Wall clock time and date at job start Tue Mar 31 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 110.55151 * 2 1 4 4 C 1.54991 * 110.61707 * 237.11790 * 2 1 3 5 5 C 1.54810 * 102.09350 * 204.31975 * 4 2 1 6 6 H 1.09000 * 110.60064 * 262.15135 * 5 4 2 7 7 N 1.46503 * 110.49226 * 139.55817 * 5 4 2 8 8 C 1.34773 * 120.00139 * 158.78303 * 7 5 4 9 9 O 1.21351 * 120.00246 * 359.97438 * 8 7 5 10 10 C 1.49447 * 119.99889 * 180.02562 * 8 7 5 11 11 O 1.21345 * 120.00250 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99889 * 180.02562 * 10 8 7 13 13 C 1.46503 * 120.00139 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47395 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46980 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46660 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00065 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99486 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00523 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99717 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47154 * 59.99776 * 20 18 16 22 22 H 1.48503 * 109.47430 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47412 * 299.99912 * 20 18 16 24 24 C 1.54106 * 104.18526 * 20.88072 * 5 4 2 25 25 O 1.43745 * 107.29161 * 2.03378 * 24 5 4 26 26 H 1.08999 * 109.47148 * 182.87885 * 1 2 3 27 27 H 1.08994 * 109.47418 * 302.87940 * 1 2 3 28 28 H 1.09008 * 109.46957 * 62.88152 * 1 2 3 29 29 H 1.09005 * 110.90880 * 86.12205 * 4 2 1 30 30 H 1.09005 * 110.90938 * 322.51561 * 4 2 1 31 31 H 0.96998 * 119.99407 * 338.77884 * 7 5 4 32 32 H 0.96998 * 120.00454 * 359.97438 * 12 10 8 33 33 H 1.09001 * 109.47259 * 299.99886 * 13 12 10 34 34 H 1.09002 * 109.46935 * 59.99821 * 13 12 10 35 35 H 1.09001 * 109.47109 * 300.00327 * 14 13 12 36 36 H 1.09002 * 109.46939 * 60.00174 * 14 13 12 37 37 H 1.08994 * 109.47197 * 300.00024 * 15 14 13 38 38 H 1.09002 * 109.47087 * 60.00332 * 15 14 13 39 39 H 0.96999 * 120.00418 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.87542 * 121.45649 * 24 5 4 41 41 H 1.09000 * 109.87721 * 242.60820 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4811 -1.2122 -0.7268 6 1 4.2419 -0.5286 -1.1035 7 7 3.7765 -2.5856 -1.1426 8 6 5.0540 -3.0097 -1.2085 9 8 5.9598 -2.2539 -0.9239 10 6 5.3553 -4.4105 -1.6332 11 8 4.4497 -5.1662 -1.9183 12 7 6.6329 -4.8348 -1.6986 13 6 6.9283 -6.2082 -2.1144 14 6 8.4422 -6.4297 -2.1043 15 6 8.7505 -7.8642 -2.5379 16 6 10.2416 -8.0826 -2.5273 17 1 10.9031 -7.2785 -2.2404 18 6 10.7613 -9.3086 -2.8848 19 7 9.9559 -10.2876 -3.2347 20 14 12.6095 -9.5795 -2.8710 21 1 13.1326 -9.3542 -1.4995 22 1 12.9089 -10.9718 -3.2920 23 1 13.2564 -8.6281 -3.8099 24 6 3.3874 -1.1218 0.8087 25 8 2.0415 -0.7348 1.1327 26 1 -0.3633 -1.0264 0.0516 27 1 -0.3634 0.5578 0.8630 28 1 -0.3633 0.4685 -0.9148 29 1 2.1483 -0.1452 -2.0959 30 1 1.4565 -1.6601 -1.4265 31 1 3.0525 -3.1896 -1.3704 32 1 7.3568 -4.2309 -1.4704 33 1 6.4539 -6.9065 -1.4249 34 1 6.5440 -6.3737 -3.1209 35 1 8.9162 -5.7313 -2.7940 36 1 8.8268 -6.2641 -1.0979 37 1 8.2765 -8.5622 -1.8479 38 1 8.3658 -8.0303 -3.5441 39 1 10.3215 -11.1502 -3.4859 40 1 3.6107 -2.0926 1.2514 41 1 4.0877 -0.3733 1.1793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118150737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:19 Heat of formation + Delta-G solvation = -157.884884 kcal Electronic energy + Delta-G solvation = -21595.745786 eV Core-core repulsion = 18088.087601 eV Total energy + Delta-G solvation = -3507.658185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.92431 -40.64407 -39.44110 -37.22307 -35.97838 -35.15190 -33.11261 -33.04198 -31.25827 -28.96490 -27.07574 -26.30350 -24.46491 -22.42535 -22.38319 -22.27341 -21.24748 -19.61037 -18.51982 -18.18968 -17.70722 -17.12101 -17.02020 -16.65844 -16.48302 -16.27096 -16.05370 -15.42098 -14.92983 -14.79368 -14.37641 -14.26130 -13.79038 -13.55915 -13.47955 -13.42277 -12.95179 -12.84091 -12.73131 -12.61598 -12.55484 -12.43922 -12.22978 -11.86454 -11.69890 -11.56020 -11.25408 -10.86934 -10.75145 -10.54260 -10.35721 -10.27972 -8.19334 -6.30347 0.24559 1.20205 1.42218 1.44705 1.52611 2.04228 2.41220 2.53009 2.84371 3.14398 3.29863 3.41736 3.70798 3.92692 3.97980 4.07569 4.17677 4.19868 4.42095 4.50483 4.52029 4.66116 4.73240 4.82923 4.85642 4.91129 4.91940 5.07259 5.14455 5.17508 5.22142 5.30541 5.51309 5.70580 5.79013 5.84321 5.90783 6.22236 6.27915 6.63861 6.85785 6.86576 7.38923 8.92252 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.056436 B = 0.002215 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.016758 B =12636.734387 C =12889.920233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.087 0.913 4 C -0.149 4.149 5 C 0.109 3.891 6 H 0.110 0.890 7 N -0.681 5.681 8 C 0.517 3.483 9 O -0.535 6.535 10 C 0.501 3.499 11 O -0.547 6.547 12 N -0.685 5.685 13 C 0.127 3.873 14 C -0.106 4.106 15 C 0.025 3.975 16 C -0.543 4.543 17 H 0.064 0.936 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.285 1.285 23 H -0.266 1.266 24 C 0.037 3.963 25 O -0.394 6.394 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.420 0.580 32 H 0.420 0.580 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.067 0.933 37 H -0.004 1.004 38 H -0.003 1.003 39 H 0.263 0.737 40 H 0.076 0.924 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.685 23.298 4.772 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.105 0.895 4 C -0.187 4.187 5 C 0.004 3.996 6 H 0.128 0.872 7 N -0.335 5.335 8 C 0.298 3.702 9 O -0.411 6.411 10 C 0.282 3.718 11 O -0.425 6.425 12 N -0.338 5.338 13 C 0.004 3.996 14 C -0.144 4.144 15 C -0.013 4.013 16 C -0.581 4.581 17 H 0.083 0.917 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.790 3.210 21 H -0.192 1.192 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.041 4.041 25 O -0.313 6.313 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.259 0.741 32 H 0.257 0.743 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.798 23.080 4.911 29.556 hybrid contribution 1.095 -0.776 -0.183 1.354 sum -16.703 22.304 4.727 28.263 Atomic orbital electron populations 1.21803 0.91756 1.03051 1.03657 1.23362 0.96421 0.95747 0.83631 0.89529 1.23520 0.92923 1.02339 0.99909 1.22636 0.99862 0.82454 0.94617 0.87187 1.45827 1.07073 1.14493 1.66128 1.19969 0.84244 0.87449 0.78562 1.90768 1.45738 1.56064 1.48556 1.20302 0.83828 0.88418 0.79295 1.90758 1.45691 1.56836 1.49263 1.45881 1.07585 1.14911 1.65390 1.21486 0.97111 0.80891 1.00126 1.21642 0.92304 0.98505 1.01937 1.18934 0.95510 0.91753 0.95114 1.21653 0.93450 0.97713 1.45304 0.91743 1.25991 1.03205 0.95964 0.94848 1.70089 1.36936 1.03628 1.46633 0.85493 0.79369 0.77140 0.78988 1.19192 1.21088 1.19134 1.23596 0.84751 1.01194 0.94556 1.88920 1.27709 1.74243 1.40459 0.92262 0.91878 0.88817 0.86752 0.88847 0.74125 0.74284 0.91752 0.91646 0.91383 0.91467 0.98566 0.98507 0.92791 0.90531 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.66 71.98 0.70 -0.48 16 2 C 0.07 0.69 3.97 31.28 0.12 0.81 16 3 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.15 -1.31 6.30 31.89 0.20 -1.11 16 5 C 0.11 1.53 3.35 45.98 0.15 1.68 16 6 H 0.11 1.57 7.66 -2.39 -0.02 1.55 16 7 N -0.68 -12.05 5.04 -439.17 -2.21 -14.26 16 8 C 0.52 12.26 7.88 87.27 0.69 12.95 16 9 O -0.53 -14.35 16.19 -3.25 -0.05 -14.40 16 10 C 0.50 14.08 7.89 87.27 0.69 14.77 16 11 O -0.55 -17.81 16.48 -3.23 -0.05 -17.86 16 12 N -0.69 -19.41 5.55 -464.41 -2.58 -21.99 16 13 C 0.13 4.26 5.67 86.38 0.49 4.75 16 14 C -0.11 -4.02 5.27 30.59 0.16 -3.86 16 15 C 0.02 1.25 4.97 29.85 0.15 1.40 16 16 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 18 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 19 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 20 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C 0.04 0.61 7.50 72.36 0.54 1.15 16 25 O -0.39 -6.92 11.23 -148.98 -1.67 -8.59 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.09 0.78 7.66 -2.38 -0.02 0.76 16 31 H 0.42 6.70 7.82 -92.71 -0.73 5.97 16 32 H 0.42 10.58 7.94 -92.71 -0.74 9.84 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.08 1.45 7.93 -2.39 -0.02 1.43 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.80 348.44 -0.09 -68.90 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.42 Total: 16.06 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 4.59 Total: 2.49 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -4.51 Total: -92.34 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -1.78 Total: -40.86 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -68.80 -0.09 -68.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118150737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.990 kcal (2) G-P(sol) polarization free energy of solvation -68.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds