Wall clock time and date at job start Tue Mar 31 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48502 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47161 * 300.00055 * 3 2 1 6 6 H 1.48507 * 109.47054 * 60.00094 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46498 * 113.58269 * 139.33921 * 15 14 12 17 17 C 1.34781 * 119.99983 * 107.27819 * 16 15 14 18 18 O 1.21281 * 120.00042 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99605 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.46841 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47335 * 180.02562 * 20 19 17 22 22 F 1.39905 * 109.47533 * 179.97438 * 21 20 19 23 23 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 24 24 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 26 26 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 27 27 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 28 28 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 29 29 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 30 30 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 31 31 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 32 32 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 33 33 H 1.09009 * 113.57633 * 270.12923 * 15 14 12 34 34 H 0.97003 * 119.99770 * 287.27692 * 16 15 14 35 35 H 1.08996 * 109.46903 * 299.99749 * 19 17 16 36 36 H 1.08995 * 109.47183 * 60.00072 * 19 17 16 37 37 H 1.09003 * 109.47214 * 300.00016 * 20 19 17 38 38 H 1.09004 * 109.47595 * 59.99747 * 20 19 17 39 39 H 1.09004 * 109.47012 * 299.99534 * 21 20 19 40 40 H 1.08998 * 109.47529 * 59.99542 * 21 20 19 41 41 H 1.08990 * 113.66878 * 265.09053 * 23 12 11 42 42 H 1.09000 * 113.66430 * 36.05678 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.4983 -8.9404 1.1278 17 6 3.3830 -9.7149 1.7866 18 8 4.1225 -9.2230 2.6125 19 6 3.4541 -11.1920 1.4960 20 6 4.5326 -11.8326 2.3719 21 6 4.6053 -13.3320 2.0765 22 9 5.5920 -13.9178 2.8770 23 6 1.0599 -6.8787 1.0890 24 1 -0.4850 0.8401 -0.0004 25 1 0.3556 -2.3881 -0.0023 26 1 3.0653 -3.5642 -0.4088 27 1 1.5973 -5.1293 -1.5917 28 1 0.1782 -4.6962 -0.5422 29 1 1.1318 -4.1478 1.9482 30 1 2.9356 -4.3598 1.9065 31 1 2.9951 -7.1043 -0.6938 32 1 3.9799 -6.1903 0.5299 33 1 2.8043 -7.2489 2.4010 34 1 1.9071 -9.3338 0.4669 35 1 2.4897 -11.6516 1.7120 36 1 3.7020 -11.3441 0.4455 37 1 5.4970 -11.3729 2.1554 38 1 4.2853 -11.6805 3.4225 39 1 3.6411 -13.7921 2.2927 40 1 4.8529 -13.4839 1.0259 41 1 0.4691 -6.6421 1.9737 42 1 0.4936 -7.4251 0.3348 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121562557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:51 Heat of formation + Delta-G solvation = -74.497627 kcal Electronic energy + Delta-G solvation = -21589.719045 eV Core-core repulsion = 18098.049592 eV Total energy + Delta-G solvation = -3491.669453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.52959 -41.66621 -40.31945 -37.27947 -35.25386 -34.94201 -33.53480 -31.42778 -28.30559 -26.75976 -26.58379 -26.10704 -24.07711 -22.70595 -21.48663 -21.29753 -19.42070 -18.67690 -18.07835 -17.41438 -17.31809 -16.91322 -16.48286 -16.21697 -16.06265 -15.80465 -15.66799 -15.19100 -14.90907 -14.45432 -14.24503 -13.76466 -13.61892 -13.18120 -13.08662 -12.98899 -12.87779 -12.83396 -12.42835 -12.36325 -12.30206 -12.10871 -11.98300 -11.85207 -11.51818 -11.28192 -11.06256 -10.97786 -10.82795 -10.64686 -9.96500 -8.98145 -7.96022 -5.23785 1.46042 1.46665 1.56779 1.67302 2.24379 2.55334 3.35430 3.50680 3.54974 3.62018 3.72790 3.78209 3.85123 3.92420 3.99641 4.19730 4.28155 4.30581 4.36029 4.46935 4.52219 4.61725 4.71409 4.80528 4.82046 4.84030 4.94407 5.00954 5.03759 5.06457 5.10651 5.15034 5.26092 5.31906 5.43921 5.56669 5.66559 5.70573 6.27111 6.64703 7.32642 7.34367 8.10757 8.33556 9.27422 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.051855 B = 0.002275 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.835948 B =12305.156883 C =12594.975901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.728 5.728 10 C 0.145 3.855 11 C -0.121 4.121 12 C -0.091 4.091 13 C -0.141 4.141 14 C -0.119 4.119 15 C 0.127 3.873 16 N -0.705 5.705 17 C 0.503 3.497 18 O -0.596 6.596 19 C -0.127 4.127 20 C -0.140 4.140 21 C 0.059 3.941 22 F -0.243 7.243 23 C -0.115 4.115 24 H 0.251 0.749 25 H 0.374 0.626 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.420 0.580 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 -28.985 -1.143 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.375 4.375 8 H 0.092 0.908 9 N -0.366 5.366 10 C 0.036 3.964 11 C -0.160 4.160 12 C -0.092 4.092 13 C -0.181 4.181 14 C -0.157 4.157 15 C 0.022 3.978 16 N -0.356 5.356 17 C 0.292 3.708 18 O -0.477 6.477 19 C -0.167 4.167 20 C -0.178 4.178 21 C 0.005 3.995 22 F -0.224 7.224 23 C -0.153 4.153 24 H 0.060 0.940 25 H 0.206 0.794 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.258 0.742 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.043 -28.524 -0.560 28.814 hybrid contribution -0.125 1.450 0.144 1.462 sum 3.917 -27.074 -0.415 27.359 Atomic orbital electron populations 1.69817 1.06526 1.25951 1.59711 1.25564 0.96440 1.01081 1.03922 0.85091 0.78196 0.79921 0.76674 1.19202 1.21883 1.22143 1.19729 0.91444 0.85555 1.40745 0.90846 1.42602 1.05374 1.01061 1.87548 1.21926 0.95344 0.84122 0.95006 1.23094 0.99758 0.95246 0.97864 1.21907 0.98042 0.92058 0.97214 1.23406 1.00470 0.95762 0.98478 1.23170 0.96751 0.95801 1.00006 1.22264 0.97510 0.79541 0.98511 1.45916 1.39143 1.07849 1.42727 1.21458 0.78979 0.90631 0.79730 1.90722 1.43853 1.76768 1.36334 1.21578 1.02445 0.89065 1.03583 1.21864 0.99879 0.95244 1.00827 1.22243 0.90513 0.91567 0.95220 1.92731 1.66321 1.85972 1.77387 1.23139 0.95348 0.95220 1.01639 0.94029 0.79388 0.91380 0.90573 0.90646 0.91610 0.93074 0.87474 0.92517 0.89656 0.74214 0.85198 0.85240 0.92293 0.92237 0.88125 0.88182 0.91204 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 7 C -0.24 -13.73 9.97 84.03 0.84 -12.89 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.73 -37.23 5.40 -319.92 -1.73 -38.96 16 10 C 0.15 5.76 4.48 45.63 0.20 5.96 16 11 C -0.12 -3.66 7.59 30.89 0.23 -3.42 16 12 C -0.09 -2.34 1.11 -52.31 -0.06 -2.40 16 13 C -0.14 -4.88 7.64 30.88 0.24 -4.64 16 14 C -0.12 -2.60 7.64 30.88 0.24 -2.37 16 15 C 0.13 2.62 4.24 45.63 0.19 2.81 16 16 N -0.70 -9.92 5.35 -439.50 -2.35 -12.27 16 17 C 0.50 8.92 7.83 87.66 0.69 9.60 16 18 O -0.60 -17.52 15.58 -3.03 -0.05 -17.56 16 19 C -0.13 -0.93 5.70 29.85 0.17 -0.76 16 20 C -0.14 -1.76 4.96 30.59 0.15 -1.60 16 21 C 0.06 0.48 7.55 71.98 0.54 1.02 16 22 F -0.24 -4.18 17.36 44.97 0.78 -3.40 16 23 C -0.12 -2.23 7.59 30.88 0.23 -2.00 16 24 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 25 H 0.37 20.37 7.92 -92.71 -0.73 19.63 16 26 H 0.07 2.74 8.10 -2.39 -0.02 2.72 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.11 1.87 8.14 -2.38 -0.02 1.86 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 2.30 7.47 -2.38 -0.02 2.28 16 34 H 0.42 2.59 8.73 -92.71 -0.81 1.78 16 35 H 0.13 0.16 8.14 -2.39 -0.02 0.15 16 36 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 38 H 0.06 1.01 8.10 -2.38 -0.02 0.99 16 39 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.11 1.56 8.12 -2.39 -0.02 1.54 16 Total: -1.00 -76.02 351.64 2.57 -73.44 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.53 Total: 24.21 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.14 Total: -14.76 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -3.80 Total: -110.76 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.05 Total: -17.56 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.40 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -76.02 2.57 -73.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121562557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.056 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds