Wall clock time and date at job start Tue Mar 31 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 110.39211 * 2 1 4 4 C 1.54565 * 110.44240 * 237.43801 * 2 1 3 5 5 C 1.54490 * 102.14891 * 268.10772 * 4 2 1 6 6 C 1.53001 * 110.36997 * 225.81634 * 5 4 2 7 7 N 1.46506 * 110.36430 * 103.49317 * 5 4 2 8 8 C 1.34780 * 119.99713 * 180.02562 * 7 5 4 9 9 O 1.21587 * 119.99955 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99830 * 180.02562 * 8 7 5 11 11 C 1.46505 * 120.00063 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47088 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.46797 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99945 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99755 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00086 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46649 * 60.00155 * 17 15 13 19 19 H 1.48501 * 109.47175 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47222 * 300.00108 * 17 15 13 21 21 C 1.51324 * 104.82493 * 344.65759 * 5 4 2 22 22 O 1.20824 * 125.09578 * 177.70409 * 21 5 4 23 23 O 1.34067 * 109.80999 * 357.68052 * 21 5 4 24 24 H 1.08996 * 109.47219 * 299.03439 * 1 2 3 25 25 H 1.09003 * 109.46904 * 59.03862 * 1 2 3 26 26 H 1.09001 * 109.46839 * 179.03728 * 1 2 3 27 27 H 1.09000 * 109.46889 * 180.96995 * 3 2 1 28 28 H 1.09005 * 109.46637 * 300.96494 * 3 2 1 29 29 H 1.08997 * 109.47425 * 60.96424 * 3 2 1 30 30 H 1.09005 * 110.86641 * 26.27611 * 4 2 1 31 31 H 1.09009 * 110.86782 * 149.73531 * 4 2 1 32 32 H 1.09001 * 109.46701 * 60.00010 * 6 5 4 33 33 H 1.09001 * 109.46788 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47023 * 300.00173 * 6 5 4 35 35 H 0.97000 * 119.99947 * 359.97438 * 7 5 4 36 36 H 0.97001 * 120.00293 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.46863 * 299.99778 * 11 10 8 38 38 H 1.08997 * 109.46743 * 59.99309 * 11 10 8 39 39 H 1.09002 * 109.46805 * 299.99386 * 12 11 10 40 40 H 1.08992 * 109.47320 * 59.99803 * 12 11 10 41 41 H 0.97000 * 120.00195 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0632 1.4341 0.0000 4 6 2.0699 -0.7795 -1.2207 5 6 2.2302 -2.2063 -0.6503 6 6 3.5835 -2.7932 -1.0564 7 7 1.1396 -3.0668 -1.1157 8 6 1.0894 -4.3579 -0.7320 9 8 1.9495 -4.8085 -0.0001 10 7 0.0865 -5.1497 -1.1605 11 6 0.0322 -6.5532 -0.7439 12 6 -1.1957 -7.2223 -1.3648 13 6 -1.2518 -8.6659 -0.9357 14 1 -0.4878 -9.0662 -0.2857 15 6 -2.2784 -9.4756 -1.3731 16 7 -3.2084 -8.9884 -2.1651 17 14 -2.3476 -11.2652 -0.8419 18 1 -2.4384 -11.3389 0.6384 19 1 -3.5395 -11.9147 -1.4444 20 1 -1.1198 -11.9648 -1.2980 21 6 2.1603 -2.0331 0.8514 22 8 2.2071 -2.9321 1.6572 23 8 2.0393 -0.7326 1.1536 24 1 -0.3633 0.4987 0.8985 25 1 -0.3633 0.5287 -0.8813 26 1 -0.3633 -1.0275 -0.0173 27 1 3.1529 1.4166 -0.0174 28 1 1.6941 1.9589 -0.8813 29 1 1.7223 1.9485 0.8985 30 1 1.3497 -0.7670 -2.0388 31 1 3.0299 -0.3773 -1.5446 32 1 4.3839 -2.1634 -0.6680 33 1 3.6809 -3.7988 -0.6472 34 1 3.6496 -2.8357 -2.1436 35 1 0.4533 -2.7072 -1.6992 36 1 -0.5994 -4.7903 -1.7447 37 1 0.9340 -7.0665 -1.0780 38 1 -0.0352 -6.6073 0.3426 39 1 -2.0972 -6.7090 -1.0303 40 1 -1.1286 -7.1681 -2.4513 41 1 -3.9309 -9.5579 -2.4726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123638726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:21 Heat of formation + Delta-G solvation = -117.528175 kcal Electronic energy + Delta-G solvation = -23139.088860 eV Core-core repulsion = 19633.180673 eV Total energy + Delta-G solvation = -3505.908187 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.75121 -39.35880 -37.71301 -35.79030 -34.56456 -33.63356 -32.87506 -31.35817 -29.13311 -27.98265 -27.32107 -24.79630 -24.04733 -21.83591 -21.53252 -20.72496 -19.46555 -18.11363 -17.21895 -16.73734 -16.28135 -16.14242 -15.36159 -15.02178 -14.71984 -14.49837 -14.28294 -13.99387 -13.67648 -13.54438 -13.20473 -12.98556 -12.79324 -12.53522 -12.35888 -12.26730 -12.21478 -12.14415 -11.86342 -11.31906 -11.16808 -10.99801 -10.73898 -10.62812 -10.40119 -10.24438 -9.73940 -9.49801 -9.23481 -8.98724 -8.47076 -8.24727 -6.07296 -4.09681 1.95363 2.98540 2.99092 3.33582 3.36808 3.41093 3.45956 3.78275 3.85030 4.10024 4.27210 4.40691 4.46312 4.64068 4.81490 5.05564 5.09455 5.22786 5.28658 5.29873 5.30089 5.34195 5.44966 5.58928 5.64176 5.73021 6.18846 6.30797 6.39120 6.43783 6.70101 6.81142 7.03302 7.13863 7.56729 7.58674 7.65528 7.92060 8.27235 8.41470 8.94893 9.02108 9.54956 11.04389 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.003213 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.091826 B = 8711.960098 C = 8948.252522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.103 3.897 3 C -0.142 4.142 4 C -0.150 4.150 5 C 0.144 3.856 6 C -0.157 4.157 7 N -0.739 5.739 8 C 0.692 3.308 9 O -0.564 6.564 10 N -0.737 5.737 11 C 0.141 3.859 12 C 0.014 3.986 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.467 3.533 22 O -0.405 6.405 23 O -0.344 6.344 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.397 0.603 36 H 0.392 0.608 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.021 0.979 40 H 0.022 0.978 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.798 23.902 -2.320 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.066 3.934 3 C -0.199 4.199 4 C -0.188 4.188 5 C 0.054 3.946 6 C -0.215 4.215 7 N -0.400 5.400 8 C 0.392 3.608 9 O -0.440 6.440 10 N -0.391 5.391 11 C 0.018 3.982 12 C -0.023 4.023 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.301 3.699 22 O -0.282 6.282 23 O -0.262 6.262 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.232 0.768 36 H 0.224 0.776 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.507 23.019 -1.094 24.929 hybrid contribution -0.911 -0.650 -0.468 1.213 sum 8.596 22.369 -1.562 24.015 Atomic orbital electron populations 1.22289 0.92676 1.03709 1.03890 1.23041 0.94724 0.93032 0.82564 1.21869 1.02200 0.92289 1.03573 1.23400 1.04530 0.92644 0.98217 1.21250 0.90701 0.90663 0.91986 1.22150 0.92528 1.04536 1.02304 1.45115 1.29288 1.09820 1.55777 1.16122 0.83294 0.80415 0.80966 1.90953 1.39903 1.73601 1.39540 1.45524 1.27336 1.12719 1.53501 1.21600 1.00875 0.76507 0.99188 1.19313 0.91295 0.95422 0.96313 1.21027 1.09968 0.94720 1.30221 0.92247 1.24988 0.95450 0.98880 0.94947 1.69944 1.13158 1.36342 1.34018 0.86567 0.77449 0.84500 0.79005 1.20083 1.21271 1.20100 1.23353 0.73780 0.81443 0.91300 1.90824 1.40925 1.40092 1.56387 1.87116 1.77491 1.21237 1.40332 0.90802 0.89959 0.91560 0.91165 0.89975 0.90987 0.87820 0.87580 0.91635 0.88448 0.91099 0.76753 0.77568 0.92727 0.92724 0.96037 0.96009 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 8.77 37.16 0.33 -0.82 16 2 C 0.10 0.79 1.24 -89.79 -0.11 0.68 16 3 C -0.14 -0.70 8.91 37.16 0.33 -0.36 16 4 C -0.15 -0.98 5.53 -25.13 -0.14 -1.12 16 5 C 0.14 1.66 0.96 -131.88 -0.13 1.53 16 6 C -0.16 -1.84 8.37 37.16 0.31 -1.53 16 7 N -0.74 -9.19 5.15 -52.47 -0.27 -9.46 16 8 C 0.69 12.29 7.98 -86.92 -0.69 11.60 16 9 O -0.56 -12.40 12.25 -16.39 -0.20 -12.60 16 10 N -0.74 -13.18 5.56 -65.22 -0.36 -13.54 16 11 C 0.14 3.11 5.61 -4.04 -0.02 3.08 16 12 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 13 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 14 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 17 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.47 7.15 7.14 36.31 0.26 7.41 16 22 O -0.41 -8.31 15.79 -25.84 -0.41 -8.71 16 23 O -0.34 -4.34 10.48 -38.48 -0.40 -4.74 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.44 7.42 -51.93 -0.39 0.05 16 31 H 0.11 0.50 7.60 -51.92 -0.39 0.10 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.55 6.02 -51.93 -0.31 1.24 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.40 3.52 8.21 -40.82 -0.34 3.19 16 36 H 0.39 5.89 8.49 -40.82 -0.35 5.55 16 37 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -36.19 338.96 -7.62 -43.82 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.38 Total: 1.81 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -0.42 Total: 7.27 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.10 Total: -48.60 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.01 Total: -26.05 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.19 -7.62 -43.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123638726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.712 kcal (2) G-P(sol) polarization free energy of solvation -36.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds