Wall clock time and date at job start Tue Mar 31 2020 06:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48502 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 300.00055 * 3 2 1 6 6 H 1.48507 * 109.47054 * 60.00094 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46498 * 113.58269 * 139.33921 * 15 14 12 17 17 C 1.34781 * 119.99983 * 107.27819 * 16 15 14 18 18 O 1.21281 * 120.00042 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99605 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.46841 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47335 * 180.02562 * 20 19 17 22 22 F 1.39905 * 109.47533 * 179.97438 * 21 20 19 23 23 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 24 24 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 26 26 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 27 27 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 28 28 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 29 29 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 30 30 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 31 31 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 32 32 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 33 33 H 1.09009 * 113.57633 * 270.12923 * 15 14 12 34 34 H 0.97003 * 119.99770 * 287.27692 * 16 15 14 35 35 H 1.08996 * 109.46903 * 299.99749 * 19 17 16 36 36 H 1.08995 * 109.47183 * 60.00072 * 19 17 16 37 37 H 1.09003 * 109.47214 * 300.00016 * 20 19 17 38 38 H 1.09004 * 109.47595 * 59.99747 * 20 19 17 39 39 H 1.09004 * 109.47012 * 299.99534 * 21 20 19 40 40 H 1.08998 * 109.47529 * 59.99542 * 21 20 19 41 41 H 1.08990 * 113.66878 * 265.09053 * 23 12 11 42 42 H 1.09000 * 113.66430 * 36.05678 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.4983 -8.9404 1.1278 17 6 3.3830 -9.7149 1.7866 18 8 4.1225 -9.2230 2.6125 19 6 3.4541 -11.1920 1.4960 20 6 4.5326 -11.8326 2.3719 21 6 4.6053 -13.3320 2.0765 22 9 5.5920 -13.9178 2.8770 23 6 1.0599 -6.8787 1.0890 24 1 -0.4850 0.8401 -0.0004 25 1 0.3556 -2.3881 -0.0023 26 1 3.0653 -3.5642 -0.4088 27 1 1.5973 -5.1293 -1.5917 28 1 0.1782 -4.6962 -0.5422 29 1 1.1318 -4.1478 1.9482 30 1 2.9356 -4.3598 1.9065 31 1 2.9951 -7.1043 -0.6938 32 1 3.9799 -6.1903 0.5299 33 1 2.8043 -7.2489 2.4010 34 1 1.9071 -9.3338 0.4669 35 1 2.4897 -11.6516 1.7120 36 1 3.7020 -11.3441 0.4455 37 1 5.4970 -11.3729 2.1554 38 1 4.2853 -11.6805 3.4225 39 1 3.6411 -13.7921 2.2927 40 1 4.8529 -13.4839 1.0259 41 1 0.4691 -6.6421 1.9737 42 1 0.4936 -7.4251 0.3348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121562557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:52 Heat of formation + Delta-G solvation = -52.252306 kcal Electronic energy + Delta-G solvation = -21588.754415 eV Core-core repulsion = 18098.049592 eV Total energy + Delta-G solvation = -3490.704823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.97023 -40.62778 -39.35910 -35.97554 -34.36790 -33.66944 -32.18136 -29.59231 -27.73987 -25.79944 -25.20556 -24.25668 -23.08667 -21.84232 -20.63162 -20.04009 -17.86782 -17.34134 -17.04186 -16.92852 -16.49346 -15.85725 -15.59315 -15.20835 -15.07450 -14.67974 -14.24444 -13.93315 -13.66403 -13.42480 -12.88322 -12.60591 -12.50998 -12.36075 -11.99063 -11.88239 -11.64162 -11.46725 -11.28410 -11.20064 -11.08224 -10.86577 -10.77565 -10.31970 -10.06778 -9.97321 -9.80575 -9.70098 -9.39265 -9.11384 -8.86113 -6.95026 -5.77964 -3.06281 2.40245 2.93521 3.42980 3.49002 3.51052 4.16251 4.27368 4.31254 4.53740 4.57039 4.58319 4.66534 4.76848 4.77611 4.81538 4.89271 5.03101 5.26305 5.38058 5.44905 5.51735 5.55995 5.68052 5.78917 5.80677 5.90287 5.93100 5.96364 6.09358 6.18503 6.24225 6.35457 6.40996 6.49472 6.64537 6.92775 7.13431 7.31122 7.71072 8.01868 8.40980 9.52091 10.10710 10.45054 11.44585 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.051855 B = 0.002275 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.835948 B =12305.156883 C =12594.975901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.168 3.832 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.142 4.142 14 C -0.125 4.125 15 C 0.122 3.878 16 N -0.720 5.720 17 C 0.511 3.489 18 O -0.539 6.539 19 C -0.140 4.140 20 C -0.140 4.140 21 C 0.062 3.938 22 F -0.218 7.218 23 C -0.131 4.131 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.400 0.600 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -26.458 0.285 26.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.056 3.944 11 C -0.175 4.175 12 C -0.103 4.103 13 C -0.183 4.183 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.370 5.370 17 C 0.297 3.703 18 O -0.416 6.416 19 C -0.180 4.180 20 C -0.178 4.178 21 C 0.007 3.993 22 F -0.199 7.199 23 C -0.169 4.169 24 H 0.064 0.936 25 H 0.219 0.781 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.267 -25.929 0.897 26.293 hybrid contribution -0.241 0.714 -0.315 0.817 sum 4.026 -25.216 0.581 25.542 Atomic orbital electron populations 1.69671 1.05125 1.25568 1.57782 1.24767 0.95540 0.97786 1.02981 0.86117 0.78832 0.84094 0.77165 1.20519 1.21883 1.21867 1.19365 0.91128 0.84256 1.42500 0.91044 1.42425 1.05734 0.99939 1.87036 1.21536 0.95265 0.84860 0.92695 1.23268 1.00572 0.97236 0.96400 1.22096 0.96212 0.92423 0.99548 1.23605 1.01351 0.93598 0.99763 1.23138 0.98350 0.96322 0.98507 1.22625 0.97677 0.77799 1.00109 1.46097 1.39131 1.09153 1.42620 1.20609 0.80058 0.88797 0.80862 1.90734 1.41598 1.75444 1.33802 1.21560 1.01409 0.92813 1.02234 1.21916 1.00419 0.93759 1.01706 1.22004 0.89940 0.93088 0.94287 1.92780 1.65038 1.85655 1.76463 1.23173 0.95539 0.96992 1.01177 0.93557 0.78131 0.90800 0.92286 0.90211 0.90121 0.92525 0.89939 0.90949 0.86859 0.76623 0.88542 0.88510 0.89864 0.89893 0.90738 0.90724 0.90848 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.71 -17.87 5.40 -52.47 -0.28 -18.16 16 10 C 0.17 3.31 4.48 -66.95 -0.30 3.01 16 11 C -0.14 -2.16 7.59 -26.28 -0.20 -2.36 16 12 C -0.10 -1.39 1.11 -154.71 -0.17 -1.56 16 13 C -0.14 -2.44 7.64 -26.28 -0.20 -2.64 16 14 C -0.12 -1.50 7.64 -26.28 -0.20 -1.70 16 15 C 0.12 1.37 4.24 -66.95 -0.28 1.09 16 16 N -0.72 -6.18 5.35 -52.85 -0.28 -6.47 16 17 C 0.51 5.02 7.83 -10.98 -0.09 4.94 16 18 O -0.54 -7.86 15.58 5.56 0.09 -7.77 16 19 C -0.14 -0.76 5.70 -27.88 -0.16 -0.92 16 20 C -0.14 -0.97 4.96 -26.74 -0.13 -1.10 16 21 C 0.06 0.33 7.55 37.15 0.28 0.61 16 22 F -0.22 -1.98 17.36 2.25 0.04 -1.94 16 23 C -0.13 -1.44 7.59 -26.28 -0.20 -1.64 16 24 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.38 10.19 7.92 -40.82 -0.32 9.87 16 26 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.11 1.53 7.47 -51.92 -0.39 1.14 16 34 H 0.40 2.20 8.73 -40.82 -0.36 1.84 16 35 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -33.26 351.64 -8.29 -41.55 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.95 Total: 7.19 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -1.90 Total: -9.67 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.16 Total: -52.09 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.26 -8.29 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121562557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.704 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds