Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48502 * 109.47033 * 274.99986 * 3 2 1 5 5 H 1.48498 * 109.46795 * 34.99867 * 3 2 1 6 6 H 1.48494 * 109.47001 * 154.99985 * 3 2 1 7 7 C 1.37874 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99735 * 175.11963 * 7 2 1 9 9 C 1.50694 * 120.00164 * 355.12635 * 7 2 1 10 10 H 1.09001 * 109.52458 * 305.31646 * 9 7 2 11 11 C 1.53046 * 109.49758 * 185.23764 * 9 7 2 12 12 C 1.53046 * 109.53723 * 178.67782 * 11 9 7 13 13 C 1.52765 * 109.37979 * 61.24194 * 12 11 9 14 14 N 1.46919 * 109.00751 * 305.58712 * 13 12 11 15 15 C 1.34779 * 120.63090 * 233.58550 * 14 13 12 16 16 O 1.21588 * 120.00462 * 184.75158 * 15 14 13 17 17 N 1.34778 * 119.99617 * 4.74972 * 15 14 13 18 18 C 1.46500 * 119.99948 * 174.90318 * 17 15 14 19 19 C 1.52998 * 109.47185 * 180.02562 * 18 17 15 20 20 C 1.53004 * 109.47392 * 179.97438 * 19 18 17 21 21 C 1.50692 * 109.47258 * 179.97438 * 20 19 18 22 22 O 1.20827 * 120.00460 * 359.72365 * 21 20 19 23 23 O 1.34229 * 119.99908 * 180.02562 * 21 20 19 24 24 C 1.46927 * 118.74267 * 53.31217 * 14 13 12 25 25 H 0.96997 * 119.99740 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.45915 * 298.69837 * 11 9 7 27 27 H 1.08998 * 109.45849 * 58.67754 * 11 9 7 28 28 H 1.08997 * 109.49312 * 181.31580 * 12 11 9 29 29 H 1.08993 * 109.49932 * 301.38299 * 12 11 9 30 30 H 1.09000 * 109.51116 * 185.70253 * 13 12 11 31 31 H 1.09004 * 109.43273 * 65.42106 * 13 12 11 32 32 H 0.97002 * 120.00449 * 354.89379 * 17 15 14 33 33 H 1.08997 * 109.47341 * 59.99566 * 18 17 15 34 34 H 1.08998 * 109.46954 * 299.99639 * 18 17 15 35 35 H 1.08997 * 109.47390 * 59.99529 * 19 18 17 36 36 H 1.08998 * 109.46826 * 299.99651 * 19 18 17 37 37 H 1.09005 * 109.46776 * 59.99909 * 20 19 18 38 38 H 1.09003 * 109.47163 * 300.00305 * 20 19 18 39 39 H 0.96703 * 117.00432 * 179.72485 * 23 21 20 40 40 H 1.08997 * 109.58699 * 66.42687 * 24 14 13 41 41 H 1.09004 * 109.58976 * 186.85870 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1075 -1.3948 5 1 1.5034 2.6198 0.8030 6 1 3.5955 1.4120 0.5917 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0790 9 6 1.2551 -2.4967 0.1120 10 1 0.6223 -2.4781 0.9993 11 6 2.2527 -3.6523 0.2203 12 6 1.4927 -4.9726 0.3667 13 6 0.6242 -5.1973 -0.8699 14 7 -0.2369 -4.0238 -1.0695 15 6 -1.5723 -4.1639 -1.1866 16 8 -2.2654 -3.1970 -1.4376 17 7 -2.1393 -5.3760 -1.0256 18 6 -3.5981 -5.5102 -1.0418 19 6 -3.9774 -6.9784 -0.8386 20 6 -5.5010 -7.1185 -0.8548 21 6 -5.8746 -8.5647 -0.6553 22 8 -5.0109 -9.3987 -0.5196 23 8 -7.1668 -8.9273 -0.6345 24 6 0.3846 -2.6940 -1.1330 25 1 -0.4849 0.8400 0.0004 26 1 2.8687 -3.6856 -0.6783 27 1 2.8896 -3.5016 1.0919 28 1 2.2038 -5.7924 0.4672 29 1 0.8580 -4.9308 1.2518 30 1 0.0064 -6.0835 -0.7246 31 1 1.2635 -5.3340 -1.7421 32 1 -1.5816 -6.1595 -0.8991 33 1 -3.9842 -5.1641 -2.0005 34 1 -4.0270 -4.9101 -0.2393 35 1 -3.5913 -7.3241 0.1203 36 1 -3.5484 -7.5788 -1.6408 37 1 -5.8874 -6.7727 -1.8137 38 1 -5.9297 -6.5181 -0.0525 39 1 -7.3572 -9.8669 -0.5078 40 1 1.0039 -2.6224 -2.0270 41 1 -0.3914 -1.9289 -1.1612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121815460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = -159.322264 kcal Electronic energy + Delta-G solvation = -22497.545290 eV Core-core repulsion = 18989.824776 eV Total energy + Delta-G solvation = -3507.720514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33881 -41.12062 -38.58614 -37.25277 -36.55181 -35.30249 -33.88864 -33.08207 -31.50929 -28.55732 -26.95642 -25.85118 -23.71981 -23.34957 -21.94225 -21.52274 -20.22351 -19.19262 -18.88990 -18.20398 -17.67031 -17.35480 -16.92470 -16.59278 -16.44649 -15.52072 -15.31536 -15.19268 -15.16545 -14.46655 -14.29001 -14.03139 -14.00300 -13.56427 -13.33021 -13.22039 -12.89786 -12.67288 -12.50185 -12.46956 -12.31455 -12.19374 -11.91180 -11.81343 -11.61322 -11.61096 -11.19995 -10.91723 -10.82390 -10.52518 -10.12672 -9.23637 -8.09410 -6.25551 1.25300 1.41828 1.42390 1.53920 1.74301 2.23138 2.29588 2.43715 3.07656 3.21359 3.84930 3.94935 3.99681 4.09390 4.18984 4.30302 4.52475 4.53778 4.61813 4.69064 4.75427 4.77012 4.83132 4.87244 5.09753 5.12727 5.16279 5.27422 5.30261 5.35136 5.57635 5.59834 5.65791 5.67647 5.90643 5.98736 6.18683 6.37975 6.88177 7.03100 7.15432 7.44265 7.70359 8.94839 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030203 B = 0.003134 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.834776 B = 8931.675872 C = 9609.556433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.009 3.991 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.038 3.962 10 H -0.012 1.012 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.110 3.890 14 N -0.628 5.628 15 C 0.693 3.307 16 O -0.640 6.640 17 N -0.737 5.737 18 C 0.138 3.862 19 C -0.107 4.107 20 C -0.110 4.110 21 C 0.487 3.513 22 O -0.554 6.554 23 O -0.515 6.515 24 C 0.146 3.854 25 H 0.259 0.741 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.104 0.896 29 H 0.049 0.951 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.408 0.592 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.427 0.573 40 H 0.034 0.966 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 -19.509 -1.596 21.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.006 0.994 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.364 5.364 15 C 0.394 3.606 16 O -0.522 6.522 17 N -0.397 5.397 18 C 0.014 3.986 19 C -0.145 4.145 20 C -0.148 4.148 21 C 0.331 3.669 22 O -0.445 6.445 23 O -0.329 6.329 24 C 0.023 3.977 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.246 0.754 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.289 0.711 40 H 0.052 0.948 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.955 -18.527 -1.783 20.655 hybrid contribution 0.352 0.402 0.229 0.581 sum -8.603 -18.125 -1.554 20.123 Atomic orbital electron populations 1.70125 1.07461 1.27231 1.50511 1.25917 0.95557 1.02981 0.94640 0.85548 0.78895 0.79208 0.78040 1.20243 1.21259 1.18615 1.21516 0.93540 0.91566 1.50783 0.91966 1.18928 0.93089 0.93644 0.92444 0.99391 1.21514 0.97669 0.94283 1.00840 1.21837 0.99056 0.98224 0.97295 1.21772 0.93566 0.86973 0.98924 1.47691 1.04308 1.09470 1.74955 1.16203 0.82391 0.83772 0.78229 1.90873 1.62857 1.40442 1.58033 1.45095 1.08181 1.07332 1.79061 1.21172 0.78692 0.96786 1.01936 1.21452 0.94680 0.93982 1.04336 1.21274 0.96466 0.89023 1.07993 1.23677 0.79857 0.92643 0.70727 1.90734 1.51471 1.54742 1.47583 1.84509 1.27786 1.36530 1.84068 1.21575 0.96551 0.81620 0.97989 0.93177 0.92436 0.92999 0.87774 0.93178 0.88184 0.90290 0.75355 0.91861 0.92583 0.90404 0.90018 0.85245 0.85541 0.71136 0.94760 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.37 11.61 21.45 0.25 -56.12 16 2 C 0.01 0.49 5.36 84.65 0.45 0.94 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -29.76 8.49 25.60 0.22 -29.54 16 8 H 0.06 3.32 7.75 -2.91 -0.02 3.29 16 9 C 0.04 1.95 2.19 -11.46 -0.03 1.93 16 10 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 11 C -0.11 -4.07 5.11 30.63 0.16 -3.91 16 12 C -0.13 -3.68 6.07 30.53 0.19 -3.49 16 13 C 0.11 3.09 6.40 86.22 0.55 3.64 16 14 N -0.63 -25.50 2.98 -837.74 -2.49 -28.00 16 15 C 0.69 28.74 8.30 179.05 1.49 30.22 16 16 O -0.64 -33.59 15.79 -3.99 -0.06 -33.65 16 17 N -0.74 -20.93 5.47 -478.54 -2.62 -23.54 16 18 C 0.14 3.19 5.68 86.38 0.49 3.68 16 19 C -0.11 -1.65 4.62 30.59 0.14 -1.51 16 20 C -0.11 -1.26 5.81 29.85 0.17 -1.08 16 21 C 0.49 7.08 8.33 71.23 0.59 7.67 16 22 O -0.55 -11.98 16.74 21.96 0.37 -11.62 16 23 O -0.52 -5.23 13.42 -51.41 -0.69 -5.92 16 24 C 0.15 7.40 5.46 86.36 0.47 7.87 16 25 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 2.03 5.57 -2.39 -0.01 2.02 16 31 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.41 8.79 5.93 -92.71 -0.55 8.24 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 36 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.43 1.03 9.10 -74.06 -0.67 0.36 16 40 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 4.24 5.38 -2.38 -0.01 4.23 16 Total: -1.00 -81.62 336.48 1.50 -80.13 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -0.17 Total: 15.61 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 4.90 Total: 16.43 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -4.86 Total: -107.66 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -0.39 Total: -51.19 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -81.62 1.50 -80.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121815460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.197 kcal (2) G-P(sol) polarization free energy of solvation -81.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds