Wall clock time and date at job start Tue Mar 31 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 110.55151 * 2 1 4 4 C 1.54991 * 110.61707 * 237.11790 * 2 1 3 5 5 C 1.54810 * 102.09350 * 204.31975 * 4 2 1 6 6 H 1.09000 * 110.60064 * 262.15135 * 5 4 2 7 7 N 1.46503 * 110.49226 * 139.55817 * 5 4 2 8 8 C 1.34773 * 120.00139 * 158.78303 * 7 5 4 9 9 O 1.21351 * 120.00246 * 359.97438 * 8 7 5 10 10 C 1.49447 * 119.99889 * 180.02562 * 8 7 5 11 11 O 1.21345 * 120.00250 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99889 * 180.02562 * 10 8 7 13 13 C 1.46503 * 120.00139 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47395 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46980 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46660 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00065 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99486 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00523 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99717 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47154 * 59.99776 * 20 18 16 22 22 H 1.48503 * 109.47430 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47412 * 299.99912 * 20 18 16 24 24 C 1.54106 * 104.18526 * 20.88072 * 5 4 2 25 25 O 1.43745 * 107.29161 * 2.03378 * 24 5 4 26 26 H 1.08999 * 109.47148 * 182.87885 * 1 2 3 27 27 H 1.08994 * 109.47418 * 302.87940 * 1 2 3 28 28 H 1.09008 * 109.46957 * 62.88152 * 1 2 3 29 29 H 1.09005 * 110.90880 * 86.12205 * 4 2 1 30 30 H 1.09005 * 110.90938 * 322.51561 * 4 2 1 31 31 H 0.96998 * 119.99407 * 338.77884 * 7 5 4 32 32 H 0.96998 * 120.00454 * 359.97438 * 12 10 8 33 33 H 1.09001 * 109.47259 * 299.99886 * 13 12 10 34 34 H 1.09002 * 109.46935 * 59.99821 * 13 12 10 35 35 H 1.09001 * 109.47109 * 300.00327 * 14 13 12 36 36 H 1.09002 * 109.46939 * 60.00174 * 14 13 12 37 37 H 1.08994 * 109.47197 * 300.00024 * 15 14 13 38 38 H 1.09002 * 109.47087 * 60.00332 * 15 14 13 39 39 H 0.96999 * 120.00418 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.87542 * 121.45649 * 24 5 4 41 41 H 1.09000 * 109.87721 * 242.60820 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4811 -1.2122 -0.7268 6 1 4.2419 -0.5286 -1.1035 7 7 3.7765 -2.5856 -1.1426 8 6 5.0540 -3.0097 -1.2085 9 8 5.9598 -2.2539 -0.9239 10 6 5.3553 -4.4105 -1.6332 11 8 4.4497 -5.1662 -1.9183 12 7 6.6329 -4.8348 -1.6986 13 6 6.9283 -6.2082 -2.1144 14 6 8.4422 -6.4297 -2.1043 15 6 8.7505 -7.8642 -2.5379 16 6 10.2416 -8.0826 -2.5273 17 1 10.9031 -7.2785 -2.2404 18 6 10.7613 -9.3086 -2.8848 19 7 9.9559 -10.2876 -3.2347 20 14 12.6095 -9.5795 -2.8710 21 1 13.1326 -9.3542 -1.4995 22 1 12.9089 -10.9718 -3.2920 23 1 13.2564 -8.6281 -3.8099 24 6 3.3874 -1.1218 0.8087 25 8 2.0415 -0.7348 1.1327 26 1 -0.3633 -1.0264 0.0516 27 1 -0.3634 0.5578 0.8630 28 1 -0.3633 0.4685 -0.9148 29 1 2.1483 -0.1452 -2.0959 30 1 1.4565 -1.6601 -1.4265 31 1 3.0525 -3.1896 -1.3704 32 1 7.3568 -4.2309 -1.4704 33 1 6.4539 -6.9065 -1.4249 34 1 6.5440 -6.3737 -3.1209 35 1 8.9162 -5.7313 -2.7940 36 1 8.8268 -6.2641 -1.0979 37 1 8.2765 -8.5622 -1.8479 38 1 8.3658 -8.0303 -3.5441 39 1 10.3215 -11.1502 -3.4859 40 1 3.6107 -2.0926 1.2514 41 1 4.0877 -0.3733 1.1793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118150737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:20 Heat of formation + Delta-G solvation = -133.775001 kcal Electronic energy + Delta-G solvation = -21594.700303 eV Core-core repulsion = 18088.087601 eV Total energy + Delta-G solvation = -3506.612702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96203 -39.82881 -38.40157 -35.85989 -34.96797 -33.34519 -32.59532 -31.27315 -30.55715 -27.27738 -26.53241 -24.91836 -22.94349 -21.84809 -21.48517 -20.78757 -20.17592 -18.48376 -17.42256 -16.93354 -16.36395 -16.23729 -15.94319 -15.85937 -15.24940 -14.75389 -14.54373 -14.43819 -13.94073 -13.74399 -13.56707 -13.00492 -12.93768 -12.33102 -12.31434 -12.05497 -11.92932 -11.86306 -11.82254 -11.61373 -11.40212 -10.90465 -10.78247 -10.64532 -10.22839 -9.92055 -9.84327 -9.54398 -9.40937 -9.16196 -9.02453 -8.38943 -6.03776 -4.06991 1.32537 2.21324 3.12759 3.31642 3.34956 3.36297 3.38485 3.56706 3.92732 4.24131 4.40161 4.43722 4.45978 4.55974 4.71856 4.84882 5.08353 5.15769 5.24519 5.32029 5.32340 5.42780 5.51539 5.56169 5.66263 5.67679 5.92446 6.05212 6.22450 6.41945 6.51465 6.65025 6.82866 6.92892 7.32848 7.59836 7.63048 7.71532 7.94113 7.99062 8.35351 8.99235 9.57337 11.07401 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.056436 B = 0.002215 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.016758 B =12636.734387 C =12889.920233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.075 0.925 4 C -0.158 4.158 5 C 0.111 3.889 6 H 0.108 0.892 7 N -0.696 5.696 8 C 0.510 3.490 9 O -0.518 6.518 10 C 0.500 3.500 11 O -0.525 6.525 12 N -0.690 5.690 13 C 0.113 3.887 14 C -0.123 4.123 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.037 3.963 25 O -0.371 6.371 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.415 0.585 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.090 0.910 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.794 21.465 4.828 28.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.093 0.907 4 C -0.196 4.196 5 C 0.005 3.995 6 H 0.126 0.874 7 N -0.351 5.351 8 C 0.291 3.709 9 O -0.393 6.393 10 C 0.280 3.720 11 O -0.402 6.402 12 N -0.342 5.342 13 C -0.009 4.009 14 C -0.161 4.161 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.041 4.041 25 O -0.291 6.291 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.252 0.748 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.882 21.208 4.957 28.180 hybrid contribution 1.223 -0.233 -0.219 1.264 sum -16.660 20.975 4.739 27.202 Atomic orbital electron populations 1.21778 0.92667 1.03302 1.02669 1.23116 0.95650 0.95390 0.84412 0.90735 1.23506 0.94729 1.01907 0.99455 1.22475 0.98310 0.83714 0.94958 0.87405 1.45826 1.08033 1.13636 1.67610 1.20437 0.83443 0.88698 0.78332 1.90767 1.45096 1.56085 1.47323 1.19944 0.84416 0.87595 0.80086 1.90767 1.45130 1.55944 1.48354 1.46076 1.06923 1.15790 1.65399 1.21863 0.98886 0.79609 1.00505 1.21932 0.90585 1.02111 1.01452 1.19029 0.96766 0.88607 0.96905 1.21161 0.91982 0.97326 1.45736 0.92613 1.25029 0.98035 0.96148 0.95251 1.69950 1.34675 1.03111 1.45542 0.86625 0.85535 0.77157 0.78477 1.20225 1.21270 1.20229 1.23647 0.84592 1.01738 0.94149 1.88936 1.27569 1.73682 1.38876 0.91534 0.91622 0.90886 0.88936 0.89254 0.74751 0.75286 0.91027 0.91048 0.92416 0.92407 0.96184 0.96195 0.92847 0.89144 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.66 37.16 0.36 -0.37 16 2 C 0.07 0.45 3.97 -25.68 -0.10 0.35 16 3 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.16 -0.89 6.30 -24.73 -0.16 -1.04 16 5 C 0.11 0.87 3.35 -66.40 -0.22 0.65 16 6 H 0.11 0.88 7.66 -51.93 -0.40 0.48 16 7 N -0.70 -6.64 5.04 -52.75 -0.27 -6.91 16 8 C 0.51 6.34 7.88 -11.59 -0.09 6.25 16 9 O -0.52 -7.28 16.19 5.50 0.09 -7.20 16 10 C 0.50 7.23 7.89 -11.59 -0.09 7.14 16 11 O -0.53 -8.68 16.48 5.50 0.09 -8.59 16 12 N -0.69 -10.09 5.55 -60.73 -0.34 -10.42 16 13 C 0.11 1.91 5.67 -4.04 -0.02 1.89 16 14 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.04 0.32 7.50 37.74 0.28 0.60 16 25 O -0.37 -3.45 11.23 -35.23 -0.40 -3.85 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.48 7.66 -51.93 -0.40 0.08 16 31 H 0.42 3.60 7.82 -40.82 -0.32 3.28 16 32 H 0.41 5.46 7.94 -40.82 -0.32 5.14 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.09 0.87 7.93 -51.93 -0.41 0.46 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -32.17 348.44 -7.05 -39.22 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.47 Total: 1.80 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.73 Total: 0.13 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.13 Total: -43.17 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.22 Total: -19.64 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.17 -7.05 -39.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118150737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.551 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds