10.7453 -9.3343 2.8529 19 7 12.0460 -9.5281 2.8400 20 14 9.5990 -10.7226 3.3510 21 1 9.2208 -11.5078 2.1486 22 1 10.2876 -11.6081 4.3241 23 1 8.3772 -10.1555 3.9763 24 6 3.3839 -1.1242 -0.8136 25 8 2.0384 -0.7335 -1.1349 26 1 -0.3633 -1.0274 0.0254 27 1 -0.3633 0.5358 0.8769 28 1 -0.3633 0.4916 -0.9025 29 1 1.4550 -1.6628 1.4233 30 1 2.1509 -0.1508 2.0947 31 1 3.0476 -3.1957 1.3617 32 1 7.3498 -4.2465 1.4532 33 1 6.5345 -6.3908 3.1010 34 1 6.4410 -6.9200 1.4040 35 1 8.8141 -6.2825 1.0737 36 1 8.9083 -5.7533 2.7705 37 1 8.3542 -8.0510 3.5189 38 1 8.2600 -8.5810 1.8222 39 1 12.4102 -10.3917 3.0902 40 1 4.0854 -0.3764 -1.1837 41 1 3.6071 -2.0938 -1.2587 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118150735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:16 Heat of formation + Delta-G solvation = -155.401726 kcal Electronic energy + Delta-G solvation = -21647.890023 eV Core-core repulsion = 18140.339515 eV Total energy + Delta-G solvation = -3507.550507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92150 -40.64468 -39.44223 -37.24513 -35.98155 -35.11051 -33.31093 -33.09834 -31.26664 -29.31975 -27.07936 -26.27051 -24.22990 -22.42710 -22.34064 -22.19876 -21.22804 -19.66020 -18.86649 -18.21090 -17.72370 -17.12292 -17.01915 -16.68058 -16.46321 -16.11865 -16.06653 -15.37707 -14.96215 -14.78064 -14.75714 -14.37605 -13.82391 -13.65829 -13.47694 -13.43066 -12.96190 -12.84838 -12.74396 -12.70446 -12.61563 -12.24253 -11.90998 -11.86472 -11.78396 -11.60813 -11.33709 -10.87243 -10.76923 -10.75480 -10.35253 -10.27436 -8.28441 -6.32917 0.25000 1.20837 1.38565 1.40038 1.51789 2.04635 2.37404 2.52145 2.84248 3.07242 3.29893 3.41676 3.70244 3.92539 3.97622 4.01327 4.16988 4.19267 4.41810 4.47419 4.50347 4.65997 4.73326 4.80673 4.82697 4.85989 4.91849 5.01536 5.07133 5.15633 5.18736 5.30162 5.46134 5.55219 5.64842 5.79766 5.90787 6.27135 6.27958 6.63687 6.75491 6.85796 7.31773 8.88025 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.050684 B = 0.002330 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.314118 B =12012.485718 C =12314.034181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.086 0.914 4 C -0.148 4.148 5 C 0.109 3.891 6 H 0.109 0.891 7 N -0.681 5.681 8 C 0.515 3.485 9 O -0.536 6.536 10 C 0.503 3.497 11 O -0.545 6.545 12 N -0.688 5.688 13 C 0.124 3.876 14 C -0.105 4.105 15 C -0.011 4.011 16 C -0.533 4.533 17 H 0.034 0.966 18 C 0.001 3.999 19 N -0.951 5.951 20 Si 0.951 3.049 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.243 1.243 24 C 0.037 3.963 25 O -0.394 6.394 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.421 0.579 32 H 0.419 0.581 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.024 0.976 39 H 0.266 0.734 40 H 0.074 0.926 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.416 20.465 -3.353 32.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.104 0.896 4 C -0.186 4.186 5 C 0.004 3.996 6 H 0.127 0.873 7 N -0.335 5.335 8 C 0.296 3.704 9 O -0.413 6.413 10 C 0.284 3.716 11 O -0.423 6.423 12 N -0.340 5.340 13 C 0.001 3.999 14 C -0.143 4.143 15 C -0.049 4.049 16 C -0.571 4.571 17 H 0.053 0.947 18 C -0.195 4.195 19 N -0.592 5.592 20 Si 0.774 3.226 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.167 1.167 24 C -0.041 4.041 25 O -0.313 6.313 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.259 0.741 32 H 0.256 0.744 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.398 20.304 -3.514 32.705 hybrid contribution 0.625 -0.863 0.210 1.086 sum -24.773 19.440 -3.304 31.663 Atomic orbital electron populations 1.21806 0.91751 1.03154 1.03556 1.23371 0.96449 0.95742 0.83630 0.89581 1.23515 0.92943 1.02299 0.99865 1.22622 0.99866 0.82474 0.94604 0.87296 1.45820 1.07124 1.14354 1.66213 1.20039 0.84206 0.87620 0.78559 1.90776 1.45680 1.56321 1.48502 1.20224 0.83818 0.88307 0.79286 1.90754 1.45467 1.56885 1.49191 1.45895 1.07593 1.15017 1.65485 1.21558 0.96550 0.80982 1.00812 1.21521 0.92702 0.98116 1.01927 1.19461 0.94377 0.94096 0.96970 1.21478 0.92576 0.97914 1.45104 0.94724 1.26042 0.96612 1.01797 0.95076 1.70071 1.13547 1.25099 1.50498 0.85650 0.79674 0.78483 0.78796 1.19241 1.21219 1.16661 1.23583 0.84751 1.01171 0.94608 1.88922 1.27784 1.74240 1.40384 0.92146 0.88832 0.91977 0.88751 0.86790 0.74078 0.74407 0.90839 0.90893 0.91835 0.91778 0.95616 0.95802 0.92544 0.90793 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.66 71.98 0.70 -0.41 16 2 C 0.07 0.66 3.98 31.28 0.12 0.78 16 3 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 4 C -0.15 -1.22 6.30 31.89 0.20 -1.02 16 5 C 0.11 1.47 3.35 45.98 0.15 1.62 16 6 H 0.11 1.52 7.66 -2.39 -0.02 1.50 16 7 N -0.68 -11.36 5.04 -439.18 -2.21 -13.57 16 8 C 0.52 11.67 7.88 87.27 0.69 12.35 16 9 O -0.54 -14.13 16.19 -3.24 -0.05 -14.18 16 10 C 0.50 13.14 7.89 87.27 0.69 13.83 16 11 O -0.54 -16.26 16.48 -3.24 -0.05 -16.31 16 12 N -0.69 -18.10 5.55 -464.40 -2.58 -20.67 16 13 C 0.12 3.67 5.67 86.38 0.49 4.16 16 14 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 15 C -0.01 -0.49 4.04 29.84 0.12 -0.37 16 16 C -0.53 -30.10 9.66 25.60 0.25 -29.85 16 17 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 18 C 0.00 0.08 5.47 84.65 0.46 0.54 16 19 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 20 Si 0.95 43.71 27.47 68.60 1.88 45.60 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 24 C 0.04 0.59 7.50 72.35 0.54 1.13 16 25 O -0.39 -6.74 11.22 -148.98 -1.67 -8.41 16 26 H 0.06 0.53 8.13 -2.38 -0.02 0.51 16 27 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.71 7.65 -2.38 -0.02 0.69 16 30 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.42 6.16 7.82 -92.71 -0.73 5.43 16 32 H 0.42 10.15 7.94 -92.71 -0.74 9.41 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.03 1.11 7.20 -2.39 -0.02 1.10 16 38 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 39 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.42 7.93 -2.39 -0.02 1.40 16 Total: -1.00 -70.57 344.82 -0.29 -70.85 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -0.48 Total: 16.66 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 4.58 Total: -0.77 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -4.49 Total: -93.43 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.78 Total: -38.90 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Total: -70.57 -0.29 -70.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118150735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.550 kcal (2) G-P(sol) polarization free energy of solvation -70.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds