Wall clock time and date at job start Tue Mar 31 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.39465 * 2 1 4 4 C 1.54570 * 110.44406 * 237.44450 * 2 1 3 5 5 C 1.54491 * 102.15081 * 214.41433 * 4 2 1 6 6 C 1.52994 * 110.46631 * 134.22617 * 5 4 2 7 7 N 1.46499 * 110.36499 * 256.50892 * 5 4 2 8 8 C 1.34784 * 119.99893 * 176.85321 * 7 5 4 9 9 O 1.21588 * 119.99858 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99964 * 179.97438 * 8 7 5 11 11 C 1.46496 * 119.99610 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46847 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47483 * 269.99808 * 17 15 13 19 19 H 1.48499 * 109.47134 * 30.00322 * 17 15 13 20 20 H 1.48507 * 109.46904 * 150.00145 * 17 15 13 21 21 C 1.51331 * 104.82358 * 15.34056 * 5 4 2 22 22 O 1.20824 * 125.09588 * 182.31460 * 21 5 4 23 23 O 1.34064 * 109.80903 * 2.31854 * 21 5 4 24 24 H 1.09001 * 109.47237 * 299.03617 * 1 2 3 25 25 H 1.09005 * 109.46706 * 59.03291 * 1 2 3 26 26 H 1.08999 * 109.47139 * 179.03023 * 1 2 3 27 27 H 1.09004 * 109.47113 * 180.96735 * 3 2 1 28 28 H 1.09000 * 109.47167 * 300.96500 * 3 2 1 29 29 H 1.08997 * 109.47259 * 60.96760 * 3 2 1 30 30 H 1.08997 * 110.86989 * 96.24476 * 4 2 1 31 31 H 1.09005 * 110.86620 * 332.57381 * 4 2 1 32 32 H 1.08996 * 109.47576 * 181.60367 * 6 5 4 33 33 H 1.09008 * 109.47048 * 301.60317 * 6 5 4 34 34 H 1.09005 * 109.47309 * 61.60020 * 6 5 4 35 35 H 0.97000 * 120.00768 * 356.85077 * 7 5 4 36 36 H 0.96996 * 119.99887 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47627 * 59.99917 * 11 10 8 38 38 H 1.09002 * 109.46983 * 299.99313 * 11 10 8 39 39 H 1.09001 * 109.47671 * 59.99931 * 12 11 10 40 40 H 1.09006 * 109.47297 * 299.99651 * 12 11 10 41 41 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0698 -0.7794 -1.2208 5 6 3.3509 -1.4286 -0.6514 6 6 3.4293 -2.9019 -1.0562 7 7 4.5382 -0.7086 -1.1185 8 6 5.7614 -1.0740 -0.6861 9 8 5.8794 -2.0009 0.0919 10 7 6.8537 -0.4119 -1.1162 11 6 8.1832 -0.8095 -0.6467 12 6 9.2403 0.0959 -1.2821 13 6 10.6080 -0.3126 -0.7987 14 1 10.7127 -1.1355 -0.1070 15 6 11.7255 0.3640 -1.2394 16 7 11.5979 1.3663 -2.0813 17 14 13.4206 -0.1420 -0.6395 18 1 13.7551 0.6137 0.5944 19 1 13.4277 -1.5976 -0.3458 20 1 14.4268 0.1559 -1.6903 21 6 3.2148 -1.3015 0.8504 22 8 4.0416 -1.6592 1.6556 23 8 2.0393 -0.7327 1.1535 24 1 -0.3634 0.4988 0.8985 25 1 -0.3633 0.5288 -0.8812 26 1 -0.3633 -1.0275 -0.0174 27 1 3.1529 1.4166 -0.0174 28 1 1.6941 1.9589 -0.8812 29 1 1.7223 1.9484 0.8985 30 1 2.3093 -0.1010 -2.0396 31 1 1.3583 -1.5405 -1.5411 32 1 4.3231 -3.3508 -0.6231 33 1 2.5460 -3.4265 -0.6914 34 1 3.4743 -2.9784 -2.1427 35 1 4.4441 0.0311 -1.7389 36 1 6.7596 0.3272 -1.7372 37 1 8.3742 -1.8446 -0.9299 38 1 8.2285 -0.7154 0.4383 39 1 9.0496 1.1311 -0.9993 40 1 9.1949 0.0014 -2.3671 41 1 10.7176 1.6292 -2.3924 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123638725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:17 Heat of formation + Delta-G solvation = -148.476299 kcal Electronic energy + Delta-G solvation = -23194.132717 eV Core-core repulsion = 19686.882519 eV Total energy + Delta-G solvation = -3507.250198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.75478 -40.77168 -38.90612 -37.23224 -36.31424 -35.06519 -34.41150 -32.63803 -30.69090 -28.47974 -28.05718 -26.37348 -25.08727 -23.61284 -22.59028 -22.44664 -20.59322 -19.63406 -18.66238 -18.29369 -17.85782 -17.17407 -16.77653 -16.45392 -15.90509 -15.68484 -15.49598 -15.38156 -15.07057 -14.67859 -14.40758 -14.19469 -13.80523 -13.68326 -13.56957 -13.37026 -13.10077 -13.05216 -12.86411 -12.72465 -12.56316 -12.30879 -12.12464 -12.07135 -11.89143 -11.57120 -11.50784 -11.11173 -10.78404 -10.58963 -10.32515 -9.90618 -8.73594 -6.44074 0.80011 1.52951 1.61301 1.68726 1.80534 2.02021 2.15592 2.54376 2.80384 3.06855 3.11953 3.24643 3.46705 3.69932 3.89048 4.03523 4.28047 4.33539 4.49394 4.55658 4.61689 4.65320 4.66312 4.74077 4.79203 4.89494 4.90852 5.07121 5.15321 5.16146 5.30380 5.30567 5.32601 5.44296 5.76216 5.90876 5.93462 6.12725 6.43624 6.52898 7.02759 7.34943 7.55629 8.69147 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034287 B = 0.003237 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.444075 B = 8648.863729 C = 8874.755858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.092 3.908 3 C -0.170 4.170 4 C -0.132 4.132 5 C 0.140 3.860 6 C -0.154 4.154 7 N -0.715 5.715 8 C 0.688 3.312 9 O -0.605 6.605 10 N -0.732 5.732 11 C 0.170 3.830 12 C 0.011 3.989 13 C -0.624 4.624 14 H 0.046 0.954 15 C -0.030 4.030 16 N -0.931 5.931 17 Si 1.119 2.881 18 H -0.273 1.273 19 H -0.273 1.273 20 H -0.278 1.278 21 C 0.460 3.540 22 O -0.473 6.473 23 O -0.361 6.361 24 H 0.064 0.936 25 H 0.116 0.884 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.419 0.581 36 H 0.407 0.593 37 H 0.043 0.957 38 H 0.034 0.966 39 H 0.005 0.995 40 H 0.010 0.990 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.934 0.081 -4.389 28.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.056 3.944 3 C -0.227 4.227 4 C -0.170 4.170 5 C 0.051 3.949 6 C -0.212 4.212 7 N -0.377 5.377 8 C 0.387 3.613 9 O -0.483 6.483 10 N -0.388 5.388 11 C 0.045 3.955 12 C -0.027 4.027 13 C -0.663 4.663 14 H 0.065 0.935 15 C -0.229 4.229 16 N -0.568 5.568 17 Si 0.940 3.060 18 H -0.199 1.199 19 H -0.198 1.198 20 H -0.203 1.203 21 C 0.298 3.702 22 O -0.355 6.355 23 O -0.279 6.279 24 H 0.084 0.916 25 H 0.135 0.865 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.139 0.861 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.258 0.742 36 H 0.243 0.757 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.028 0.972 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.955 -0.586 -3.198 26.158 hybrid contribution -1.208 0.268 0.030 1.237 sum -27.162 -0.319 -3.169 27.348 Atomic orbital electron populations 1.21946 0.88233 1.04487 1.04926 1.23588 0.97745 0.91697 0.81349 1.22363 1.00907 0.94009 1.05410 1.23563 0.93119 1.02003 0.98274 1.21528 0.87217 0.96233 0.89942 1.22108 1.03351 0.91933 1.03773 1.44864 1.02470 1.38699 1.51691 1.16319 0.81420 0.82616 0.80895 1.90986 1.85829 1.32457 1.38995 1.45144 1.05080 1.37644 1.50950 1.20854 0.79706 0.97888 0.97019 1.19275 0.93463 0.94455 0.95488 1.22333 0.93382 1.19696 1.30863 0.93523 1.27335 1.07942 0.93431 0.94144 1.70893 1.26754 1.27635 1.31545 0.82902 0.70569 0.76248 0.76287 1.19858 1.19844 1.20278 1.24036 0.79418 0.74160 0.92544 1.90794 1.40230 1.46010 1.58460 1.87098 1.34523 1.62878 1.43388 0.91643 0.86546 0.90705 0.93812 0.86144 0.91598 0.84213 0.84449 0.93684 0.89496 0.88344 0.74196 0.75741 0.93865 0.94775 0.97652 0.97153 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 8.91 71.98 0.64 -0.15 16 2 C 0.09 1.11 1.24 -10.26 -0.01 1.10 16 3 C -0.17 -1.85 8.78 71.98 0.63 -1.22 16 4 C -0.13 -1.10 5.54 31.64 0.18 -0.92 16 5 C 0.14 2.97 0.96 3.56 0.00 2.97 16 6 C -0.15 -3.33 8.39 71.98 0.60 -2.73 16 7 N -0.72 -16.62 5.15 -438.18 -2.26 -18.87 16 8 C 0.69 24.73 7.98 179.05 1.43 26.16 16 9 O -0.60 -28.01 12.16 17.78 0.22 -27.79 16 10 N -0.73 -26.34 5.56 -478.54 -2.66 -29.00 16 11 C 0.17 7.81 5.61 86.38 0.48 8.29 16 12 C 0.01 0.55 4.40 29.85 0.13 0.68 16 13 C -0.62 -36.29 9.11 25.60 0.23 -36.06 16 14 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 15 C -0.03 -1.74 5.46 84.65 0.46 -1.28 16 16 N -0.93 -56.47 13.65 21.45 0.29 -56.17 16 17 Si 1.12 50.89 29.90 68.60 2.05 52.94 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 C 0.46 14.40 7.11 71.44 0.51 14.90 16 22 O -0.47 -20.80 15.50 29.07 0.45 -20.35 16 23 O -0.36 -8.96 10.48 -50.16 -0.53 -9.49 16 24 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.12 -0.08 8.14 -2.38 -0.02 -0.10 16 26 H 0.07 0.40 8.12 -2.39 -0.02 0.38 16 27 H 0.04 0.68 8.08 -2.38 -0.02 0.66 16 28 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.14 0.23 7.41 -2.39 -0.02 0.21 16 31 H 0.14 0.42 7.59 -2.38 -0.02 0.40 16 32 H 0.04 1.45 6.28 -2.39 -0.02 1.44 16 33 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.42 6.02 8.21 -92.71 -0.76 5.26 16 36 H 0.41 11.77 8.49 -92.71 -0.79 10.98 16 37 H 0.04 2.08 8.14 -2.39 -0.02 2.07 16 38 H 0.03 1.70 8.14 -2.39 -0.02 1.69 16 39 H 0.01 0.27 8.01 -2.39 -0.02 0.26 16 40 H 0.01 0.53 8.01 -2.38 -0.02 0.51 16 41 H 0.26 15.62 7.22 -92.71 -0.67 14.95 16 Total: -1.00 -87.04 337.52 2.46 -84.58 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -0.40 Total: 12.41 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 5.29 Total: 11.75 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -4.62 Total: -104.05 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: 0.14 Total: -57.63 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.05 Total: 52.94 kcal Total: -87.04 2.46 -84.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123638725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.899 kcal (2) G-P(sol) polarization free energy of solvation -87.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds