Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48502 * 109.47033 * 274.99986 * 3 2 1 5 5 H 1.48498 * 109.46795 * 34.99867 * 3 2 1 6 6 H 1.48494 * 109.47001 * 154.99985 * 3 2 1 7 7 C 1.37874 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99735 * 175.11963 * 7 2 1 9 9 C 1.50694 * 120.00164 * 355.12635 * 7 2 1 10 10 H 1.09001 * 109.52458 * 305.31646 * 9 7 2 11 11 C 1.53046 * 109.49758 * 185.23764 * 9 7 2 12 12 C 1.53046 * 109.53723 * 178.67782 * 11 9 7 13 13 C 1.52765 * 109.37979 * 61.24194 * 12 11 9 14 14 N 1.46919 * 109.00751 * 305.58712 * 13 12 11 15 15 C 1.34779 * 120.63090 * 233.58550 * 14 13 12 16 16 O 1.21588 * 120.00462 * 184.75158 * 15 14 13 17 17 N 1.34778 * 119.99617 * 4.74972 * 15 14 13 18 18 C 1.46500 * 119.99948 * 174.90318 * 17 15 14 19 19 C 1.52998 * 109.47185 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.47392 * 179.97438 * 19 18 17 21 21 C 1.50692 * 109.47258 * 179.97438 * 20 19 18 22 22 O 1.20827 * 120.00460 * 359.72365 * 21 20 19 23 23 O 1.34229 * 119.99908 * 180.02562 * 21 20 19 24 24 C 1.46927 * 118.74267 * 53.31217 * 14 13 12 25 25 H 0.96997 * 119.99740 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.45915 * 298.69837 * 11 9 7 27 27 H 1.08998 * 109.45849 * 58.67754 * 11 9 7 28 28 H 1.08997 * 109.49312 * 181.31580 * 12 11 9 29 29 H 1.08993 * 109.49932 * 301.38299 * 12 11 9 30 30 H 1.09000 * 109.51116 * 185.70253 * 13 12 11 31 31 H 1.09004 * 109.43273 * 65.42106 * 13 12 11 32 32 H 0.97002 * 120.00449 * 354.89379 * 17 15 14 33 33 H 1.08997 * 109.47341 * 59.99566 * 18 17 15 34 34 H 1.08998 * 109.46954 * 299.99639 * 18 17 15 35 35 H 1.08997 * 109.47390 * 59.99529 * 19 18 17 36 36 H 1.08998 * 109.46826 * 299.99651 * 19 18 17 37 37 H 1.09005 * 109.46776 * 59.99909 * 20 19 18 38 38 H 1.09003 * 109.47163 * 300.00305 * 20 19 18 39 39 H 0.96703 * 117.00432 * 179.72485 * 23 21 20 40 40 H 1.08997 * 109.58699 * 66.42687 * 24 14 13 41 41 H 1.09004 * 109.58976 * 186.85870 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1075 -1.3948 5 1 1.5034 2.6198 0.8030 6 1 3.5955 1.4120 0.5917 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0790 9 6 1.2551 -2.4967 0.1120 10 1 0.6223 -2.4781 0.9993 11 6 2.2527 -3.6523 0.2203 12 6 1.4927 -4.9726 0.3667 13 6 0.6242 -5.1973 -0.8699 14 7 -0.2369 -4.0238 -1.0695 15 6 -1.5723 -4.1639 -1.1866 16 8 -2.2654 -3.1970 -1.4376 17 7 -2.1393 -5.3760 -1.0256 18 6 -3.5981 -5.5102 -1.0418 19 6 -3.9774 -6.9784 -0.8386 20 6 -5.5010 -7.1185 -0.8548 21 6 -5.8746 -8.5647 -0.6553 22 8 -5.0109 -9.3987 -0.5196 23 8 -7.1668 -8.9273 -0.6345 24 6 0.3846 -2.6940 -1.1330 25 1 -0.4849 0.8400 0.0004 26 1 2.8687 -3.6856 -0.6783 27 1 2.8896 -3.5016 1.0919 28 1 2.2038 -5.7924 0.4672 29 1 0.8580 -4.9308 1.2518 30 1 0.0064 -6.0835 -0.7246 31 1 1.2635 -5.3340 -1.7421 32 1 -1.5816 -6.1595 -0.8991 33 1 -3.9842 -5.1641 -2.0005 34 1 -4.0270 -4.9101 -0.2393 35 1 -3.5913 -7.3241 0.1203 36 1 -3.5484 -7.5788 -1.6408 37 1 -5.8874 -6.7727 -1.8137 38 1 -5.9297 -6.5181 -0.0525 39 1 -7.3572 -9.8669 -0.5078 40 1 1.0039 -2.6224 -2.0270 41 1 -0.3914 -1.9289 -1.1612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121815460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = -133.534731 kcal Electronic energy + Delta-G solvation = -22496.427059 eV Core-core repulsion = 18989.824776 eV Total energy + Delta-G solvation = -3506.602283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58332 -39.68156 -37.06666 -36.55556 -35.40506 -33.48439 -32.52954 -31.59432 -29.75824 -27.54540 -25.03778 -24.36773 -22.70457 -21.78236 -21.12468 -20.01027 -18.72111 -18.39816 -17.50182 -16.89352 -16.67620 -16.14829 -15.58280 -15.35936 -14.60397 -14.31587 -14.00360 -13.71337 -13.57579 -13.33017 -12.97525 -12.62092 -12.57841 -12.40713 -12.05433 -11.89628 -11.85329 -11.65515 -11.15188 -10.99911 -10.92920 -10.85516 -10.49914 -10.36799 -10.22741 -9.83700 -9.43853 -9.05549 -8.90316 -8.72650 -8.43239 -7.61212 -5.96896 -4.04987 1.86736 2.63157 3.28079 3.34225 3.40439 3.43301 3.87952 4.32997 4.46167 4.57765 4.63454 4.73702 5.16658 5.23676 5.27319 5.32825 5.33681 5.53076 5.56659 5.65573 5.93058 5.96918 6.02155 6.15268 6.18810 6.34319 6.61903 6.68351 6.82795 6.83703 7.00987 7.08721 7.36551 7.52934 7.54175 7.76238 7.94875 8.07499 8.43501 8.61000 8.99331 9.27565 9.60495 11.08896 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030203 B = 0.003134 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.834776 B = 8931.675872 C = 9609.556433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.030 0.970 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.701 3.299 16 O -0.585 6.585 17 N -0.758 5.758 18 C 0.140 3.860 19 C -0.122 4.122 20 C -0.111 4.111 21 C 0.479 3.521 22 O -0.516 6.516 23 O -0.519 6.519 24 C 0.131 3.869 25 H 0.263 0.737 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.410 0.590 40 H 0.039 0.961 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.207 -17.304 -1.499 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.402 3.598 16 O -0.462 6.462 17 N -0.418 5.418 18 C 0.015 3.985 19 C -0.160 4.160 20 C -0.149 4.149 21 C 0.322 3.678 22 O -0.404 6.404 23 O -0.331 6.331 24 C 0.010 3.990 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.228 0.772 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.268 0.732 40 H 0.058 0.942 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.552 -16.230 -1.698 18.909 hybrid contribution 0.600 -0.228 0.193 0.670 sum -8.952 -16.458 -1.505 18.795 Atomic orbital electron populations 1.69930 1.05747 1.26779 1.49107 1.25062 0.94860 0.99244 0.94855 0.86593 0.79885 0.83638 0.77967 1.20740 1.21194 1.19913 1.21068 0.93142 0.90180 1.51602 0.92398 1.19004 0.92627 0.92071 0.94303 0.95151 1.21621 0.98575 0.94116 1.00456 1.21879 0.98669 0.99140 0.97552 1.21405 0.93343 0.87779 0.98320 1.47795 1.03645 1.09505 1.74980 1.15930 0.82531 0.82864 0.78436 1.90915 1.61575 1.38111 1.55621 1.45273 1.06809 1.08868 1.80875 1.21006 0.80602 0.94483 1.02364 1.21624 0.93134 0.96880 1.04325 1.21258 0.97858 0.89380 1.06368 1.23561 0.79762 0.92624 0.71843 1.90741 1.50436 1.53673 1.45594 1.84547 1.29028 1.34815 1.84703 1.22191 0.98136 0.80186 0.98463 0.92716 0.93240 0.93026 0.92316 0.92205 0.92125 0.92162 0.77247 0.91601 0.91627 0.90299 0.90357 0.87034 0.86992 0.73151 0.94247 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 11.61 55.43 0.64 -25.20 16 2 C 0.06 1.75 5.36 -17.82 -0.10 1.66 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.19 8.49 -34.44 -0.29 -14.48 16 8 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 9 C 0.04 0.97 2.19 -91.65 -0.20 0.77 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -2.19 5.11 -26.68 -0.14 -2.33 16 12 C -0.13 -2.15 6.07 -26.83 -0.16 -2.32 16 13 C 0.12 1.80 6.40 -3.93 -0.03 1.77 16 14 N -0.62 -12.66 2.98 -178.76 -0.53 -13.19 16 15 C 0.70 14.40 8.30 -86.91 -0.72 13.67 16 16 O -0.58 -14.69 15.79 5.29 0.08 -14.60 16 17 N -0.76 -11.25 5.47 -65.23 -0.36 -11.61 16 18 C 0.14 1.69 5.68 -4.04 -0.02 1.67 16 19 C -0.12 -1.07 4.62 -26.73 -0.12 -1.19 16 20 C -0.11 -0.76 5.81 -27.88 -0.16 -0.92 16 21 C 0.48 3.98 8.33 36.00 0.30 4.28 16 22 O -0.52 -6.00 16.74 -18.75 -0.31 -6.31 16 23 O -0.52 -3.23 13.42 -39.26 -0.53 -3.76 16 24 C 0.13 3.21 5.46 -3.71 -0.02 3.19 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.74 5.57 -51.93 -0.29 0.46 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.39 4.77 5.93 -40.82 -0.24 4.53 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.41 0.94 9.10 45.56 0.41 1.36 16 40 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.12 3.40 5.38 -51.93 -0.28 3.12 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -35.27 336.48 -8.05 -43.31 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.43 Total: 4.16 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.66 Total: 5.79 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.25 Total: -49.99 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.76 Total: -24.68 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.27 -8.05 -43.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121815460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.221 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds