Wall clock time and date at job start Tue Mar 31 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.39465 * 2 1 4 4 C 1.54570 * 110.44406 * 237.44450 * 2 1 3 5 5 C 1.54491 * 102.15081 * 214.41433 * 4 2 1 6 6 C 1.52994 * 110.46631 * 134.22617 * 5 4 2 7 7 N 1.46499 * 110.36499 * 256.50892 * 5 4 2 8 8 C 1.34784 * 119.99893 * 176.85321 * 7 5 4 9 9 O 1.21588 * 119.99858 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99964 * 179.97438 * 8 7 5 11 11 C 1.46496 * 119.99610 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46847 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 C 1.51331 * 104.82358 * 15.34056 * 5 4 2 22 22 O 1.20824 * 125.09588 * 182.31460 * 21 5 4 23 23 O 1.34064 * 109.80903 * 2.31854 * 21 5 4 24 24 H 1.09001 * 109.47237 * 299.03617 * 1 2 3 25 25 H 1.09005 * 109.46706 * 59.03291 * 1 2 3 26 26 H 1.08999 * 109.47139 * 179.03023 * 1 2 3 27 27 H 1.09004 * 109.47113 * 180.96735 * 3 2 1 28 28 H 1.09000 * 109.47167 * 300.96500 * 3 2 1 29 29 H 1.08997 * 109.47259 * 60.96760 * 3 2 1 30 30 H 1.08997 * 110.86989 * 96.24476 * 4 2 1 31 31 H 1.09005 * 110.86620 * 332.57381 * 4 2 1 32 32 H 1.08996 * 109.47576 * 181.60367 * 6 5 4 33 33 H 1.09008 * 109.47048 * 301.60317 * 6 5 4 34 34 H 1.09005 * 109.47309 * 61.60020 * 6 5 4 35 35 H 0.97000 * 120.00768 * 356.85077 * 7 5 4 36 36 H 0.96996 * 119.99887 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47627 * 59.99917 * 11 10 8 38 38 H 1.09002 * 109.46983 * 299.99313 * 11 10 8 39 39 H 1.09001 * 109.47671 * 59.99931 * 12 11 10 40 40 H 1.09006 * 109.47297 * 299.99651 * 12 11 10 41 41 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0698 -0.7794 -1.2208 5 6 3.3509 -1.4286 -0.6514 6 6 3.4293 -2.9019 -1.0562 7 7 4.5382 -0.7086 -1.1185 8 6 5.7614 -1.0740 -0.6861 9 8 5.8794 -2.0009 0.0919 10 7 6.8537 -0.4119 -1.1162 11 6 8.1832 -0.8095 -0.6467 12 6 9.2403 0.0959 -1.2821 13 6 10.6080 -0.3126 -0.7987 14 1 10.7127 -1.1355 -0.1070 15 6 11.7255 0.3640 -1.2394 16 7 11.5979 1.3663 -2.0813 17 14 13.4206 -0.1420 -0.6395 18 1 13.7551 0.6137 0.5944 19 1 13.4277 -1.5976 -0.3458 20 1 14.4268 0.1559 -1.6903 21 6 3.2148 -1.3015 0.8504 22 8 4.0416 -1.6592 1.6556 23 8 2.0393 -0.7327 1.1535 24 1 -0.3634 0.4988 0.8985 25 1 -0.3633 0.5288 -0.8812 26 1 -0.3633 -1.0275 -0.0174 27 1 3.1529 1.4166 -0.0174 28 1 1.6941 1.9589 -0.8812 29 1 1.7223 1.9484 0.8985 30 1 2.3093 -0.1010 -2.0396 31 1 1.3583 -1.5405 -1.5411 32 1 4.3231 -3.3508 -0.6231 33 1 2.5460 -3.4265 -0.6914 34 1 3.4743 -2.9784 -2.1427 35 1 4.4441 0.0311 -1.7389 36 1 6.7596 0.3272 -1.7372 37 1 8.3742 -1.8446 -0.9299 38 1 8.2285 -0.7154 0.4383 39 1 9.0496 1.1311 -0.9993 40 1 9.1949 0.0014 -2.3671 41 1 10.7176 1.6292 -2.3924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123638725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:17 Heat of formation + Delta-G solvation = -121.121828 kcal Electronic energy + Delta-G solvation = -23192.946538 eV Core-core repulsion = 19686.882519 eV Total energy + Delta-G solvation = -3506.064019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.78630 -39.41672 -37.73233 -35.87666 -34.72161 -33.67094 -33.10398 -31.37799 -28.93165 -28.00378 -27.37116 -24.48212 -23.98873 -21.91700 -21.68041 -20.93733 -19.51665 -18.23874 -17.28286 -16.77966 -16.55778 -16.18499 -15.45330 -15.11950 -14.80913 -14.40284 -14.12229 -13.81423 -13.69856 -13.68032 -13.34592 -13.05235 -12.82262 -12.60766 -12.40178 -12.29035 -12.18395 -12.14565 -11.89594 -11.60551 -11.35092 -10.95219 -10.76465 -10.45843 -10.34300 -10.15203 -9.95040 -9.67935 -9.03067 -8.68069 -8.46628 -8.31570 -6.42841 -4.12218 1.92498 2.92774 2.96282 3.40958 3.44485 3.47668 3.63806 3.73373 3.79988 4.06639 4.24054 4.41995 4.47635 4.59581 4.77595 5.01953 5.06462 5.19205 5.25836 5.26924 5.30918 5.35590 5.39394 5.54586 5.60554 5.70375 6.10403 6.16632 6.29817 6.33135 6.65384 6.67806 6.89624 7.02256 7.34215 7.37896 7.55515 8.09732 8.30333 8.40785 8.81614 8.93979 9.59472 10.98417 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034287 B = 0.003237 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.444075 B = 8648.863729 C = 8874.755858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.104 3.896 3 C -0.168 4.168 4 C -0.150 4.150 5 C 0.143 3.857 6 C -0.155 4.155 7 N -0.739 5.739 8 C 0.691 3.309 9 O -0.561 6.561 10 N -0.739 5.739 11 C 0.149 3.851 12 C 0.001 3.999 13 C -0.600 4.600 14 H 0.054 0.946 15 C 0.017 3.983 16 N -0.912 5.912 17 Si 1.074 2.926 18 H -0.287 1.287 19 H -0.287 1.287 20 H -0.284 1.284 21 C 0.466 3.534 22 O -0.402 6.402 23 O -0.344 6.344 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.397 0.603 36 H 0.390 0.610 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.012 0.988 40 H 0.013 0.987 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.767 -0.660 -2.376 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.067 3.933 3 C -0.225 4.225 4 C -0.187 4.187 5 C 0.053 3.947 6 C -0.214 4.214 7 N -0.400 5.400 8 C 0.391 3.609 9 O -0.436 6.436 10 N -0.393 5.393 11 C 0.026 3.974 12 C -0.037 4.037 13 C -0.639 4.639 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.548 5.548 17 Si 0.902 3.098 18 H -0.214 1.214 19 H -0.213 1.213 20 H -0.210 1.210 21 C 0.300 3.700 22 O -0.278 6.278 23 O -0.262 6.262 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.232 0.768 36 H 0.223 0.777 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.684 -1.387 -1.125 23.751 hybrid contribution -1.721 0.458 -0.608 1.882 sum -25.405 -0.929 -1.733 25.481 Atomic orbital electron populations 1.21872 0.90819 1.03666 1.03590 1.23034 0.95908 0.91855 0.82547 1.22280 1.02302 0.94058 1.03891 1.23403 0.96003 1.01085 0.98254 1.21272 0.85680 0.95542 0.92186 1.22123 1.04705 0.92120 1.02404 1.45120 1.04016 1.38489 1.52382 1.16130 0.80194 0.83242 0.81362 1.90990 1.84955 1.30487 1.37132 1.45522 1.06362 1.36940 1.50498 1.21430 0.78043 0.99263 0.98674 1.19453 0.93863 0.94579 0.95798 1.21923 0.91443 1.19733 1.30813 0.92777 1.25884 1.04033 0.94056 0.94722 1.70778 1.27146 1.26545 1.30328 0.83473 0.74644 0.75611 0.76106 1.21351 1.21302 1.20966 1.23306 0.79721 0.75720 0.91218 1.90839 1.37555 1.43058 1.56366 1.87120 1.35747 1.63014 1.40281 0.90970 0.89972 0.91151 0.91606 0.89973 0.90783 0.87836 0.87551 0.88870 0.91517 0.91046 0.76761 0.77709 0.92551 0.92546 0.96949 0.96908 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.91 37.15 0.33 -0.36 16 2 C 0.10 0.79 1.24 -89.80 -0.11 0.68 16 3 C -0.17 -1.15 8.78 37.16 0.33 -0.83 16 4 C -0.15 -0.96 5.54 -25.12 -0.14 -1.10 16 5 C 0.14 1.64 0.96 -131.88 -0.13 1.51 16 6 C -0.16 -1.79 8.39 37.15 0.31 -1.47 16 7 N -0.74 -9.12 5.15 -52.47 -0.27 -9.39 16 8 C 0.69 12.28 7.98 -86.91 -0.69 11.58 16 9 O -0.56 -12.38 12.16 -17.49 -0.21 -12.60 16 10 N -0.74 -13.21 5.56 -65.23 -0.36 -13.58 16 11 C 0.15 3.31 5.61 -4.04 -0.02 3.29 16 12 C 0.00 0.01 4.40 -27.88 -0.12 -0.11 16 13 C -0.60 -17.19 9.11 -34.44 -0.31 -17.50 16 14 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 15 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 16 N -0.91 -27.57 13.65 55.43 0.76 -26.81 16 17 Si 1.07 25.49 29.90 -169.99 -5.08 20.40 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.47 7.15 7.11 36.32 0.26 7.41 16 22 O -0.40 -8.26 15.50 -26.18 -0.41 -8.67 16 23 O -0.34 -4.35 10.48 -38.48 -0.40 -4.75 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.07 0.33 8.12 -51.93 -0.42 -0.10 16 27 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.42 7.41 -51.93 -0.38 0.04 16 31 H 0.11 0.48 7.59 -51.93 -0.39 0.09 16 32 H 0.09 1.46 6.28 -51.93 -0.33 1.14 16 33 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.40 3.47 8.21 -40.82 -0.33 3.13 16 36 H 0.39 5.81 8.49 -40.82 -0.35 5.47 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 40 H 0.01 0.32 8.01 -51.93 -0.42 -0.09 16 41 H 0.27 7.96 7.22 -40.82 -0.29 7.67 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -37.18 337.52 -7.63 -44.81 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.34 Total: 2.02 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.40 Total: 3.47 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.12 Total: -49.78 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -1.02 Total: -26.01 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -37.18 -7.63 -44.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123638725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.310 kcal (2) G-P(sol) polarization free energy of solvation -37.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds